mRNA_P-wetherbeei_contig1492.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1492.1.1
Unique NamemRNA_P-wetherbeei_contig1492.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1492.1.1 vs. uniprot
Match: A0A2G2JVB1_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2JVB1_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 7.270e-5
Identity = 49/147 (33.33%), Postives = 66/147 (44.90%), Query Frame = 1 
Query:  907 VTRVAFAPNGKSLLTCSQ-DKAVKLWVSLDQTGGISSVGRNGDGIDGIGSIGRNAGGGGXXXXXXXXXXXXXXXXXXXXXXXSRPCRHLCTYRGHRDSVTSVAWNSQSTLFASGSADRTVVVWRPSSTEPLHVLRGGHQLEIGCVCF 1344
            VT +AFAP+G SL+ CSQ    V  W  L Q   I     N   I    S  R A  GG                           + L  +R H DSVT+VAW ++++L A+ S D TV +W   S +P+H L+G H   +  +CF
Sbjct:   27 VTSIAFAPDGNSLVACSQAGLQVYSWPELVQQKRIEVSAVNLHDIAFSPSGDRLAVAGGSPAEDGSVEIFSWPEG-----------KSLHLFRNHTDSVTTVAWRNETSL-ATASLDYTVNIWDIKSEKPIHTLQG-HSRGVSSICF 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1492.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2G2JVB1_9BACT7.270e-533.33Uncharacterized protein n=1 Tax=Blastopirellula sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1492contigP-wetherbeei_contig1492:4599..6539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7955.ENSDARP00000105402
Preferred nameWDSUB1
PFAMsSAM_1,SAM_2,U-box,WD40
Model size1807
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.86e-08
EggNOG OGsKOG4155@1|root,KOG4155@2759|Eukaryota,38F9N@33154|Opisthokonta,3BHBH@33208|Metazoa,3CX0Z@33213|Bilateria,48BIB@7711|Chordata,4925N@7742|Vertebrata,49WZG@7898|Actinopterygii
DescriptionWD repeat, sterile alpha motif and U-box domain containing 1
Cds size1413
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.513712-UTR-P-wetherbeei_contig1492:4598..48111683186037.513712-UTR-P-wetherbeei_contig1492:4598..4811Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1492 4599..4811 +
1683186037.554115-UTR-P-wetherbeei_contig1492:6358..65391683186037.554115-UTR-P-wetherbeei_contig1492:6358..6539Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1492 6359..6539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.5313249-CDS-P-wetherbeei_contig1492:4811..52321683186037.5313249-CDS-P-wetherbeei_contig1492:4811..5232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1492 4812..5232 +
1683186037.542639-CDS-P-wetherbeei_contig1492:5366..63581683186037.542639-CDS-P-wetherbeei_contig1492:5366..6358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1492 5367..6358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1492.1.1prot_P-wetherbeei_contig1492.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1492 4812..6358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1492.1.1

