mRNA_P-wetherbeei_contig14946.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14946.1.1
Unique NamemRNA_P-wetherbeei_contig14946.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14946.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14946contigP-wetherbeei_contig14946:430..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size176
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.3342052-UTR-P-wetherbeei_contig14946:429..4451683186038.3342052-UTR-P-wetherbeei_contig14946:429..445Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14946 430..445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.3461747-CDS-P-wetherbeei_contig14946:445..5171683186038.3461747-CDS-P-wetherbeei_contig14946:445..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14946 446..517 +
1683186038.3551228-CDS-P-wetherbeei_contig14946:793..8801683186038.3551228-CDS-P-wetherbeei_contig14946:793..880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14946 794..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14946.1.1prot_P-wetherbeei_contig14946.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14946 446..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14946.1.1

>prot_P-wetherbeei_contig14946.1.1 ID=prot_P-wetherbeei_contig14946.1.1|Name=mRNA_P-wetherbeei_contig14946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
MVWRVLQSAYVRLLQTIEKVVSTPISDGSVRAGGRRERSHRLRSCWDAAD
GAE
back to top

mRNA from alignment at P-wetherbeei_contig14946:430..880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14946.1.1 ID=mRNA_P-wetherbeei_contig14946.1.1|Name=mRNA_P-wetherbeei_contig14946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=451bp|location=Sequence derived from alignment at P-wetherbeei_contig14946:430..880+ (Phaeothamnion wetherbeei SAG_119_79)
ACGCGGTATCACCACAATGGTCTGGCGGGTCCTTCAATCCGCGTATGTCC
GTCTTCTTCAAACCATTGAAAAAGTTGTCTCGACTCCAGTGAGTGGAAAC
AACCTGACAGGTCTCTGGAGCTGTATCTCGCTCGCTTCCTCTTTATCTCC
TTTCTCTCTCCCCTCTTTCGTCGTTTGCAAACGATCGAATCCCTCTTTCT
ATTTCCTACCTCGCAGGCAACACCGGAGAACAACCCGTGAGTGTCAGCCA
CAGTTGGCTCTCTAACAATGATTCTCAATGTCACGCAACACCCTCGCATC
CTATCAAGCCATTTGGACATGGACACTCACAGGACTTCGTCCACCTTTAA
CCGTTGCTTTTCAGATTTCTGACGGGAGCGTACGCGCCGGTGGACGGAGA
GAGCGGTCCCACAGATTGCGAAGTTGTTGGGACGCTGCCGACGGCGCTGA
A
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14946:430..880+

>mRNA_P-wetherbeei_contig14946.1.1 ID=mRNA_P-wetherbeei_contig14946.1.1|Name=mRNA_P-wetherbeei_contig14946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig14946:430..880+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTGGCGGGTCCTTCAATCCGCGTATGTCCGTCTTCTTCAAACCAT
TGAAAAAGTTGTCTCGACTCCAATTTCTGACGGGAGCGTACGCGCCGGTG
GACGGAGAGAGCGGTCCCACAGATTGCGAAGTTGTTGGGACGCTGCCGAC
GGCGCTGAA
back to top