mRNA_P-wetherbeei_contig14977.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14977.1.1
Unique NamemRNA_P-wetherbeei_contig14977.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: D7FRQ4_ECTSI (Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ4_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 4.410e-65
Identity = 104/142 (73.24%), Postives = 118/142 (83.10%), Query Frame = 1
Query:    1 DITYLDDTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLRGAAGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            DI YLDDTDLAGPLVFCL FG CLL TGK HFGYIYGFG+FGC+AT +VLNL+  G+KPID+WKT SVLGYCLLPVIGLAA+ +V DLRG  G  L   AV WC+ +ATRLFE+YL MR QR+LVAYPV LLY CFVLIT++
Sbjct:  206 DINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLI--GEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 345          
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: A0A6H5JG11_9PHAE (Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG11_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 4.660e-65
Identity = 104/142 (73.24%), Postives = 118/142 (83.10%), Query Frame = 1
Query:    1 DITYLDDTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLRGAAGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            DI YLDDTDLAGPLVFCL FG CLL TGK HFGYIYGFG+FGC+AT +VLNL+  G+KPID+WKT SVLGYCLLPVIGLAA+ +V DLRG  G  L   AV WC+ +ATRLFE+YL MR QR+LVAYPV LLY CFVLIT++
Sbjct:  208 DINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLI--GEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 347          
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: A0A835Z6H4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H4_9STRA)

HSP 1 Score: 193 bits (490), Expect = 8.180e-60
Identity = 95/139 (68.35%), Postives = 112/139 (80.58%), Query Frame = 1
Query:   10 YLDDTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLRGAAGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            YLD+TDLAGPLVF L+FG CLL  GK+HFGYIYGFG FGC A +LVLNL+  GD+PID W+T SVLGYCLLPV+ L+A+ + +DL G  GLALA +AV W   AAT+LFEQYL MR QRWL+AYP+ LLY CFVL+ IF
Sbjct:   89 YLDETDLAGPLVFALVFGTCLLLAGKLHFGYIYGFGAFGCGALSLVLNLM--GDRPIDAWRTTSVLGYCLLPVVLLSAVGIALDLSGRVGLALAGAAVAWSCTAATKLFEQYLDMRHQRWLIAYPIGLLYCCFVLMAIF 225          
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: A0A7S2TR42_9EUKA (Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TR42_9EUKA)

HSP 1 Score: 171 bits (433), Expect = 1.030e-51
Identity = 82/136 (60.29%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   19 DTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLRGAAGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            D D+AGPLVFCL+ G CL+   K+HFGYIYGFGL GC+    +LNL+S  DK ID+++T S+LGYCLLP++GLAAL+ V+ L+G  G  L A  VLWC+ AATR  E  L MR QR+LVAYP+ LLY+CF LIT+F
Sbjct:   49 DADMAGPLVFCLLLGFCLMLRLKMHFGYIYGFGLIGCLGMYTILNLMSDPDKSIDIFRTISILGYCLLPIVGLAALSTVLSLKGYLGFGLTAFTVLWCTIAATRFVEATLGMRDQRYLVAYPLMLLYSCFALITVF 184          
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: A0A7S0DM30_9EUKA (Protein YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM30_9EUKA)

HSP 1 Score: 169 bits (428), Expect = 5.050e-51
Identity = 80/136 (58.82%), Postives = 104/136 (76.47%), Query Frame = 1
Query:   19 DTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLRGAAGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            D D+AGPL FCL+ G CLL TGKVHFGYIYGFGL GC+   ++LNL+S  D+ ID+++T S+LGYCLLP++ LAA ++V +L+G  G +     +LWC+ AATR  E  L MRPQR+LVAYP+ LLY+CF LIT+F
Sbjct:   46 DADMAGPLFFCLLLGFCLLLTGKVHFGYIYGFGLIGCLGMYIILNLMS--DRSIDIYRTASILGYCLLPIVSLAAASIVFNLKGYIGFSTTTVTILWCTVAATRFVEATLDMRPQRYLVAYPLMLLYSCFALITVF 179          
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: A0A8K1CDX0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDX0_PYTOL)

