mRNA_P-wetherbeei_contig14936.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14936.1.1
Unique NamemRNA_P-wetherbeei_contig14936.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: A0A127ERP6_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ERP6_9HYPH)

HSP 1 Score: 296 bits (759), Expect = 3.490e-101
Identity = 141/166 (84.94%), Postives = 155/166 (93.37%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            MA   L E+SR NPLDVVERIAAINDWSFERAG+DEIT+LV GRWSDYQVSFTWM+DIEALHLACAFD+KVP+RR+ +VQ+LIA+INEQLWVGHFDLWS DGMVMFRH+LVLAGGV+AT QQCQALL++ALEACEGYFP FQFVVWAGKPAR ALDAAMFETSGEA
Sbjct:    1 MAQFQLPEQSRANPLDVVERIAAINDWSFERAGEDEITMLVGGRWSDYQVSFTWMHDIEALHLACAFDIKVPERRRNEVQRLIAMINEQLWVGHFDLWSSDGMVMFRHSLVLAGGVDATSQQCQALLASALEACEGYFPAFQFVVWAGKPARAALDAAMFETSGEA 166
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: UPI001E4E5E56 (YbjN domain-containing protein n=1 Tax=Leptospira sp. severe_002 TaxID=2838237 RepID=UPI001E4E5E56)

HSP 1 Score: 296 bits (757), Expect = 7.040e-101
Identity = 142/166 (85.54%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            MAL+  SE  R NPLDVVERIA+INDWSFERAGDDEITI+VAGRWSDYQVSFTWM++IEALHLACAFDLKVP+RR+ +V QLIA INEQLWVGHFDLW+ DG+VMFRHALVLAGGVEAT  QCQALLS+ALE+CEGYFP FQFVVWAGKPAREALDAAMFETSGEA
Sbjct:    1 MALSQYSEAPRTNPLDVVERIASINDWSFERAGDDEITIVVAGRWSDYQVSFTWMDNIEALHLACAFDLKVPERRRGEVAQLIAFINEQLWVGHFDLWTADGLVMFRHALVLAGGVEATSAQCQALLSSALESCEGYFPAFQFVVWAGKPAREALDAAMFETSGEA 166
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: A0A6L5FEA2_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FEA2_9HYPH)

HSP 1 Score: 279 bits (714), Expect = 2.520e-94
Identity = 131/166 (78.92%), Postives = 150/166 (90.36%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            M+L   SE+ RINPLDVVE +AA++DWSFERAGDDEI ILVAGRWSDYQVSFTWM DIEALHLACAF+LKVP+RR+ +VQQL++LINEQLWVGHFDLW QDG+VMFRHALVLAGGVE +G QC+++L TA++ACE YFP  QFVVWAGK AR+ALDAAMFETSGEA
Sbjct:    1 MSLIDFSEQPRINPLDVVEGMAAVHDWSFERAGDDEIIILVAGRWSDYQVSFTWMGDIEALHLACAFELKVPERRRAEVQQLMSLINEQLWVGHFDLWPQDGLVMFRHALVLAGGVEPSGGQCESVLGTAVDACERYFPALQFVVWAGKTARDALDAAMFETSGEA 166
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: A0A1Q4DJT2_9HYPH (Uncharacterized protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DJT2_9HYPH)

HSP 1 Score: 270 bits (690), Expect = 1.150e-90
Identity = 122/166 (73.49%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            M+L   +++ R +PL+V+ERIAA N+WSFERA DDEIT+LV+G+WSDYQVS+TWM DIEALHLACAFDL+VP+RR+P+VQ+LI++INEQ+WVGHFDLW+++G+VM+R+ALVLAGGVEA+G+QC+ALL TAL+ACE  FP +QFVVWAG+PAREALDAAMFETSGEA
Sbjct:    1 MSLVSYTDDQRSHPLEVIERIAAGNNWSFERASDDEITLLVSGKWSDYQVSYTWMCDIEALHLACAFDLRVPERRRPEVQKLISMINEQMWVGHFDLWTKEGLVMYRNALVLAGGVEASGKQCEALLGTALDACERNFPAYQFVVWAGRPAREALDAAMFETSGEA 166
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: A0A833GH49_9HYPH (Uncharacterized protein n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GH49_9HYPH)

HSP 1 Score: 267 bits (683), Expect = 1.340e-89
Identity = 122/166 (73.49%), Postives = 150/166 (90.36%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            M+L   ++  R++PLDVVE++AA NDWSFERAG+DEI IL+ GRWSDYQVSFTWM+++EALHLACAF+LKVP+RR+ +VQQLIA +NEQ+WVGHFDLW  DGMVMFRHALVL+GG+ A+ +QC+++LSTA+EACE YFP FQFV+WAGKPAREALDAA+FETSGEA
Sbjct:    1 MSLTDFNDVRRMSPLDVVEQLAAGNDWSFERAGEDEINILIKGRWSDYQVSFTWMDELEALHLACAFELKVPERRRAEVQQLIAQMNEQMWVGHFDLWPNDGMVMFRHALVLSGGLGASDEQCRSVLSTAVEACERYFPAFQFVLWAGKPAREALDAAIFETSGEA 166
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: A0A346A265_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A265_9HYPH)

