mRNA_P-wetherbeei_contig1490.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1490.5.1
Unique NamemRNA_P-wetherbeei_contig1490.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1490.5.1 vs. uniprot
Match: A0A835ZIZ6_9STRA (Glutamate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIZ6_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.150e-41
Identity = 91/157 (57.96%), Postives = 107/157 (68.15%), Query Frame = 1 
Query:  157 LEKMARQSLLLELTQKQQRTYEAVVDWFLSQMPATYFRQTTEEARLEHLQAITAMIEPRVFEATAAAAAAGRFEATAAGGRTALPPTRDLVLHFEHVTEGRRDVTFIQPG-----TRRRKDGLLALMGSLPPADGTLRQVKVFNSKDGTLAINVFGY 612
            + KMA QSLL ELTQKQQ+TYE+VVDWFL  MPATYFRQT++EARLEHLQAI+AM+EP  F          R +   A     +  TRD+VL  +  +   R+VT IQPG     TR R+  LLA++ SLPPADG L QVKVFNS D TLAINVF Y
Sbjct:    1 MRKMATQSLLHELTQKQQQTYESVVDWFLQNMPATYFRQTSQEARLEHLQAISAMMEPSFFV---------RAKNFKADSDAPVAATRDIVLKLQRASASGREVTVIQPGSAVAGTRERRHNLLAVLESLPPADGKLSQVKVFNSLDRTLAINVFAY 148
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BLAST of mRNA_P-wetherbeei_contig1490.5.1 vs. uniprot
Match: D8LF79_ECTSI (Glutamate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF79_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.300e-31
Identity = 81/177 (45.76%), Postives = 104/177 (58.76%), Query Frame = 1 
Query:  136 LPHNSRQLEKMARQSLLLELTQKQQRTYEAVVDWFLSQMPATYFRQTTEEARLEHLQAITAMIEPRVFEATAAAAAAGRFEATAAGGRTALPPTRDLVLHFEHVTEGRRDVTFIQPGTRRRKDGLLALMGSLPPADGTLRQVKVFNSKDGTLAINVFGYTDH----PAAVGAAAAGV 654
            +P N  +LEKMARQSLL EL Q+QQRT+E  VDWFL  MPA+YFRQTTEE+RL+HL AI++M+E             G  +A    G   L PT+D+ LHF+   E  +++TF+Q  T+ R DG+L L+ SLP AD               LA+ +FGY       P A G  AAGV
Sbjct:    1 MPRNELKLEKMARQSLLHELWQEQQRTHEGAVDWFLRNMPASYFRQTTEESRLQHLGAISSMLE------------GGHVDAN---GVERLTPTKDITLHFQRDVENMKEMTFVQ-STKGRSDGILRLLDSLPQADXXXXXXXXXXXXXXNLAVYLFGYMKQEEVPPDAAGGHAAGV 161
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BLAST of mRNA_P-wetherbeei_contig1490.5.1 vs. uniprot
Match: A0A6H5LPU5_9PHAE (Glutamate dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPU5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.520e-14
Identity = 54/139 (38.85%), Postives = 73/139 (52.52%), Query Frame = 1 
Query:  250 MPATYFRQTTEEARLEHLQAITAMIEPRVFEATAAAAAAGRFEATAAGGRTALPPTRDLVLHFEHVTEGRRDVTFIQPGTRRRKDGLLALMGSLPPADGTLRQVKVFNSKDGTLAINVFGYTDH----PAAVGAAAAGV 654
            MPA+YFRQTTEE+RL+HL AI++M+E             G  +A    G   L PT+D+ LHF+   E  +++TF+Q  T+ R DG+L L+ SLP                  LA+ +FGY       P A G  AAGV
Sbjct:    1 MPASYFRQTTEESRLQHLGAISSMLE------------GGHVDAN---GVERLTPTKDITLHFQRDVENMKEMTFVQ-STKGRSDGILRLLDSLPRXXXXXXXXXXXXXXXXNLAVYLFGYMKQDEAPPDAAGGHAAGV 123
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BLAST of mRNA_P-wetherbeei_contig1490.5.1 vs. uniprot
