mRNA_P-wetherbeei_contig1491.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1491.1.1
Unique NamemRNA_P-wetherbeei_contig1491.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1491.1.1 vs. uniprot
Match: D7FI06_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI06_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 8.070e-23
Identity = 75/187 (40.11%), Postives = 105/187 (56.15%), Query Frame = 3 
Query:  564 LLKAAVALLCGTVEAEFEMAAEALVKGRVRGAQRYVTELESYRHTLVADVALSRPAKGDSEELQNVFGV----------AGAEALLVSCQAALGRRPGKLFVTHSSLWFHSKLLG-QHKYILPLSTVLSAEVMASPLRLSSSVVIKT---AYLEEVLFIFPATSPSSVEPLALLIRRLLALQQQERA 1082
            L++AAV  L   V    E   EA +K R+ GAQ Y  ELE Y  T+    AL   A     +  +   V          A  E  L S  AALG++PG+L+VT+S+LWFHSK+LG + +++LPL+ V+S  ++ + L LSSS+VI T       E++FIFP      VEPL +L+R+L  L  +ERA
Sbjct:  538 LVRAAVKALTEVVGRVCESREEAFLKARLPGAQAYTVELERYGSTIAGGSALRATASSPERDWASAGSVEVDDDLWRLFAAQETRLYSSSAALGKKPGRLYVTYSTLWFHSKVLGFESRHVLPLAEVVSITLLGTALDLSSSLVIATNSGGVPGELMFIFPGQKRRQVEPLEVLLRQLAVLAAKERA 724
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1491.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI06_ECTSI8.070e-2340.11GRAM domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1491contigP-wetherbeei_contig1491:5145..6540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1082
Hectar predicted targeting categoryother localisation
Exons3
Cds size660
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.368277-UTR-P-wetherbeei_contig1491:5144..53571683186037.368277-UTR-P-wetherbeei_contig1491:5144..5357Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1491 5145..5357 -
1683186037.37711-UTR-P-wetherbeei_contig1491:5613..56871683186037.37711-UTR-P-wetherbeei_contig1491:5613..5687Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1491 5614..5687 -
1683186037.402119-UTR-P-wetherbeei_contig1491:6405..65401683186037.402119-UTR-P-wetherbeei_contig1491:6405..6540Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1491 6406..6540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.3860765-CDS-P-wetherbeei_contig1491:5687..60861683186037.3860765-CDS-P-wetherbeei_contig1491:5687..6086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1491 5688..6086 -
1683186037.3939168-CDS-P-wetherbeei_contig1491:6144..64051683186037.3939168-CDS-P-wetherbeei_contig1491:6144..6405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1491 6145..6405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1491.1.1prot_P-wetherbeei_contig1491.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1491 5688..6405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1491.1.1

>prot_P-wetherbeei_contig1491.1.1 ID=prot_P-wetherbeei_contig1491.1.1|Name=mRNA_P-wetherbeei_contig1491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=220bp
MSELEAENAILKKLLEPKYRQLGLALASQPKYASGGGGGGGGAGAGGSNS
SNGSGSSASNSDGGLGCGEAGSMALRANPLFRYSDSSATAARAAVAAPVA
AAAAAATAVVPALMTAALAAAAPAAAKPAAAAKWAVLRRRRAPCSRRRSR