HSP 1 Score: 266 bits (679), Expect = 5.440e-89
Identity = 122/166 (73.49%), Postives = 149/166 (89.76%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            M+L   +++S INPLDVVER+A+ NDWSFER GDDEITILV G+W+DYQ+S+TWM DIEALHLACAFDLKVP+RR+ +VQ LI++INE+LWVGH+DLW ++G+VMFRHALVLAGGVEA+G+QC++LL TA++ CE YF  FQFVVWAGK A+EALDAAMFETSGEA
Sbjct:    1 MSLTSYTDDSPINPLDVVERLASGNDWSFERLGDDEITILVTGKWTDYQLSYTWMCDIEALHLACAFDLKVPERRRAEVQALISMINERLWVGHYDLWIKEGIVMFRHALVLAGGVEASGRQCESLLGTAVDTCERYFSAFQFVVWAGKSAKEALDAAMFETSGEA 166
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: A0A537NI29_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NI29_9PROT)

HSP 1 Score: 265 bits (676), Expect = 1.560e-88
Identity = 123/166 (74.10%), Postives = 147/166 (88.55%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            M+L  LS E +INP+DVVER+A+++DWSF+RA DDEITI +AGRWSDYQVSFTWM++IEALHLACAFDLKVP+RR  +V+QL++ IN+QLWVGHFDLW  + +VMFRHALVLAGGV A+GQQC+A+L  ALEACE YF  FQFVVWAGK AREA+DAAMF+TSGEA
Sbjct:    1 MSLIDLSGERQINPVDVVERLASVHDWSFDRAADDEITIAIAGRWSDYQVSFTWMHEIEALHLACAFDLKVPERRNLEVRQLLSHINQQLWVGHFDLWPGESLVMFRHALVLAGGVAASGQQCEAVLEAALEACERYFQAFQFVVWAGKAAREAMDAAMFDTSGEA 166
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: A0A6N7GS85_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GS85_9HYPH)

HSP 1 Score: 263 bits (672), Expect = 6.340e-88
Identity = 118/166 (71.08%), Postives = 147/166 (88.55%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            M+L    ++SR NPL+VVER+A+ NDWSFERAG+DEIT++V G+W+DYQVSFTWM DIEALHLACAF+ KVP+R   + QQLIA+INEQ+W+GHFDLW++DG++M+RHALVLAGGVEA+  QC+ +LSTAL+ACE YFP +QFVVWAGK AREALDAA+FET+GEA
Sbjct:    1 MSLINFGDQSRANPLEVVERLASTNDWSFERAGEDEITLVVRGKWTDYQVSFTWMYDIEALHLACAFEFKVPERWCGETQQLIAMINEQMWIGHFDLWTKDGLIMYRHALVLAGGVEASRPQCEVMLSTALDACERYFPAYQFVVWAGKSAREALDAALFETAGEA 166
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: A0A537TMJ0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TMJ0_9PROT)

HSP 1 Score: 260 bits (665), Expect = 7.390e-87
Identity = 118/166 (71.08%), Postives = 145/166 (87.35%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            MAL   +E+   NPL+VVER+AA N WSFER G+DEITI+ AG+W+DYQVS+TWM  +EALHLACAF+LKVP+R   +VQQLI+LINEQ+W+GHFDLW+ DG+VM+RHAL+L GGVEA+G+QC+ALL+TAL+ACE YFP FQFVVWAGKPAR ALDAAMF+T G+A
Sbjct:    1 MALIDFAEQPHGNPLEVVERVAATNGWSFERGGEDEITIVAAGKWTDYQVSYTWMLHLEALHLACAFELKVPERCHAEVQQLISLINEQMWIGHFDLWTHDGLVMYRHALMLTGGVEASGRQCEALLATALDACERYFPAFQFVVWAGKPARTALDAAMFDTQGQA 166
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BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Match: A0A0Q7TXS1_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TXS1_9HYPH)

