mRNA_P-wetherbeei_contig1495.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig1495.1.1
Unique Name	mRNA_P-wetherbeei_contig1495.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: A0A836C473_9CHLO (RWP-RK domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C473_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 5.630e-6
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1

Query:  319 PMDLASPSPRRNARCEALDRLTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPHRHLARIDATIRRL 543
            P  L+S +  RN  C  +  +T  +++ +Y + +E+AA+ LG+ +T+ K  CR LG+ RWP R L  +D  I  L
Sbjct:  535 PDKLSSRASARNGVCARIASITKERLQQVYHLNIEEAARELGIGMTKLKEHCRTLGIPRWPSRKLKSMDKLIESL 609

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BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: A0A7S0HLJ5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HLJ5_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 7.310e-6
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1

Query:  340 SPRRNARCEALDRLTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPHRHLARI 522
            SP++N R      L    ++GL+ +    AA+SLG+S+T FK ACRRLGV RWP+    RI
Sbjct:   32 SPQKNTRGI---NLVYATVQGLFHLPQSKAAESLGLSLTAFKAACRRLGVPRWPYERKRRI 89

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BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: L1JKR9_GUITC (RWP-RK domain-containing protein n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKR9_GUITC)

HSP 1 Score: 53.5 bits (127), Expect = 1.980e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1

Query:  376 RLTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPHRHL 513
            +L +T IE L+ M  EDAAK LG+S+T  K+ACR LG+ RWP+  L
Sbjct:   28 QLDLTIIEPLFHMRQEDAAKFLGISLTSLKKACRMLGIQRWPYARL 73

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BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: A0A8J4C4B1_9CHLO (RWP-RK domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C4B1_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.350e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1

Query:  349 RNARCEALDRLTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPHRHLARIDATIRRL 543
            RN  C  +  +T  +++ +Y + +E+AA+ LG+ +T+ K  CR LG+ RWP R L  +D  I  L
Sbjct:  451 RNGLCARIASITKERLQQVYHLNIEEAARELGIGMTKLKEHCRTLGIPRWPSRKLKSMDKLIESL 515

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BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: L1J425_GUITC (RWP-RK domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J425_GUITC)

HSP 1 Score: 52.0 bits (123), Expect = 2.380e-5
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1

Query:  337 PSPRRNARCEALDR---LTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPH 504
            P PR++     L R   L    ++GL+ +  E+AA+ LGV +T FK ACRRLG+ RWP+
Sbjct:   10 PRPRKHTSPATLQREVTLDAQLLQGLFHVRQEEAAEQLGVCLTSFKAACRRLGIQRWPY 68

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BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: A0A150H3T5_GONPE (RWP-RK domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3T5_GONPE)

HSP 1 Score: 53.9 bits (128), Expect = 2.390e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1

Query:  349 RNARCEALDRLTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPHRHLARIDATIRRL 543
            RN  C  +  +T  +++ +Y + +E+AA+ LG+ +T+ K  CR LG+ RWP R L  +D  I  L
Sbjct:   11 RNGVCARIASITKERLQQVYHLNIEEAARELGIGMTKLKEHCRTLGIPRWPSRKLKSMDKLIESL 75

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BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: A0A8J4APB1_9CHLO (RWP-RK domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APB1_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1

Query:  349 RNARCEALDRLTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPHRHLARIDATIRRL 543
            RN  C  +  +T  +++ +Y + +E+AA+ LG+ +T+ K  CR LG+ RWP R L  +D  I  L
Sbjct:  645 RNGLCARIASITKERLQQVYHLNIEEAARELGIGMTKLKEHCRTLGIPRWPSRKLKSMDKLIESL 709

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BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: L1J3K1_GUITC (RWP-RK domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J3K1_GUITC)

HSP 1 Score: 52.0 bits (123), Expect = 2.560e-5
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1

Query:  337 PSPRRNARCEALDR---LTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPH 504
            P PR++     L R   L    ++GL+ +  E+AA+ LGV +T FK ACRRLG+ RWP+
Sbjct:   10 PRPRKHTSPATLQREVTLDAQLLQGLFHVRQEEAAEQLGVCLTSFKAACRRLGIQRWPY 68