>prot_P-wetherbeei_contig1492.1.1 ID=prot_P-wetherbeei_contig1492.1.1|Name=mRNA_P-wetherbeei_contig1492.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=471bp
MRHAPPPRKKGASGRVVVVAPASDDNAVPPASPQAAAAGGPTAAKEAGFQ
QAADCQHEHGFSKFEPTTMWISAHGEGALWACISARGNYLASCGADGTAV
IWYVRSANRGFIRLVLPPPPRDVVQCTFSPDEEHLVVASGDVLTVWLSSK
GILRHTILVPLTPNAALTGVDWSPDGSTLASCSSDAHVCIWGLHEALRRG
GRITSSSAGAAAPDGALLADLSLEENAHTQWVTRVAFAPNGKSLLTCSQD
KAVKLWVSLDQTGGISSVGRNGDGIDGIGSIGRNAGGGGIGSIGRNAGGG
GIGSIGRNAGGGSRPCRHLCTYRGHRDSVTSVAWNSQSTLFASGSADRTV
VVWRPSSTEPLHVLRGGHQLEIGCVCFCHHSTASAGCLVSCGRDRYMCFF
DVTSTKAKLREQIPTGSDRRTTCVSFHTTETALVTASAGKEASLLLWRPC
SSWLVWWRRLIALWRGIWFD*
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mRNA from alignment at P-wetherbeei_contig1492:4599..6539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1492.1.1 ID=mRNA_P-wetherbeei_contig1492.1.1|Name=mRNA_P-wetherbeei_contig1492.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1941bp|location=Sequence derived from alignment at P-wetherbeei_contig1492:4599..6539+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCCGTGTGCCCTTCGGTGGACTTCGCGCCACCTTGTGCGCGTCCCGTG
GCCCCTCGACCACGGCGCCCTTCACGAGAGCAGCGGGAGAGCAGCGGAGC
TAGGGTTCTCCTAACCGAAGCATCGACAGTTAGCGTGCAAGCCTCGAGAA
TCGTTCAGAGAAAACACCCCCGCGCCTCATTTTCCTCGCCGACGACGATT
TCACTAACATGGTATGAGACACGCCCCCCCGCCTCGCAAGAAGGGAGCCA
GTGGCCGTGTCGTAGTCGTCGCGCCAGCTTCGGACGACAACGCAGTTCCT
CCGGCCTCTCCACAAGCTGCCGCTGCTGGTGGCCCAACCGCGGCAAAAGA
AGCTGGTTTTCAACAAGCTGCTGATTGCCAGCATGAGCACGGCTTTTCAA
AGTTTGAGCCCACCACAATGTGGATCAGTGCCCACGGTGAAGGGGCGTTG
TGGGCATGCATCTCGGCACGAGGAAACTACCTTGCTAGCTGCGGCGCCGA
CGGCACTGCCGTCATTTGGTACGTGCGCTCGGCGAATCGCGGCTTCATCC
GGCTCGTTCTGCCCCCGCCGCCCCGCGACGTCGTGCAGTGCACATTTTCG
CCGGACGAGGAGCACCTGGTGGTTGCCTCTGGAGGTAAGTTGCAGAGCTC
AACGCAGGGCACCTTTGGGTATTTTTCTTTCACAAAGCTCCTATAATGCT
CGCCGGTTCTGAACGAAACTTGTGCATTTCCGCCGCCGCCGCCGCTTTCA
CCCCGCTAAAACCTCTAGACGTCTTGACCGTGTGGCTGTCTTCGAAGGGC
ATCCTCCGACACACCATCCTGGTGCCACTCACCCCCAACGCCGCCCTCAC
CGGCGTCGACTGGTCGCCCGACGGCTCTACCCTCGCCTCATGCTCCTCCG
ACGCCCACGTCTGCATCTGGGGTCTCCACGAAGCGTTGCGCCGCGGCGGC
CGCATCACCTCGTCATCTGCGGGGGCAGCGGCGCCCGACGGCGCTCTGCT
GGCAGATTTGTCGCTGGAAGAGAACGCTCATACACAGTGGGTGACACGTG
TCGCCTTTGCGCCCAACGGAAAGAGCCTCCTGACGTGCTCGCAGGACAAG
GCGGTCAAGCTCTGGGTCTCTCTGGATCAGACAGGCGGCATCAGCAGCGT
CGGCCGCAACGGCGACGGCATCGACGGCATCGGCAGCATCGGCCGTAACG
CCGGCGGCGGCGGCATTGGTAGCATCGGCCGTAACGCTGGCGGCGGCGGC
ATTGGCAGCATCGGCCGTAACGCCGGCGGCGGCAGCCGCCCGTGCCGCCA
