mRNA_P-wetherbeei_contig104.12.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig104.12.1
Unique NamemRNA_P-wetherbeei_contig104.12.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: A0A3C0TV48_9PROT (DUF1476 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TV48_9PROT)

HSP 1 Score: 160 bits (404), Expect = 5.970e-49
Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQVQNEG 321
            MS FDEREKGFERKF  DSE+EFKAMARRNKLLGLWAA+KMGL G  A++YAKEVVK+DFQEAGDDDVLRKVK D++AKG+S SEHQIRREMDELL +AR Q+++ G
Sbjct:    1 MSTFDEREKGFERKFALDSEMEFKAMARRNKLLGLWAAQKMGLKGDAAESYAKEVVKADFQEAGDDDVLRKVKGDMEAKGLSFSEHQIRREMDELLAEARAQIKSGG 107          
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: A0A7Y2BR40_9HYPH (DUF1476 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2BR40_9HYPH)

HSP 1 Score: 154 bits (390), Expect = 8.120e-47
Identity = 78/107 (72.90%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQVQNEG 321
            M+ FD+RE+GFERKF HD ELEFKA ARRNKLLGLWAAE M + G +A AYAKEVVKSDF+EAGDDDV RKV+ D DAKGV QS+HQ+RR+MDEL+  A+QQ+QNE 
Sbjct:    1 MNTFDKREEGFERKFAHDEELEFKANARRNKLLGLWAAELMDISGDEATAYAKEVVKSDFEEAGDDDVFRKVRGDFDAKGVDQSDHQLRRKMDELMATAKQQIQNEA 107          
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: A0A353LSD1_9PROT (DUF1476 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LSD1_9PROT)

HSP 1 Score: 153 bits (386), Expect = 3.300e-46
Identity = 79/107 (73.83%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQVQNEG 321
            MS FD+REK FE KF HD ELEFKA ARRNKLLGLWAAEK+GL G  A AYAKEV+KSDF+EAGDDDV RK+K D +AKGV  S+HQIRREMD LL  AR+Q+Q EG
Sbjct:    1 MSTFDDREKSFENKFAHDQELEFKANARRNKLLGLWAAEKLGLSGDAAQAYAKEVIKSDFEEAGDDDVFRKLKGDFEAKGVDLSDHQIRREMDSLLAVARKQIQTEG 107          
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: A0A845QDD8_9HYPH (DUF1476 family protein n=1 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845QDD8_9HYPH)

HSP 1 Score: 151 bits (381), Expect = 1.910e-45
Identity = 79/107 (73.83%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQVQNEG 321
            MS  D+R K FE KF HD ELEFKA+ARRNKLLGLWAAE+MGL G DA AYAKEVVK+DF+EAG++DV RKV  D  AKGV +SEHQIRR M ELLVKAR+QV NEG
Sbjct:    1 MSSLDKRGKDFENKFAHDQELEFKAVARRNKLLGLWAAEEMGLSGEDAQAYAKEVVKADFEEAGEEDVFRKVSGDFSAKGVDKSEHQIRRTMQELLVKAREQVANEG 107          
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: X5MDH2_9HYPH (Uncharacterized protein n=1 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5MDH2_9HYPH)

HSP 1 Score: 149 bits (377), Expect = 7.770e-45
Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQVQNEG 321
            MS  D+R K FE KF HD ELEFKA+ARRNKLLGLWAAE MGL G DADAYAKEVVK+DF+EAG++DV RKV  DL+A+ V +SEHQIRR M EL+VKAR+QV NEG
Sbjct:    1 MSSLDKRGKDFENKFAHDQELEFKAVARRNKLLGLWAAEAMGLTGNDADAYAKEVVKADFEEAGEEDVYRKVAGDLEARSVDKSEHQIRRTMQELMVKAREQVANEG 107          
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: A0A4D7QLI1_9HYPH (DUF1476 domain-containing protein n=1 Tax=Phreatobacter sp. NMCR1094 TaxID=2570229 RepID=A0A4D7QLI1_9HYPH)