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BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: D8TJX2_VOLCA (RWP-RK domain-containing transcription factor n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TJX2_VOLCA)

HSP 1 Score: 54.3 bits (129), Expect = 2.570e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1

Query:  349 RNARCEALDRLTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPHRHLARIDATIRRL 543
            RN  C  +  +T  +++ +Y + +E+AA+ LG+ +T+ K  CR LG+ RWP R L  +D  I  L
Sbjct:  587 RNGLCARIASITKERLQQVYHLNIEEAARELGIGMTKLKEHCRTLGIPRWPSRKLKSMDKLIESL 651

[Close]

BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Match: A0A8J4ALJ2_9CHLO (RWP-RK domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ALJ2_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.590e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1

Query:  349 RNARCEALDRLTITQIEGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPHRHLARIDATIRRL 543
            RN  C  +  +T  +++ +Y + +E+AA+ LG+ +T+ K  CR LG+ RWP R L  +D  I  L
Sbjct:  645 RNGLCARIASITKERLQQVYHLNIEEAARELGIGMTKLKEHCRTLGIPRWPSRKLKSMDKLIESL 709

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig1495.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22


Match Name	E-value	Identity	Description
A0A836C473_9CHLO	5.630e-6	36.00	RWP-RK domain-containing protein n=1 Tax=Edaphochl...	[more]
A0A7S0HLJ5_9CRYP	7.310e-6	45.90	Hypothetical protein (Fragment) n=1 Tax=Hanusia ph...	[more]
L1JKR9_GUITC	1.980e-5	54.35	RWP-RK domain-containing protein n=2 Tax=Guillardi...	[more]
A0A8J4C4B1_9CHLO	2.350e-5	36.92	RWP-RK domain-containing protein n=1 Tax=Volvox re...	[more]
L1J425_GUITC	2.380e-5	44.07	RWP-RK domain-containing protein n=1 Tax=Guillardi...	[more]
A0A150H3T5_GONPE	2.390e-5	36.92	RWP-RK domain-containing protein n=1 Tax=Gonium pe...	[more]
A0A8J4APB1_9CHLO	2.490e-5	36.92	RWP-RK domain-containing protein n=1 Tax=Volvox af...	[more]
L1J3K1_GUITC	2.560e-5	44.07	RWP-RK domain-containing protein n=1 Tax=Guillardi...	[more]
D8TJX2_VOLCA	2.570e-5	36.92	RWP-RK domain-containing transcription factor n=1 ...	[more]
A0A8J4ALJ2_9CHLO	2.590e-5	36.92	RWP-RK domain-containing protein n=2 Tax=Volvox af...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig1495	contig	P-wetherbeei_contig1495:328..1153 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	29730.Gorai.011G138700.1
PFAMs	PB1,RWP-RK
Model size	548
Max annot lvl	35493\|Streptophyta
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003700,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Exons	2
Evalue	3.02e-07
EggNOG OGs	2CMF0@1\|root,2QQ6H@2759\|Eukaryota,37M05@33090\|Viridiplantae,3GE97@35493\|Streptophyta
Description	transcription, DNA-templated
Cds size	450
COG category	K

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186038.4120536-CDS-P-wetherbeei_contig1495:327..443	1683186038.4120536-CDS-P-wetherbeei_contig1495:327..443	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig1495 328..443 -
1683186038.422547-CDS-P-wetherbeei_contig1495:723..1057	1683186038.422547-CDS-P-wetherbeei_contig1495:723..1057	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig1495 724..1057 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186038.4318285-UTR-P-wetherbeei_contig1495:1057..1153	1683186038.4318285-UTR-P-wetherbeei_contig1495:1057..1153	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig1495 1058..1153 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig1495.1.1	prot_P-wetherbeei_contig1495.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig1495 328..1057 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig1495:328..1153-
coding sequence from alignment at P-wetherbeei_contig1495:328..1153-