HSP 1 Score: 170 bits (431), Expect = 6.570e-51
Identity = 84/140 (60.00%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   13 LDDTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLR--GAAGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            LDD DLAGPLV+C +FG CLL   KVHFGYIYGFG+  CV   L++NLLSP D+ ID+++ CSVLGYCLLP+IGLAA+N+ + ++  G AG ALA  A+LW +  A+R FE+ L M  Q++L+AYPV L+Y CFVLIT+F
Sbjct:   84 LDDADLAGPLVYCFVFGMCLLLAAKVHFGYIYGFGVLSCVFMYLLMNLLSP-DRAIDIYRVCSVLGYCLLPIIGLAAINIFVSVQKLGLAGFALATVAILWSTHTASRFFEKALYMSEQKYLIAYPVGLVYACFVLITVF 222          
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: A0A5D6XGY6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGY6_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.740e-50
Identity = 83/140 (59.29%), Postives = 109/140 (77.86%), Query Frame = 1
Query:   13 LDDTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLR--GAAGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            LDD DLAGPLVFC +FG CLL   KVHFGYIYGFG+  C+   L++NLLSP ++ ID+++ CSVLGYCLLP++ LAA+N+V+ +   G AG ALA+ A+LW S  A+R FE+ L M  Q++LVAYP+ L+Y+CFVLIT+F
Sbjct:   97 LDDADLAGPLVFCFLFGVCLLLAAKVHFGYIYGFGVLSCLFMYLLMNLLSP-ERTIDIYRVCSVLGYCLLPIVALAAVNIVVSVHNLGLAGFALASLAILWSSHTASRFFEKALYMTEQKYLVAYPIVLVYSCFVLITVF 235          
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: W7U1N9_9STRA (Protein YIPF n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1N9_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.910e-49
Identity = 88/138 (63.77%), Postives = 104/138 (75.36%), Query Frame = 1
Query:   13 LDDTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLRGAAGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            +DD DLAGPL F L FG  LL TGKVHFGYIYGFG+ GC+A  LVLNLLSP D  IDVW+ CS+LGY LLPVIGLA L + + L+G  G  LA   + W ++A+TRLFE+ L M  QR+LVAYPVAL+Y  FVLIT+F
Sbjct:  119 MDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSPKD--IDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254          
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: A0A1V9Y9B9_9STRA (Protein YIPF n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9B9_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.960e-49
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1
Query:   13 LDDTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLRGA--AGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            LDDTDLAGPLVFC IFG CLL +GK+HFGYIYGFG+FG V    ++NLLSP  + ID+++ CSVLGYCLLP+I LAA+N+++ ++G    G ALA  +V W +  ATR FE+ L M  QR+L+AYP A++Y+CFVLIT+F
Sbjct:  157 LDDTDLAGPLVFCFIFGTCLLLSGKIHFGYIYGFGVFGWVFMWAIMNLLSP-TRTIDIYRVCSVLGYCLLPIIFLAAVNIIISVKGLNLIGFALAVLSVAWSTHTATRFFEKALHMSEQRFLIAYPTAMVYSCFVLITVF 295          
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Match: K3WQV6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQV6_GLOUD)

HSP 1 Score: 166 bits (421), Expect = 4.840e-49
Identity = 80/140 (57.14%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   13 LDDTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVLNLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLR--GAAGLALAASAVLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF 426
            LDD DLAGPLVFC +FG CLL   KVHFGYIYGFG+  C+   L++NLLSP ++ ID+++ CSVLGYCLLP+IGLAA+N+V+ ++  G  G  LA+  +LW +  A+R FE+ L M  Q++L+AYP+ L+Y+CFVLIT+F
Sbjct:  112 LDDADLAGPLVFCFLFGMCLLLAAKVHFGYIYGFGVISCLFMYLLMNLLSP-ERTIDIYRVCSVLGYCLLPIIGLAAINIVVSVKDLGLVGFGLASLCILWSTHTASRFFEKALYMTEQKYLIAYPIVLVYSCFVLITVF 250          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14977.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ4_ECTSI4.410e-6573.24Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JG11_9PHAE4.660e-6573.24Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z6H4_9STRA8.180e-6068.35Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2TR42_9EUKA1.030e-5160.29Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641... [more]
A0A7S0DM30_9EUKA5.050e-5158.82Protein YIPF n=1 Tax=Amorphochlora amoebiformis Ta... [more]
A0A8K1CDX0_PYTOL6.570e-5160.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XGY6_9STRA2.740e-5059.29Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W7U1N9_9STRA1.910e-4963.77Protein YIPF n=3 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A1V9Y9B9_9STRA2.960e-4960.00Protein YIPF n=1 Tax=Achlya hypogyna TaxID=1202772... [more]
K3WQV6_GLOUD4.840e-4957.14Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14977contigP-wetherbeei_contig14977:46..1306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FRQ4
Preferred nameYIPF4
PFAMsYip1
Model size429
Max annot lvl2759|Eukaryota
KEGG koko:K20363
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons3
Evalue7.23e-66
EggNOG OGsCOG5080@1|root,KOG3103@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_003430.1
Descriptionvesicle-mediated transport
Cds size429
COG categoryU
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.1468613-CDS-P-wetherbeei_contig14977:45..1321683186039.1468613-CDS-P-wetherbeei_contig14977:45..132Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14977 46..132 +
1683186039.1600866-CDS-P-wetherbeei_contig14977:455..6001683186039.1600866-CDS-P-wetherbeei_contig14977:455..600Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14977 456..600 +
1683186039.1725087-CDS-P-wetherbeei_contig14977:1109..13061683186039.1725087-CDS-P-wetherbeei_contig14977:1109..1306Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14977 1110..1306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14977.1.1prot_P-wetherbeei_contig14977.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14977 46..1306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14977.1.1