Match: A0A7S2YL56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YL56_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.250e-9
Identity = 43/142 (30.28%), Postives = 71/142 (50.00%), Query Frame = 1 
Query:  124 ASGWLPHNSRQLEKMARQSLLLELTQKQQRTYEAVVDWFLSQMPATYFRQTTEEARLEHLQAITAMIEPRVFEATAAAAAAGRFEATAAGGRTALPPTRDLVLHFE-HVTEGRRDVTFIQPGTRRRKDGLLALMGSLPPADG 546
            A  W   ++  ++ + +++L+ ELTQ+Q +T EAVV WFL  MP +YF Q  E  R++H++AI ++ +  +                            DL L+ + H+ +GR   TFI+PGT+     LL ++  L   DG
Sbjct:   67 AVSWQAAHNVDIQNVTQKALIYELTQQQTKTIEAVVPWFLENMPESYFLQIPEPFRMDHIKAIASLKDTNM----------------------------DLFLNLKSHMPDGREVFTFIRPGTQ--PGTLLHMLEDLRDNDG 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1490.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZIZ6_9STRA2.150e-4157.96Glutamate dehydrogenase n=1 Tax=Tribonema minus Ta... [more]
D8LF79_ECTSI1.300e-3145.76Glutamate dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LPU5_9PHAE3.520e-1438.85Glutamate dehydrogenase n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2YL56_9STRA2.250e-930.28Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1490contigP-wetherbeei_contig1490:5578..6829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LF79
PFAMsBac_GDH,ELFV_dehydrog
Model size660
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC02799
KEGG koko:K15371
KEGG ReactionR00243
KEGG Pathwayko00220,ko00250,ko00430,ko00910,ko01100,map00220,map00250,map00430,map00910,map01100
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.14e-32
EggNOG OGsCOG0334@1|root,KOG2250@2759|Eukaryota
EC1.4.1.2
Descriptionglutamate dehydrogenase [NAD(P) ] activity
Cds size657
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.1562405-CDS-P-wetherbeei_contig1490:5577..58281683186037.1562405-CDS-P-wetherbeei_contig1490:5577..5828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1490 5578..5828 +
1683186037.170211-CDS-P-wetherbeei_contig1490:5985..61751683186037.170211-CDS-P-wetherbeei_contig1490:5985..6175Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1490 5986..6175 +
1683186037.179967-CDS-P-wetherbeei_contig1490:6612..68281683186037.179967-CDS-P-wetherbeei_contig1490:6612..6828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1490 6613..6828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1490.5.1prot_P-wetherbeei_contig1490.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1490 5578..6828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1490.5.1

>prot_P-wetherbeei_contig1490.5.1 ID=prot_P-wetherbeei_contig1490.5.1|Name=mRNA_P-wetherbeei_contig1490.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=219bp
FNGLEDAPSPEAMSPGADASAAATSATAAAVAAAAATARASASGWLPHNS
RQLEKMARQSLLLELTQKQQRTYEAVVDWFLSQMPATYFRQTTEEARLEH
LQAITAMIEPRVFEATAAAAAAGRFEATAAGGRTALPPTRDLVLHFEHVT
EGRRDVTFIQPGTRRRKDGLLALMGSLPPADGTLRQVKVFNSKDGTLAIN
