mRNA_P-wetherbeei_contig1489.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1489.2.1
Unique NamemRNA_P-wetherbeei_contig1489.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1489.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1489contigP-wetherbeei_contig1489:3055..4350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size757
Hectar predicted targeting categoryother localisation
Exons3
Cds size753
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.8219397-CDS-P-wetherbeei_contig1489:3056..33951683186036.8219397-CDS-P-wetherbeei_contig1489:3056..3395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1489 3057..3395 -
1683186036.8305588-CDS-P-wetherbeei_contig1489:3742..39741683186036.8305588-CDS-P-wetherbeei_contig1489:3742..3974Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1489 3743..3974 -
1683186036.8385959-CDS-P-wetherbeei_contig1489:4168..43501683186036.8385959-CDS-P-wetherbeei_contig1489:4168..4350Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1489 4169..4350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1489.2.1prot_P-wetherbeei_contig1489.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1489 3057..4350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1489.2.1

>prot_P-wetherbeei_contig1489.2.1 ID=prot_P-wetherbeei_contig1489.2.1|Name=mRNA_P-wetherbeei_contig1489.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
RRSSGVQEKDSLGSVSSSVQHIRLALSSRPTPCGQSLSLDGKRLSFKLER
IFANLESFLLRNRIQARVGDGSGQTSVAVKIVSMHADSTCRAAKAAAMTL
ACNAVCFAATENRKRQWPGADSERGGKGRSALAAAHRKCARLPSLRRRRR
VLLPFPWRQPLLPRHVERNRDRFGRGLLSATGSGGRCVASDYAVVLCGTG
IAKAADDRGGAGSNNGGSCGNGSSSTSQNRAGGSRDRKGRAGGGAGADCG
G
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mRNA from alignment at P-wetherbeei_contig1489:3055..4350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1489.2.1 ID=mRNA_P-wetherbeei_contig1489.2.1|Name=mRNA_P-wetherbeei_contig1489.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1296bp|location=Sequence derived from alignment at P-wetherbeei_contig1489:3055..4350- (Phaeothamnion wetherbeei SAG_119_79)
CGGAGGTCGTCCGGAGTGCAAGAAAAGGATAGCCTGGGCAGCGTAAGCTC
TTCGGTTCAGCATATACGCCTCGCCTTATCATCTAGGCCAACGCCTTGCG
GGCAAAGCCTTTCTCTTGATGGAAAAAGGCTTTCCTTCAAGCTTGAACGC
ATTTTCGCTAACCTCGAGAGCTTCCTCCTCAGGTAAATGGCTCTCCACTC
AGTTTGGTTTCACGTTGCATAGAGATTTCGGGGATTTCACTAGCGATTTC
GGGCCTACGGGTACAGCTAAGTTAAATTTCGTGTTCATCCTCAGGTATGC
CCTTCATCCTGAACCAAAAACCATCGATGGACGACCGCGTTGACAGAACA
AAGCGCCTCTCCACTTTTATTACCAGGAATCGGATCCAAGCCAGGGTCGG
CGACGGGTCTGGCCAAACATCTGTGGCCGTGAAAATCGTTTCCATGCACG
CCGACAGCACCTGCCGCGCAGCAAAGGCAGCAGCGATGACTTTGGCGTGC
AACGCCGTTTGCTTTGCGGCAACGGAGAACCGCAAAAGGCAGTGGCCGGG
CGCCGACTCAGAGAGGGGAGGAAAGGGGCGCAGTGCGTTGGCCGCCGCGC
ACCGCAAAGTGAGGAATCGGTCTATCCGGGGCCAAGGGTCCTTTGTCGTG
CTGTTGAACGATTCAAGTCTGAGTACGAAGCGCTCATGATGCGGTTTCGC
TCGAATGCAACTTCTGCTTTGTCGTTATATTGTATGCCCCTTTGCAATTG
ATTCGTGTGTTTCGAGCTGAATATCTTCATCTGATGTTGTCGAATTATCT
ACAGCCATAGCCTGTCTTGCGCTCGTTCCCGCGCAGAGTCTTCTCTCTGC
GGACATTTTATCGAGCAAACTTTACGTCGCAAGACTCCCGTTTGTAAGCG
CCTCACGCTGATGCCCGCGCTCCCCGCCTTTCGCGGCACTCTATCTGCGA
TGTAGTGTGCAAGGCTGCCGTCGCTGCGGCGGAGGCGCCGAGTGCTGCTG
CCTTTCCCCTGGCGGCAGCCCCTCCTGCCAAGACACGTCGAGAGGAATAG
GGATCGCTTCGGCAGGGGACTGCTGTCGGCGACCGGCTCCGGCGGCCGCT
GCGTCGCTTCTGATTACGCGGTTGTGCTCTGCGGAACTGGCATCGCCAAG
GCTGCCGATGACCGTGGCGGGGCGGGCAGCAACAATGGAGGGAGCTGCGG
TAATGGCAGCAGCAGCACCAGCCAGAACAGGGCAGGGGGCAGCCGGGACC
GAAAGGGCCGCGCAGGAGGAGGAGCAGGAGCCGACTGCGGCGGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1489:3055..4350-

>mRNA_P-wetherbeei_contig1489.2.1 ID=mRNA_P-wetherbeei_contig1489.2.1|Name=mRNA_P-wetherbeei_contig1489.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig1489:3055..4350- (Phaeothamnion wetherbeei SAG_119_79)
CGGAGGTCGTCCGGAGTGCAAGAAAAGGATAGCCTGGGCAGCGTAAGCTC
TTCGGTTCAGCATATACGCCTCGCCTTATCATCTAGGCCAACGCCTTGCG
GGCAAAGCCTTTCTCTTGATGGAAAAAGGCTTTCCTTCAAGCTTGAACGC
ATTTTCGCTAACCTCGAGAGCTTCCTCCTCAGGAATCGGATCCAAGCCAG
GGTCGGCGACGGGTCTGGCCAAACATCTGTGGCCGTGAAAATCGTTTCCA
TGCACGCCGACAGCACCTGCCGCGCAGCAAAGGCAGCAGCGATGACTTTG
GCGTGCAACGCCGTTTGCTTTGCGGCAACGGAGAACCGCAAAAGGCAGTG
GCCGGGCGCCGACTCAGAGAGGGGAGGAAAGGGGCGCAGTGCGTTGGCCG
CCGCGCACCGCAAATGTGCAAGGCTGCCGTCGCTGCGGCGGAGGCGCCGA
GTGCTGCTGCCTTTCCCCTGGCGGCAGCCCCTCCTGCCAAGACACGTCGA
GAGGAATAGGGATCGCTTCGGCAGGGGACTGCTGTCGGCGACCGGCTCCG
GCGGCCGCTGCGTCGCTTCTGATTACGCGGTTGTGCTCTGCGGAACTGGC
ATCGCCAAGGCTGCCGATGACCGTGGCGGGGCGGGCAGCAACAATGGAGG
GAGCTGCGGTAATGGCAGCAGCAGCACCAGCCAGAACAGGGCAGGGGGCA
GCCGGGACCGAAAGGGCCGCGCAGGAGGAGGAGCAGGAGCCGACTGCGGC
GGG
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