HSP 1 Score: 149 bits (376), Expect = 1.070e-44
Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQVQ 312
            MS FD+RE+GFE+KF HD EL FKA ARRNKLLGLW AEK+G  G DADAYAKEVV SDF+EAGDDDV RKVKADLDA    QSEHQIRR MDEL+ +A QQ+Q
Sbjct:    1 MSTFDKREEGFEKKFAHDEELRFKATARRNKLLGLWVAEKLGKTGADADAYAKEVVMSDFEEAGDDDVFRKVKADLDAGNAGQSEHQIRRTMDELMAQAIQQIQ 104          
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: A3UDW0_9PROT (Uncharacterized protein n=3 Tax=Oceanicaulis TaxID=153232 RepID=A3UDW0_9PROT)

HSP 1 Score: 148 bits (373), Expect = 3.070e-44
Identity = 73/105 (69.52%), Postives = 90/105 (85.71%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQVQN 315
            MSGFD+RE  FE KF HD ELEFKA+ARRNKLLGLWAAE MGL G DA+AY K+VVK+DF+EAGD+DV RKV+ D DA+G+ QS+HQIR +M++LL +AR+QV+N
Sbjct:    1 MSGFDDRENAFENKFAHDQELEFKAVARRNKLLGLWAAELMGLTGDDAEAYGKDVVKADFEEAGDEDVFRKVRGDFDARGIEQSDHQIRHKMEQLLEEAREQVRN 105          
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: A0A5D4GRT5_9HYPH (DUF1476 domain-containing protein n=1 Tax=Mesorhizobium microcysteis TaxID=2682781 RepID=A0A5D4GRT5_9HYPH)

HSP 1 Score: 146 bits (369), Expect = 1.250e-43
Identity = 73/105 (69.52%), Postives = 89/105 (84.76%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQVQN 315
            M+  D+REK FE KF HD EL+F+AMARRNKLLGLWAAEK+G  G +ADAYAKEVVK+DF+EAGD+DV RKV+ D DA GV+QS+HQIRR MDELL +A +Q++N
Sbjct:    1 MASMDDREKAFENKFAHDEELKFRAMARRNKLLGLWAAEKLGKSGEEADAYAKEVVKADFEEAGDEDVFRKVRGDFDAAGVTQSDHQIRRTMDELLAEAVEQIRN 105          
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: Q0AQW1_MARMM (Uncharacterized protein n=1 Tax=Maricaulis maris (strain MCS10) TaxID=394221 RepID=Q0AQW1_MARMM)

HSP 1 Score: 146 bits (368), Expect = 1.830e-43
Identity = 72/107 (67.29%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQVQNEG 321
            MSG ++REKGFE KF HD E+EFKA ARR KLLGLWAAEKMG+ G +A+AYAK VV +DF+EAGDDDV RKV+ D DAKGV  S+H +R++MD+LL+KAR+Q+++EG
Sbjct:    1 MSGINDREKGFENKFAHDQEIEFKANARRCKLLGLWAAEKMGMDGQEAEAYAKTVVVADFEEAGDDDVFRKVRGDFDAKGVELSDHLLRKQMDDLLIKAREQIRSEG 107          
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Match: A0A3F2U6D6_9HYPH (DUF1476 domain-containing protein n=1 Tax=Mesorhizobium sp. YM1C-6-2 TaxID=1827501 RepID=A0A3F2U6D6_9HYPH)