VFGYTDHPAAVGAAAAGVP
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mRNA from alignment at P-wetherbeei_contig1490:5578..6829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1490.5.1 ID=mRNA_P-wetherbeei_contig1490.5.1|Name=mRNA_P-wetherbeei_contig1490.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1252bp|location=Sequence derived from alignment at P-wetherbeei_contig1490:5578..6829+ (Phaeothamnion wetherbeei SAG_119_79)
TTTAACGGGCTGGAGGACGCGCCGTCCCCGGAAGCCATGTCGCCCGGGGC
AGATGCCTCAGCCGCAGCAACTTCAGCAACGGCGGCCGCCGTCGCCGCCG
CCGCTGCAACCGCGCGCGCGTCCGCCTCCGGCTGGTTGCCGCACAACTCC
CGGCAGCTGGAGAAGATGGCGCGGCAGTCGCTGCTGCTCGAGTTGACGCA
GAAGCAGCAGCGTACCTACGAAGCTGTCGTCGACTGGTTCCTCTCGCAAA
TGTGAGTGAAGGAGCAGAAACCGGCTGTTGTGAAAGAAAACGGGAAAGCA
AGGCGCCTGTCGGAATCCTGGCACACATCCTGAAAACTTCTGATGGAAAA
CGCGCGGAAAGCCTCCAAGCGTGAACGTTTTCCTTGGGCTTGTTTCGATC
ATCGGCAGGCCGGCGACATACTTCCGGCAGACGACGGAGGAAGCGCGCCT
GGAGCACCTGCAGGCGATTACCGCCATGATCGAGCCGCGCGTCTTCGAGG
CGACGGCGGCGGCGGCGGCCGCCGGCAGGTTTGAGGCGACGGCGGCGGGC
GGTCGCACTGCGCTGCCTCCCACGCGGGATTTGGTGCTGCACTTTGAGGC
GAGTACTTTTGGACAGTGGAGGGGAAGGGAGCAAATATCCGTACTTTTGT
GATGTTCCGCTGCGTGTATCAATGCCTTTCTGACATCCTGACTGTTGAAG
TCATATCGCGGTTCATTTTTGAATAGGTCCACTTCTGGTTGGTGGTAGGT
TTTCTCTTCTGTCAGGACGGAAACTGGCCCGTCGGGACGCCGCTGCAAGC
GTACTTGAACCGGCATTATTGCAATTTTTGTCATCGCTTGCAGTACCCAA
GCCGTTAGACTCTCAGATTTTTCAGTTCACCGACTTTTCCCGCTCACGGC
ATCTTTTCCGCTGCCTCCTCCTTACTTGCGTTGCGTACCGCTGCCGCCCA
TTTGCCTACCTTCCTGCCGCTTCCCGCTTCCTCTTGTAACCCCCTTCTGC
TGACGCTCCCCCCTTGCTTTCCCTCGAACGAACAGCACGTGACGGAGGGC
CGCCGTGACGTGACCTTCATCCAGCCGGGCACGCGGCGCCGCAAGGATGG
CCTGCTGGCCCTCATGGGCTCGCTACCCCCTGCCGACGGCACCCTCCGCC
AGGTCAAAGTCTTCAACAGCAAGGACGGCACTCTCGCCATCAACGTCTTC
GGCTATACCGACCACCCGGCCGCCGTTGGCGCTGCCGCCGCGGGAGTGCC
TT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1490:5578..6829+

>mRNA_P-wetherbeei_contig1490.5.1 ID=mRNA_P-wetherbeei_contig1490.5.1|Name=mRNA_P-wetherbeei_contig1490.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=657bp|location=Sequence derived from alignment at P-wetherbeei_contig1490:5578..6829+ (Phaeothamnion wetherbeei SAG_119_79)
TTTAACGGGCTGGAGGACGCGCCGTCCCCGGAAGCCATGTCGCCCGGGGC
AGATGCCTCAGCCGCAGCAACTTCAGCAACGGCGGCCGCCGTCGCCGCCG
CCGCTGCAACCGCGCGCGCGTCCGCCTCCGGCTGGTTGCCGCACAACTCC
CGGCAGCTGGAGAAGATGGCGCGGCAGTCGCTGCTGCTCGAGTTGACGCA
GAAGCAGCAGCGTACCTACGAAGCTGTCGTCGACTGGTTCCTCTCGCAAA
TGCCGGCGACATACTTCCGGCAGACGACGGAGGAAGCGCGCCTGGAGCAC
CTGCAGGCGATTACCGCCATGATCGAGCCGCGCGTCTTCGAGGCGACGGC
GGCGGCGGCGGCCGCCGGCAGGTTTGAGGCGACGGCGGCGGGCGGTCGCA
CTGCGCTGCCTCCCACGCGGGATTTGGTGCTGCACTTTGAGCACGTGACG
GAGGGCCGCCGTGACGTGACCTTCATCCAGCCGGGCACGCGGCGCCGCAA
GGATGGCCTGCTGGCCCTCATGGGCTCGCTACCCCCTGCCGACGGCACCC
TCCGCCAGGTCAAAGTCTTCAACAGCAAGGACGGCACTCTCGCCATCAAC
GTCTTCGGCTATACCGACCACCCGGCCGCCGTTGGCGCTGCCGCCGCGGG
AGTGCCT
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