CCAALSKPSSRWLPRRSSRGASAARSVTSPSWKATGTRWWRTWRCRGRQR
ATRRSCRTCLGWRGPRHCW*
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mRNA from alignment at P-wetherbeei_contig1491:5145..6540-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1491.1.1 ID=mRNA_P-wetherbeei_contig1491.1.1|Name=mRNA_P-wetherbeei_contig1491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1396bp|location=Sequence derived from alignment at P-wetherbeei_contig1491:5145..6540- (Phaeothamnion wetherbeei SAG_119_79)
GCCGACGCCGTTCCGGTCGCTTGTGGGACCCACGAGGTGGAATTGGACCT
CCATTTTGTGGATTGCGTCTGCGCGCGGGCGCGCGGCTTGTCGCTGCTGG
ACGCCCACGAGACATGGAAGCCGCTGAAGCGCGCCATGAGCGAGCTCGAG
GCGGAAAACGCTATTCTGAAGAAGCTTCTTGAGCCCAAATACCGCCAGCT
CGGGCTCGCGCTGGCGTCACAGCCGAAGTACGCAAGCGGCGGCGGCGGCG
GCGGCGGCGGCGCTGGTGCTGGTGGAAGCAACAGCAGCAATGGTAGCGGC
AGCAGTGCGAGCAACAGCGACGGTGGACTTGGCTGCGGCGAGGCCGGATC
CATGGCCCTTCGAGCCAACCCGTTATTTCGATACAGCGACAGCAGCGTGA
CCGCATGCGTGCGCCCGCGCTGCCGTCACTTGGCAACGCCCACCAATGTC
TCAGGCAACAGCGGCGCGGGCGGCGGTGGCAGCTCCGGTGGCGGCTGCGG
CAGCGGCGGCGACTGCGGTGGTGCCAGCTTTGATGACAGCAGCTTTGGCG
GCAGCAGCACCGGCGGCGGCGAAGCCAGCAGCGGCGGCAAAATGGGCGGT
GCTTCGCCGTCGGCGGGCGCCTTGCTCAAGGCGGCGGTCGCGCTGCTGTG
CGGCACTGTCGAAGCCGAGTTCGAGATGGCTGCCGAGGCGCTCGTCAAGG
GGCGCGTCCGCGGCGCGCAGCGTTACGTCACCGAGCTGGAAAGCTACCGG
CACACGCTGGTGGCGGACGTGGCGCTGTCGCGGCCGGCAAAGGGCGACTC
GGAGGAGCTGCAGAACGTGTTTGGGGTGGCGGGGGCCGAGGCACTGCTGG
TGAGCTGTCAGGCGGCGCTCGGGCGTCGGCCCGGCAAGCTCTTCGTCACG
CACTCCAGCCTCTGGTTCCATTCCAAGGTGCGTTTGCCGTGGCCATGATG
GCGGAGTGTTGGTGAATTTTACGTCGGGCACCATTTTGGATGGCGGTGTT
CTGCTTGTTGGTTTCGAGACTGGGCGCTCTCGGCGTGGTTTAATTTGAAT
TGCCTACCGTCTATTTTTCTGCTTTCTGCTTGCATCCCTCTCTCCCTGAG
TGTGGTTTCTGCCAATTACCTGTTCTTGTCCTCTGCTCACGTATTTTCGT
TTGGTTTATGCGTTCGTACGTCACTTCACGCAGCTGCTGGGACAGCACAA
GTACATCCTGCCGCTGTCGACGGTCCTCTCCGCCGAGGTCATGGCATCGC
CGCTGCGGCTCTCCTCCTCGGTGGTCATCAAGACAGCCTACTTAGAAGAG
GTTTTGTTCATTTTTCCGGCGACCTCGCCGTCTTCCGTCGAGCCGCTGGC
GCTGCTGATTCGGCGGCTGCTGGCGCTGCAGCAGCAGGAGAGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1491:5145..6540-

>mRNA_P-wetherbeei_contig1491.1.1 ID=mRNA_P-wetherbeei_contig1491.1.1|Name=mRNA_P-wetherbeei_contig1491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig1491:5145..6540- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAGCTCGAGGCGGAAAACGCTATTCTGAAGAAGCTTCTTGAGCC
CAAATACCGCCAGCTCGGGCTCGCGCTGGCGTCACAGCCGAAGTACGCAA
GCGGCGGCGGCGGCGGCGGCGGCGGCGCTGGTGCTGGTGGAAGCAACAGC
AGCAATGGTAGCGGCAGCAGTGCGAGCAACAGCGACGGTGGACTTGGCTG
CGGCGAGGCCGGATCCATGGCCCTTCGAGCCAACCCGTTATTTCGATACA
GCGACAGCAGCGCAACAGCGGCGCGGGCGGCGGTGGCAGCTCCGGTGGCG
GCTGCGGCAGCGGCGGCGACTGCGGTGGTGCCAGCTTTGATGACAGCAGC
TTTGGCGGCAGCAGCACCGGCGGCGGCGAAGCCAGCAGCGGCGGCAAAAT
GGGCGGTGCTTCGCCGTCGGCGGGCGCCTTGCTCAAGGCGGCGGTCGCGC
TGCTGTGCGGCACTGTCGAAGCCGAGTTCGAGATGGCTGCCGAGGCGCTC
GTCAAGGGGCGCGTCCGCGGCGCGCAGCGTTACGTCACCGAGCTGGAAAG
CTACCGGCACACGCTGGTGGCGGACGTGGCGCTGTCGCGGCCGGCAAAGG
GCGACTCGGAGGAGCTGCAGAACGTGTTTGGGGTGGCGGGGGCCGAGGCA
CTGCTGGTGA
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