mRNA_P-wetherbeei_contig14973.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14973.3.1
Unique NamemRNA_P-wetherbeei_contig14973.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14973.3.1 vs. uniprot
Match: A0A6H5JXA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.050e-7
Identity = 51/124 (41.13%), Postives = 60/124 (48.39%), Query Frame = 1 
Query:    4 AAPSSDAKAAEVGRL-----APFQTF---EHKLGFSAEHLLPLAHEAR-------REYCKARSAYKDACEAAPGESNA--------ALCPSVTRR--LMSTTRALLLVNADHNSVWNARKTLVL 300
            A P +DA  +E   L     AP   F   EHKLG S   + PL +EAR       REY + R A+    E  P E +A        AL         L+S TRALLLVNADH S WN RK LV+
Sbjct:   36 AGPPADAACSEETTLSSADVAPEPQFILQEHKLGVSVHSIHPLINEARGAFPVTRREYRRLRQAHSSR-ERMPSEESAKPKEGRGGALSDLAVAAGTLLSVTRALLLVNADHASAWNTRKQLVV 158
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BLAST of mRNA_P-wetherbeei_contig14973.3.1 vs. uniprot
Match: D7G9E1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E1_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.320e-6
Identity = 39/94 (41.49%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:   67 EHKLGFSAEHLLPLAHEAR-------REYCKARSAY--------KDACEAAPGESNAALCPSVTRR-LMSTTRALLLVNADHNSVWNARKTLVL 300
            EHKLG S   + PL +EAR       REY + R A+        +++ +   G   A    +V    L+S TRALLLVNADH S WN RK LV+
Sbjct:   77 EHKLGVSVHSIHPLINEARAAFPVARREYRRLRRAHSSLERMPSEESSKPKEGRGGALSGVAVAAATLLSVTRALLLVNADHGSAWNTRKQLVV 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14973.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXA5_9PHAE7.050e-741.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9E1_ECTSI1.320e-641.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14973contigP-wetherbeei_contig14973:1349..1651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog57918.XP_004304771.1
PFAMsPPTA
Model size303
Max annot lvl35493|Streptophyta
KEGG koko:K14137
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0018342,GO:0019538,GO:0032991,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0097354,GO:1901564,GO:1902494,GO:1990234
Exons1
Evalue9.23e-09
EggNOG OGsCOG5536@1|root,KOG0529@2759|Eukaryota,37J6W@33090|Viridiplantae,3G7CU@35493|Streptophyta,4JGNV@91835|fabids
DescriptionProtein prenyltransferase alpha subunit repeat-containing protein
Cds size303
COG categoryO
BRITEko00000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.0755954-CDS-P-wetherbeei_contig14973:1348..16511683186039.0755954-CDS-P-wetherbeei_contig14973:1348..1651Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14973 1349..1651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14973.3.1prot_P-wetherbeei_contig14973.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14973 1349..1651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14973.3.1

>prot_P-wetherbeei_contig14973.3.1 ID=prot_P-wetherbeei_contig14973.3.1|Name=mRNA_P-wetherbeei_contig14973.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
SAAPSSDAKAAEVGRLAPFQTFEHKLGFSAEHLLPLAHEARREYCKARSA
YKDACEAAPGESNAALCPSVTRRLMSTTRALLLVNADHNSVWNARKTLVL
R
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mRNA from alignment at P-wetherbeei_contig14973:1349..1651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14973.3.1 ID=mRNA_P-wetherbeei_contig14973.3.1|Name=mRNA_P-wetherbeei_contig14973.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig14973:1349..1651+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGCCGCTCCAAGCAGTGATGCGAAAGCAGCAGAGGTGGGAAGGCTTGC
GCCATTCCAGACTTTCGAGCATAAGCTAGGATTCTCGGCAGAACACCTCT
TGCCACTGGCCCACGAAGCTCGTCGAGAGTACTGCAAGGCGCGCAGCGCG
TACAAGGATGCCTGTGAAGCAGCACCTGGCGAAAGCAATGCTGCGCTCTG
TCCGAGTGTCACACGGCGGCTGATGTCGACGACGCGCGCCCTGCTGCTCG
TCAACGCCGATCACAACTCAGTGTGGAATGCGCGCAAGACGCTTGTGCTG
CGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14973:1349..1651+

>mRNA_P-wetherbeei_contig14973.3.1 ID=mRNA_P-wetherbeei_contig14973.3.1|Name=mRNA_P-wetherbeei_contig14973.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig14973:1349..1651+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGCCGCTCCAAGCAGTGATGCGAAAGCAGCAGAGGTGGGAAGGCTTGC
GCCATTCCAGACTTTCGAGCATAAGCTAGGATTCTCGGCAGAACACCTCT
TGCCACTGGCCCACGAAGCTCGTCGAGAGTACTGCAAGGCGCGCAGCGCG
TACAAGGATGCCTGTGAAGCAGCACCTGGCGAAAGCAATGCTGCGCTCTG
TCCGAGTGTCACACGGCGGCTGATGTCGACGACGCGCGCCCTGCTGCTCG
TCAACGCCGATCACAACTCAGTGTGGAATGCGCGCAAGACGCTTGTGCTG
CGC
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