protein sequence of mRNA_P-wetherbeei_contig1495.1.1

>prot_P-wetherbeei_contig1495.1.1 ID=prot_P-wetherbeei_contig1495.1.1|Name=mRNA_P-wetherbeei_contig1495.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
MSHQRFFSGFHQRIESTDWESLLESPDILTESDIPDLDFMDYETSNVIAL
EESLLEDASALAKTDDANAPPSPAPMDLASPSPRRNARCEALDRLTITQI
EGLYAMTMEDAAKSLGVSVTRFKRACRRLGVARWPHRHLARIDATIRRLE

mRNA from alignment at P-wetherbeei_contig1495:328..1153-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig1495.1.1 ID=mRNA_P-wetherbeei_contig1495.1.1|Name=mRNA_P-wetherbeei_contig1495.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=826bp|location=Sequence derived from alignment at P-wetherbeei_contig1495:328..1153- (Phaeothamnion wetherbeei SAG_119_79)
GGGTTCGAATAACTACGGCGTAGACGCTGTCCTCCTTGCTTTCGTAAAAC
AGGAAGACATCAAAGCCTGCCCTTGCTCCAGGACAGGTGCTTCGCCATGA
GCCACCAGCGCTTCTTTTCTGGTTTTCACCAGAGGATCGAATCGACAGAT
TGGGAGTCTCTCCTCGAGTCACCTGATATCTTGACCGAGTCGGATATACC
TGACCTAGACTTCATGGACTACGAAACGAGCAACGTCATCGCTCTTGAAG
AAAGCCTTCTCGAAGACGCCAGCGCTTTGGCCAAGACGGACGACGCTAAT
GCCCCACCGTCTCCGGCGCCCATGGATCTCGCGTCCCCGTCGCCGCGACG
CAACGCGCGCTGCGAAGCTCTAGATCGCCTCACCATCACTCAGATCGAAG
GACTCTACGCGATGACGATGGAAGACGCAGGTCAGCCGCTTTTCCCTCCA
GCCATCAGCAGGAGACCCCACCGTGCACAATTGCGTTGATGTCTGCCGAA
ACTCCCGTTGGTATCATTTCTTTTCGCTCTCAGCTCGTATTGAAATAAAC
GGTCGTGGCATTCTGCGGTATAACCGGGCGAAACGCCGAGTACGTTGTAT
TTCTCTCTCCACCGGCGTTCATCACCTCACCTGCTTTCCAACCCTTCCCT
TGCTACTAACCCCTTGCATTCCTCCTTAAAACCCGCCGGCGGCTGCCGCA
AGCCCTACAGCGAAGAGCCTGGGCGTCAGCGTCACCCGTTTCAAACGGGC
GTGCCGCAGGCTAGGCGTCGCCCGATGGCCGCACCGCCACCTCGCCCGCA
TCGACGCCACCATCCGCCGCCTCGAA

Coding sequence (CDS) from alignment at P-wetherbeei_contig1495:328..1153-

>mRNA_P-wetherbeei_contig1495.1.1 ID=mRNA_P-wetherbeei_contig1495.1.1|Name=mRNA_P-wetherbeei_contig1495.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig1495:328..1153- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCACCAGCGCTTCTTTTCTGGTTTTCACCAGAGGATCGAATCGAC
AGATTGGGAGTCTCTCCTCGAGTCACCTGATATCTTGACCGAGTCGGATA
TACCTGACCTAGACTTCATGGACTACGAAACGAGCAACGTCATCGCTCTT
GAAGAAAGCCTTCTCGAAGACGCCAGCGCTTTGGCCAAGACGGACGACGC
TAATGCCCCACCGTCTCCGGCGCCCATGGATCTCGCGTCCCCGTCGCCGC
GACGCAACGCGCGCTGCGAAGCTCTAGATCGCCTCACCATCACTCAGATC
GAAGGACTCTACGCGATGACGATGGAAGACGCAGCGAAGAGCCTGGGCGT
CAGCGTCACCCGTTTCAAACGGGCGTGCCGCAGGCTAGGCGTCGCCCGAT
GGCCGCACCGCCACCTCGCCCGCATCGACGCCACCATCCGCCGCCTCGAA