mRNA_P-wetherbeei_contig14942.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14942.1.1
Unique NamemRNA_P-wetherbeei_contig14942.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14942.1.1 vs. uniprot
Match: D7FZ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ23_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.250e-19
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    4 KIMDFAL-DVDDSSKTITLASCAKLGAVAALGIVGAYASVSPREAPWPVYSALYKRNLLLFAASLVGPAVLTAFMYDPRKANINLYISVFTAAFSTGYLAAFLIEVV 321
            K++D+   D     KT+TL S +++   A +   GA+ +VSP  AP  +Y AL++RNL L AASLVGPAV +  +YD  KANIN Y+ V T AF+ GYL +F +E+V
Sbjct:  428 KVLDYGRRDGTGPPKTLTLRSWSRIMGAAGIATAGAFLAVSPNNAPRDLYLALFRRNLGLIAASLVGPAVYSFLLYDGSKANINTYVRVVTFAFTWGYLISFALEIV 534
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BLAST of mRNA_P-wetherbeei_contig14942.1.1 vs. uniprot
Match: A0A6H5L6A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.580e-18
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:    4 KIMDFAL-DVDDSSKTITLASCAKLGAVAALGIVGAYASVSPREAPWPVYSALYKRNLLLFAASLVGPAVLTAFMYDPRKANINLYISVFTAAFSTGYLAAFLIEVV 321
            K++D+   D     KT+TL S +++   A +   GA+ +VSP  A   +Y AL++RNL L AASLVGPAV +  +YD  KANIN Y+ V T AF+ GYL +F +E+V
Sbjct:  583 KVLDYGRKDGTGPPKTLTLRSWSRITGAAGIATAGAFLAVSPNNAARDLYLALFRRNLGLIAASLVGPAVYSCLLYDGSKANINTYVRVVTFAFTWGYLISFALEIV 689
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14942.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ23_ECTSI3.250e-1946.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6A5_9PHAE1.580e-1845.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14942contigP-wetherbeei_contig14942:152..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZ23
Model size321
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.65e-19
EggNOG OGs2CZK1@1|root,2SAQY@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_001270.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.2066636-CDS-P-wetherbeei_contig14942:151..4631683186038.2066636-CDS-P-wetherbeei_contig14942:151..463Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14942 152..463 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.2162335-UTR-P-wetherbeei_contig14942:463..4721683186038.2162335-UTR-P-wetherbeei_contig14942:463..472Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14942 464..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14942.1.1prot_P-wetherbeei_contig14942.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14942 152..463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14942.1.1

>prot_P-wetherbeei_contig14942.1.1 ID=prot_P-wetherbeei_contig14942.1.1|Name=mRNA_P-wetherbeei_contig14942.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MDFALDVDDSSKTITLASCAKLGAVAALGIVGAYASVSPREAPWPVYSAL
YKRNLLLFAASLVGPAVLTAFMYDPRKANINLYISVFTAAFSTGYLAAFL
IEVV
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mRNA from alignment at P-wetherbeei_contig14942:152..472-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14942.1.1 ID=mRNA_P-wetherbeei_contig14942.1.1|Name=mRNA_P-wetherbeei_contig14942.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig14942:152..472- (Phaeothamnion wetherbeei SAG_119_79)
GGGAAGATCATGGACTTCGCGCTAGACGTTGACGACAGTTCGAAGACGAT
CACGCTGGCATCGTGCGCCAAGCTCGGCGCCGTCGCCGCGCTCGGCATCG
TCGGCGCCTACGCTTCCGTGTCTCCGCGCGAGGCGCCGTGGCCCGTCTAC
AGTGCTTTATACAAGCGCAACCTGCTGCTCTTCGCGGCGAGTTTGGTGGG
GCCGGCGGTGCTAACGGCGTTCATGTACGATCCCCGCAAGGCCAACATCA
ACCTGTACATTAGCGTCTTCACAGCGGCGTTTTCAACGGGCTACCTGGCC
GCCTTCCTCATCGAGGTCGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14942:152..472-

>mRNA_P-wetherbeei_contig14942.1.1 ID=mRNA_P-wetherbeei_contig14942.1.1|Name=mRNA_P-wetherbeei_contig14942.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig14942:152..472- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTTCGCGCTAGACGTTGACGACAGTTCGAAGACGATCACGCTGGC
ATCGTGCGCCAAGCTCGGCGCCGTCGCCGCGCTCGGCATCGTCGGCGCCT
ACGCTTCCGTGTCTCCGCGCGAGGCGCCGTGGCCCGTCTACAGTGCTTTA
TACAAGCGCAACCTGCTGCTCTTCGCGGCGAGTTTGGTGGGGCCGGCGGT
GCTAACGGCGTTCATGTACGATCCCCGCAAGGCCAACATCAACCTGTACA
TTAGCGTCTTCACAGCGGCGTTTTCAACGGGCTACCTGGCCGCCTTCCTC
ATCGAGGTCGTT
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