HSP 1 Score: 259 bits (662), Expect = 2.120e-86
Identity = 120/166 (72.29%), Postives = 144/166 (86.75%), Query Frame = 1 
Query:    1 MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQVSFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQDGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKPAREALDAAMFETSGEA 498
            M+L+  +++ R NPLDVVER+AA NDWSFERA DDEITILV+GRW++YQ+S+TWM DIEALHLACAFD+KVP+RR+ +VQ LIALINE+LWVGHFD W  +G+VMFRHAL L  G+E +GQQC+ LL TAL+ CE YF  FQFVVWAGKPA+EAL+AAMFETSGEA
Sbjct:    1 MSLSSYTDDVRYNPLDVVERLAAGNDWSFERASDDEITILVSGRWAEYQLSYTWMLDIEALHLACAFDIKVPERRRAEVQVLIALINERLWVGHFDQWPDEGLVMFRHALQLPSGMEPSGQQCEKLLGTALDTCERYFTAFQFVVWAGKPAKEALEAAMFETSGEA 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14936.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127ERP6_9HYPH3.490e-10184.94Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2... [more]
UPI001E4E5E567.040e-10185.54YbjN domain-containing protein n=1 Tax=Leptospira ... [more]
A0A6L5FEA2_9HYPH2.520e-9478.92Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A1Q4DJT2_9HYPH1.150e-9073.49Uncharacterized protein n=1 Tax=Rhizobiales bacter... [more]
A0A833GH49_9HYPH1.340e-8973.49Uncharacterized protein n=1 Tax=Pseudorhodoplanes ... [more]
A0A346A265_9HYPH5.440e-8973.49Uncharacterized protein n=1 Tax=Pseudolabrys taiwa... [more]
A0A537NI29_9PROT1.560e-8874.10Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A6N7GS85_9HYPH6.340e-8871.08Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A537TMJ0_9PROT7.390e-8771.08Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A0Q7TXS1_9HYPH2.120e-8672.29Uncharacterized protein n=1 Tax=Pseudolabrys sp. R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14936contigP-wetherbeei_contig14936:79..579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1187851.A33M_3037
Preferred nameMA20_05485
PFAMsYbjN
Model size501
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.83e-82
EggNOG OGsCOG5465@1|root,COG5465@2|Bacteria,1REC1@1224|Proteobacteria,2U7UP@28211|Alphaproteobacteria,3FD8J@34008|Rhodovulum
DescriptionPutative bacterial sensory transduction regulator
Cds size501
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.9857907-CDS-P-wetherbeei_contig14936:78..5791683186037.9857907-CDS-P-wetherbeei_contig14936:78..579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14936 79..579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14936.1.1prot_P-wetherbeei_contig14936.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14936 79..579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14936.1.1

>prot_P-wetherbeei_contig14936.1.1 ID=prot_P-wetherbeei_contig14936.1.1|Name=mRNA_P-wetherbeei_contig14936.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MALAGLSEESRINPLDVVERIAAINDWSFERAGDDEITILVAGRWSDYQV
SFTWMNDIEALHLACAFDLKVPDRRKPDVQQLIALINEQLWVGHFDLWSQ
DGMVMFRHALVLAGGVEATGQQCQALLSTALEACEGYFPGFQFVVWAGKP
AREALDAAMFETSGEA*
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mRNA from alignment at P-wetherbeei_contig14936:79..579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14936.1.1 ID=mRNA_P-wetherbeei_contig14936.1.1|Name=mRNA_P-wetherbeei_contig14936.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig14936:79..579+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTCGCCGGTCTCTCCGAAGAATCACGAATCAACCCCCTCGATGT
CGTCGAGCGGATCGCAGCGATCAACGACTGGTCGTTCGAGCGCGCGGGCG
ACGACGAGATCACCATCCTGGTCGCCGGCCGCTGGAGCGACTACCAGGTG
TCCTTCACCTGGATGAACGACATCGAGGCGCTGCACCTGGCCTGCGCCTT
CGACCTCAAGGTGCCGGACCGCCGCAAGCCGGACGTGCAGCAACTCATCG
CGCTCATCAACGAGCAACTGTGGGTCGGCCATTTCGACCTCTGGAGCCAG
GACGGCATGGTGATGTTCCGCCATGCGCTGGTGCTGGCGGGCGGGGTCGA
GGCCACCGGGCAGCAGTGCCAGGCGCTGCTGTCGACCGCGCTCGAAGCCT
GCGAGGGCTATTTCCCAGGTTTCCAGTTCGTGGTCTGGGCCGGCAAGCCG
GCCCGCGAAGCGCTCGACGCCGCTATGTTCGAGACCTCCGGCGAAGCCTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14936:79..579+

>mRNA_P-wetherbeei_contig14936.1.1 ID=mRNA_P-wetherbeei_contig14936.1.1|Name=mRNA_P-wetherbeei_contig14936.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig14936:79..579+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTCGCCGGTCTCTCCGAAGAATCACGAATCAACCCCCTCGATGT
CGTCGAGCGGATCGCAGCGATCAACGACTGGTCGTTCGAGCGCGCGGGCG
ACGACGAGATCACCATCCTGGTCGCCGGCCGCTGGAGCGACTACCAGGTG
TCCTTCACCTGGATGAACGACATCGAGGCGCTGCACCTGGCCTGCGCCTT
CGACCTCAAGGTGCCGGACCGCCGCAAGCCGGACGTGCAGCAACTCATCG
CGCTCATCAACGAGCAACTGTGGGTCGGCCATTTCGACCTCTGGAGCCAG
GACGGCATGGTGATGTTCCGCCATGCGCTGGTGCTGGCGGGCGGGGTCGA
GGCCACCGGGCAGCAGTGCCAGGCGCTGCTGTCGACCGCGCTCGAAGCCT
GCGAGGGCTATTTCCCAGGTTTCCAGTTCGTGGTCTGGGCCGGCAAGCCG
GCCCGCGAAGCGCTCGACGCCGCTATGTTCGAGACCTCCGGCGAAGCCTG
A
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