>prot_P-wetherbeei_contig14977.1.1 ID=prot_P-wetherbeei_contig14977.1.1|Name=mRNA_P-wetherbeei_contig14977.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
DITYLDDTDLAGPLVFCLIFGACLLFTGKVHFGYIYGFGLFGCVATTLVL
NLLSPGDKPIDVWKTCSVLGYCLLPVIGLAALNVVMDLRGAAGLALAASA
VLWCSFAATRLFEQYLAMRPQRWLVAYPVALLYTCFVLITIF*
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mRNA from alignment at P-wetherbeei_contig14977:46..1306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14977.1.1 ID=mRNA_P-wetherbeei_contig14977.1.1|Name=mRNA_P-wetherbeei_contig14977.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1261bp|location=Sequence derived from alignment at P-wetherbeei_contig14977:46..1306+ (Phaeothamnion wetherbeei SAG_119_79)
GATATAACGTACCTGGACGACACGGATTTGGCGGGGCCGCTAGTCTTCTG CCTCATCTTCGGTGCATGTTTGCTCTTCACTGGAAAGGTTGGTTTTGCTG GGACAGGCAGGCAGCCACCCACGTTGGGCAACTTTTCCAGCACTATTCTC CTCTTTCTCTTTTTTAAGCTCTTTGTTTTGCATGAGCTGTCGTCGCTGCC AGTGCGGTGCGTCGAGTCTGTACGGACATAACCCGGCAGCAACAACTAAC TGGTCAATGGTTTTCATCCCGAGTGAATGTTTTGAACCTGCTGGCCTCTG CAAACGATCAGCAATCTCATCGATTGCTGACCTTATATCAACATGCGCTG GCCTGTGCATGTTCAATGACACGACGGCAAGCATGCCATAACAACACAAA CCTGTCACAGGTGCACTTTGGATACATATACGGGTTTGGGCTGTTCGGGT GTGTGGCAACGACCCTAGTTTTGAACCTGCTTTCGCCGGGCGACAAGCCC ATCGACGTGTGGAAGACTTGTAGCGTCCTCGGGTACTGCCTCCTCCCCGT CATTGGTGAGCAGAAAGCAGGAAAAGAAAACCCCAAAATTCCCTCTTGGC CAGGATCGTTTCGTTTTAATCTGCTGCCTTTTCTTCGTAGGGTTATTTCA ATGCGGGCTGCGCAGCCGCACGGCCATCCCCAAGTTGTTGTTGACAGTTT TGGCCTGTTTCGAACAGCCACCGTTTGGATCGGGCACGATTCTTCGGTCA TCGTTTCTTTGAGATTGATCTCTTTTTTAATCGTATTCTTTCTGTATATA CTTAAAAAAAGAAGACGAAAAATTCGGCTTGAGGCTTCGATCGCAGTTTG ACCTTTTGCAGTTGGAGGCTTCGCTGATCATAAAACGGCTGACCAGAACG TCTCCTCGCAACACCTTTCACCACTTTTCTCTCATCTCTTTCCGCCTCTC CTTCCCAAACTTCTATCCCCTTAACGGCGACCGCGTGGTGCGGGACGTTG CCTTCCCCCCTCGCCTGGCGCATGTTGGCCGCTCCGGTACTCCTCCAATC TGAGCTGCCTACAGGGCTGGCGGCGCTCAACGTGGTGATGGACCTGCGGG GTGCGGCGGGGCTGGCGCTGGCGGCGTCGGCCGTCCTGTGGTGCTCCTTT GCGGCGACGCGGCTCTTCGAGCAGTACCTCGCCATGCGGCCGCAGCGGTG GCTCGTGGCGTACCCTGTCGCGCTGCTCTACACGTGCTTTGTCCTCATCA CCATCTTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14977:46..1306+

>mRNA_P-wetherbeei_contig14977.1.1 ID=mRNA_P-wetherbeei_contig14977.1.1|Name=mRNA_P-wetherbeei_contig14977.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig14977:46..1306+ (Phaeothamnion wetherbeei SAG_119_79)
GATATAACGTACCTGGACGACACGGATTTGGCGGGGCCGCTAGTCTTCTG
CCTCATCTTCGGTGCATGTTTGCTCTTCACTGGAAAGGTGCACTTTGGAT
ACATATACGGGTTTGGGCTGTTCGGGTGTGTGGCAACGACCCTAGTTTTG
AACCTGCTTTCGCCGGGCGACAAGCCCATCGACGTGTGGAAGACTTGTAG
CGTCCTCGGGTACTGCCTCCTCCCCGTCATTGGGCTGGCGGCGCTCAACG
TGGTGATGGACCTGCGGGGTGCGGCGGGGCTGGCGCTGGCGGCGTCGGCC
GTCCTGTGGTGCTCCTTTGCGGCGACGCGGCTCTTCGAGCAGTACCTCGC
CATGCGGCCGCAGCGGTGGCTCGTGGCGTACCCTGTCGCGCTGCTCTACA
CGTGCTTTGTCCTCATCACCATCTTCTGA
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