mRNA_P-wetherbeei_contig14966.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14966.1.1
Unique NamemRNA_P-wetherbeei_contig14966.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14966.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14966contigP-wetherbeei_contig14966:526..1659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1134
Hectar predicted targeting categorymitochondrion
Exons1
Cds size756
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.770022-UTR-P-wetherbeei_contig14966:525..5881683186038.770022-UTR-P-wetherbeei_contig14966:525..588Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14966 526..588 -
1683186038.7889748-UTR-P-wetherbeei_contig14966:1344..16591683186038.7889748-UTR-P-wetherbeei_contig14966:1344..1659Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14966 1345..1659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.7797804-CDS-P-wetherbeei_contig14966:588..13441683186038.7797804-CDS-P-wetherbeei_contig14966:588..1344Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14966 589..1344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14966.1.1prot_P-wetherbeei_contig14966.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14966 589..1344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14966.1.1

>prot_P-wetherbeei_contig14966.1.1 ID=prot_P-wetherbeei_contig14966.1.1|Name=mRNA_P-wetherbeei_contig14966.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp
MQLSLQVRPCFLRSAQRYLAVAHKGFLTTVSCAAGCGGGSEYVGVDAVEN
DLVTALLTPFLENAVALTALFPGEKRRGFGRGSAAAGDADAKNSWASVPV
ATARVAVMDPSAVVVGDKDIDLSFDSIRFDMYVDRDGGDGGGGGKSDSDD
RWKTRIVVLDALPFILGDGVPPKAGNSFLFDADRDAAALAGESGPKTEEG
WSYVDVAQRCRSSSSIEMTRALQHVYVTAEGRVVTLRWAQQRAVGKASAS
G*
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mRNA from alignment at P-wetherbeei_contig14966:526..1659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14966.1.1 ID=mRNA_P-wetherbeei_contig14966.1.1|Name=mRNA_P-wetherbeei_contig14966.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1134bp|location=Sequence derived from alignment at P-wetherbeei_contig14966:526..1659- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTGGACGGTGGAGGCGTTTCAAGCAAGCAGCGGTCGCGCCGTTGGAG
AGTGCGCTCCCGCTCGCCGCAGCCGCCTGACAAGAGCCCGAATGGCGACG
GACAGGTGGCAGCGAGAAATGGAGCGTCTGCCCCGCGAAGCAACGACTCC
CTGCTCCAGCAGCAGACGCTGAACCTCGTGGCCAGCGCTGGCAGCCGGGA
GGCCCTGGCTCTGCTGCTCCAGAGCCCTTCAACCCTGCGTGCGCTGGGGG
AAGCGGCCCACCTCTGCGAAGTCGCGTCGGGCGTCGTATGGCCCGGCGAC
TGGCGACCGTTCCCCATGCAGCTGTCGCTCCAGGTGCGGCCATGCTTTCT
GCGGAGCGCCCAACGGTATCTTGCCGTGGCACACAAAGGGTTTCTTACTA
CTGTCAGCTGCGCGGCGGGGTGCGGCGGCGGCAGCGAATATGTTGGCGTC
GACGCCGTGGAAAACGACTTGGTCACTGCGCTTCTCACTCCGTTTCTCGA
GAACGCCGTAGCTTTGACCGCATTGTTCCCGGGAGAAAAGCGGCGCGGCT
TTGGCCGCGGCTCCGCGGCGGCGGGTGATGCCGACGCCAAAAACTCTTGG
GCGTCGGTTCCTGTGGCAACGGCACGCGTTGCCGTGATGGATCCCAGCGC
CGTTGTCGTGGGAGACAAAGACATCGACCTTAGTTTCGACTCGATCCGCT
TTGACATGTACGTCGACAGAGATGGCGGTGATGGCGGCGGCGGCGGCAAG
TCAGATAGCGATGACCGTTGGAAGACGCGGATAGTGGTGCTGGATGCATT
ACCCTTCATTCTCGGCGACGGTGTGCCGCCGAAGGCAGGCAATTCCTTTC
TCTTTGACGCGGACCGCGACGCGGCGGCACTGGCCGGAGAATCGGGCCCG
AAGACGGAGGAGGGATGGTCGTACGTCGACGTGGCGCAGCGGTGCCGCAG
CAGTAGTAGTATCGAGATGACACGGGCACTTCAACATGTCTATGTGACGG
CTGAAGGGCGGGTCGTGACGCTGCGTTGGGCGCAGCAACGTGCCGTCGGC
AAAGCTTCAGCTTCGGGATGAAGAGAGTGCGAGTTTGGCCGAAGCCTCAC
GGTTTACTACTAAAAACTTTCACCCAAACGCCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14966:526..1659-

>mRNA_P-wetherbeei_contig14966.1.1 ID=mRNA_P-wetherbeei_contig14966.1.1|Name=mRNA_P-wetherbeei_contig14966.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig14966:526..1659- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTGTCGCTCCAGGTGCGGCCATGCTTTCTGCGGAGCGCCCAACG
GTATCTTGCCGTGGCACACAAAGGGTTTCTTACTACTGTCAGCTGCGCGG
CGGGGTGCGGCGGCGGCAGCGAATATGTTGGCGTCGACGCCGTGGAAAAC
GACTTGGTCACTGCGCTTCTCACTCCGTTTCTCGAGAACGCCGTAGCTTT
GACCGCATTGTTCCCGGGAGAAAAGCGGCGCGGCTTTGGCCGCGGCTCCG
CGGCGGCGGGTGATGCCGACGCCAAAAACTCTTGGGCGTCGGTTCCTGTG
GCAACGGCACGCGTTGCCGTGATGGATCCCAGCGCCGTTGTCGTGGGAGA
CAAAGACATCGACCTTAGTTTCGACTCGATCCGCTTTGACATGTACGTCG
ACAGAGATGGCGGTGATGGCGGCGGCGGCGGCAAGTCAGATAGCGATGAC
CGTTGGAAGACGCGGATAGTGGTGCTGGATGCATTACCCTTCATTCTCGG
CGACGGTGTGCCGCCGAAGGCAGGCAATTCCTTTCTCTTTGACGCGGACC
GCGACGCGGCGGCACTGGCCGGAGAATCGGGCCCGAAGACGGAGGAGGGA
TGGTCGTACGTCGACGTGGCGCAGCGGTGCCGCAGCAGTAGTAGTATCGA
GATGACACGGGCACTTCAACATGTCTATGTGACGGCTGAAGGGCGGGTCG
TGACGCTGCGTTGGGCGCAGCAACGTGCCGTCGGCAAAGCTTCAGCTTCG
GGATGA
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