CCTGTGCACCTACCGCGGCCACAGAGACTCTGTAACGAGCGTGGCGTGGA
ACAGCCAGTCGACGCTCTTCGCGTCCGGCAGCGCCGACCGGACCGTCGTC
GTCTGGCGGCCGTCCAGCACGGAACCACTTCATGTCTTGCGTGGCGGTCA
CCAGCTCGAGATAGGCTGCGTCTGCTTCTGCCACCATTCGACCGCCAGTG
CCGGCTGCCTCGTGTCCTGCGGCCGCGACCGCTACATGTGCTTTTTCGAC
GTTACGTCCACCAAGGCCAAGCTACGGGAGCAGATCCCAACGGGGAGCGA
CCGGCGGACGACATGCGTTTCGTTCCACACGACGGAGACGGCGCTGGTAA
CGGCGAGCGCCGGCAAGGAGGCGTCGCTGCTTCTGTGGCGGCCGTGCTCG
TCGTGGCTCGTGTGGTGGCGGCGCCTCATCGCGCTGTGGCGGGGCATCTG
GTTCGACTGAGAGGATTTGCGATAGGGATAGAGCTAAGGCTGCTGAACAG
CATCTGACGGCAGGCTCTTCTTCGTAGCAAAACTTAAAACGGAACAGAGG
TCGGCTGTGGGGCCGGTACGGCGCTGGCTGCGTTCGACAGTAGCAATTTT
AAAGGCTTATTTTCCATTATAAAAAACAAGTAAAAGACGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1492:4599..6539+

>mRNA_P-wetherbeei_contig1492.1.1 ID=mRNA_P-wetherbeei_contig1492.1.1|Name=mRNA_P-wetherbeei_contig1492.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1413bp|location=Sequence derived from alignment at P-wetherbeei_contig1492:4599..6539+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGACACGCCCCCCCGCCTCGCAAGAAGGGAGCCAGTGGCCGTGTCGT
AGTCGTCGCGCCAGCTTCGGACGACAACGCAGTTCCTCCGGCCTCTCCAC
AAGCTGCCGCTGCTGGTGGCCCAACCGCGGCAAAAGAAGCTGGTTTTCAA
CAAGCTGCTGATTGCCAGCATGAGCACGGCTTTTCAAAGTTTGAGCCCAC
CACAATGTGGATCAGTGCCCACGGTGAAGGGGCGTTGTGGGCATGCATCT
CGGCACGAGGAAACTACCTTGCTAGCTGCGGCGCCGACGGCACTGCCGTC
ATTTGGTACGTGCGCTCGGCGAATCGCGGCTTCATCCGGCTCGTTCTGCC
CCCGCCGCCCCGCGACGTCGTGCAGTGCACATTTTCGCCGGACGAGGAGC
ACCTGGTGGTTGCCTCTGGAGACGTCTTGACCGTGTGGCTGTCTTCGAAG
GGCATCCTCCGACACACCATCCTGGTGCCACTCACCCCCAACGCCGCCCT
CACCGGCGTCGACTGGTCGCCCGACGGCTCTACCCTCGCCTCATGCTCCT
CCGACGCCCACGTCTGCATCTGGGGTCTCCACGAAGCGTTGCGCCGCGGC
GGCCGCATCACCTCGTCATCTGCGGGGGCAGCGGCGCCCGACGGCGCTCT
GCTGGCAGATTTGTCGCTGGAAGAGAACGCTCATACACAGTGGGTGACAC
GTGTCGCCTTTGCGCCCAACGGAAAGAGCCTCCTGACGTGCTCGCAGGAC
AAGGCGGTCAAGCTCTGGGTCTCTCTGGATCAGACAGGCGGCATCAGCAG
CGTCGGCCGCAACGGCGACGGCATCGACGGCATCGGCAGCATCGGCCGTA
ACGCCGGCGGCGGCGGCATTGGTAGCATCGGCCGTAACGCTGGCGGCGGC
GGCATTGGCAGCATCGGCCGTAACGCCGGCGGCGGCAGCCGCCCGTGCCG
CCACCTGTGCACCTACCGCGGCCACAGAGACTCTGTAACGAGCGTGGCGT
GGAACAGCCAGTCGACGCTCTTCGCGTCCGGCAGCGCCGACCGGACCGTC
GTCGTCTGGCGGCCGTCCAGCACGGAACCACTTCATGTCTTGCGTGGCGG
TCACCAGCTCGAGATAGGCTGCGTCTGCTTCTGCCACCATTCGACCGCCA
GTGCCGGCTGCCTCGTGTCCTGCGGCCGCGACCGCTACATGTGCTTTTTC
GACGTTACGTCCACCAAGGCCAAGCTACGGGAGCAGATCCCAACGGGGAG
CGACCGGCGGACGACATGCGTTTCGTTCCACACGACGGAGACGGCGCTGG
TAACGGCGAGCGCCGGCAAGGAGGCGTCGCTGCTTCTGTGGCGGCCGTGC
TCGTCGTGGCTCGTGTGGTGGCGGCGCCTCATCGCGCTGTGGCGGGGCAT
CTGGTTCGACTGA
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