HSP 1 Score: 145 bits (367), Expect = 2.440e-43
Identity = 77/103 (74.76%), Postives = 86/103 (83.50%), Query Frame = 1
Query:    1 MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADAYAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKARQQV 309
            MS F +REKGFERKFV D EL FKA  RRNKLLGLWAAEK+G  G DA+AYAKEVV +DF+EAGD DVLRKVKAD DA GV+QSEHQIRR MDEL+ +A +QV
Sbjct:    1 MSDFSDREKGFERKFVMDEELRFKATVRRNKLLGLWAAEKLGKSGDDAEAYAKEVVSADFEEAGDHDVLRKVKADFDAAGVTQSEHQIRRTMDELMAQAIEQV 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig104.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TV48_9PROT5.970e-4978.50DUF1476 domain-containing protein n=1 Tax=Alphapro... [more]
A0A7Y2BR40_9HYPH8.120e-4772.90DUF1476 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A353LSD1_9PROT3.300e-4673.83DUF1476 domain-containing protein n=1 Tax=Alphapro... [more]
A0A845QDD8_9HYPH1.910e-4573.83DUF1476 family protein n=1 Tax=Pyruvatibacter mobi... [more]
X5MDH2_9HYPH7.770e-4572.90Uncharacterized protein n=1 Tax=Candidatus Phaeoma... [more]
A0A4D7QLI1_9HYPH1.070e-4475.00DUF1476 domain-containing protein n=1 Tax=Phreatob... [more]
A3UDW0_9PROT3.070e-4469.52Uncharacterized protein n=3 Tax=Oceanicaulis TaxID... [more]
A0A5D4GRT5_9HYPH1.250e-4369.52DUF1476 domain-containing protein n=1 Tax=Mesorhiz... [more]
Q0AQW1_MARMM1.830e-4367.29Uncharacterized protein n=1 Tax=Maricaulis maris (... [more]
A0A3F2U6D6_9HYPH2.440e-4374.76DUF1476 domain-containing protein n=1 Tax=Mesorhiz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig104contigP-wetherbeei_contig104:9405..9728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog314254.OA2633_04666
Preferred nameMA20_09035
PFAMsDUF1476
Model size324
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.03e-45
EggNOG OGsCOG5467@1|root,COG5467@2|Bacteria,1MZRN@1224|Proteobacteria,2UC1G@28211|Alphaproteobacteria,43Y73@69657|Hyphomonadaceae
DescriptionDomain of unknown function (DUF1476)
Cds size324
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.6126068-CDS-P-wetherbeei_contig104:9404..97281683185867.6126068-CDS-P-wetherbeei_contig104:9404..9728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig104 9405..9728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig104.12.1prot_P-wetherbeei_contig104.12.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig104 9405..9728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig104.12.1

>prot_P-wetherbeei_contig104.12.1 ID=prot_P-wetherbeei_contig104.12.1|Name=mRNA_P-wetherbeei_contig104.12.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MSGFDEREKGFERKFVHDSELEFKAMARRNKLLGLWAAEKMGLGGTDADA
YAKEVVKSDFQEAGDDDVLRKVKADLDAKGVSQSEHQIRREMDELLVKAR
QQVQNEG*
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mRNA from alignment at P-wetherbeei_contig104:9405..9728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig104.12.1 ID=mRNA_P-wetherbeei_contig104.12.1|Name=mRNA_P-wetherbeei_contig104.12.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig104:9405..9728+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGGTTTTGACGAACGCGAAAAGGGCTTTGAGCGCAAATTTGTGCA TGATTCTGAGCTGGAATTTAAAGCCATGGCGCGGCGCAACAAATTGCTGG GCCTTTGGGCAGCCGAAAAAATGGGGCTGGGCGGGACCGACGCCGATGCC TATGCCAAAGAGGTCGTCAAATCCGACTTTCAGGAAGCTGGCGATGACGA TGTTCTGCGCAAAGTGAAGGCCGATCTGGACGCCAAAGGGGTCAGCCAGT CTGAACACCAAATCCGCCGCGAAATGGATGAATTGCTGGTCAAGGCGCGG CAGCAGGTGCAAAACGAGGGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig104:9405..9728+

>mRNA_P-wetherbeei_contig104.12.1 ID=mRNA_P-wetherbeei_contig104.12.1|Name=mRNA_P-wetherbeei_contig104.12.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig104:9405..9728+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGGTTTTGACGAACGCGAAAAGGGCTTTGAGCGCAAATTTGTGCA
TGATTCTGAGCTGGAATTTAAAGCCATGGCGCGGCGCAACAAATTGCTGG
GCCTTTGGGCAGCCGAAAAAATGGGGCTGGGCGGGACCGACGCCGATGCC
TATGCCAAAGAGGTCGTCAAATCCGACTTTCAGGAAGCTGGCGATGACGA
TGTTCTGCGCAAAGTGAAGGCCGATCTGGACGCCAAAGGGGTCAGCCAGT
CTGAACACCAAATCCGCCGCGAAATGGATGAATTGCTGGTCAAGGCGCGG
CAGCAGGTGCAAAACGAGGGATAA
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