mRNA_P-wetherbeei_contig1488.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1488.7.1
Unique NamemRNA_P-wetherbeei_contig1488.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: A0A3C1FQJ5_9PROT (Uncharacterized protein n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C1FQJ5_9PROT)

HSP 1 Score: 94.7 bits (234), Expect = 8.380e-23
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 MLPPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVLLIQIATGVILDIMEGVAS 234
            +LPPGLA+ D L     RQ QRNG LPPGL+KR LPD+L RALP R+ D +RVIVGNDV+LI+  T +ILDI+E V  
Sbjct:   90 LLPPGLAKRDTLXXXXARQLQRNGKLPPGLEKRGLPDELKRALPARQSDLERVIVGNDVVLIRRGTELILDILEDVVG 167          
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: A0A1G0FU97_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0FU97_9GAMM)

HSP 1 Score: 93.2 bits (230), Expect = 2.970e-22
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    4 LPPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVLLIQIATGVILDIMEGVASGR 240
            LPPGLA+ ++LPPGLERQ QRNGTLPPGL  R+LP DL + LP     ++R IV N V+L++ ATG I DI+E V +G 
Sbjct:   87 LPPGLAKKEKLPPGLERQLQRNGTLPPGLAXRELPPDLEQQLPEPAEGFERTIVENTVVLVEKATGRIADIIEDVIAGE 165          
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: A0A1E5Q8G8_9PROT (Uncharacterized protein n=1 Tax=Magnetovibrio blakemorei TaxID=28181 RepID=A0A1E5Q8G8_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 1.790e-20
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    4 LPPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVLLIQIATGVILDIMEGVASGR 240
            LPPGLA+   LPPGL++QY +NG L     KR LPDDL   LPRR  + D V VGNDV+LI  ATGVILD + GV +GR
Sbjct:  102 LPPGLAKRSSLPPGLQKQYDKNGRLXXXXXKRDLPDDLRSKLPRRVENQDVVEVGNDVVLIDRATGVILDTILGVLNGR 180          
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: A0A848WA85_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WA85_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 9.130e-20
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    7 PPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVLLIQIATGVILDIMEGVASGR 240
            PPGLA+ D LPPGL+RQ QRNG LPPGL+K+  P  L   LP      +RVI+GND +LI  AT V+LD++  V   R
Sbjct:   80 PPGLAKRDSLPPGLQRQLQRNGRLPPGLEKKAFPAHLTGQLPSPLRGTERVIIGNDAVLIDTATNVVLDVVRDVMGNR 157          
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: A0A651FYI3_9PROT (Uncharacterized protein n=1 Tax=Micavibrio sp. TaxID=2024841 RepID=A0A651FYI3_9PROT)

HSP 1 Score: 85.9 bits (211), Expect = 2.380e-19
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    7 PPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVLLIQIATGVILDIMEGVAS 234
            PPGLA+ D LPPGL  Q +RNG LPPGL+K+ L  DL R LP R G   R++ G+DVLL+  AT +I+DI++GVA 
Sbjct:   94 PPGLAKRDSLPPGLAMQLERNGRLPPGLEKQGLSADLERRLPLREG-LKRILAGDDVLLVDTATDIIVDILKGVAQ 168          
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: A0A557SH50_9GAMM (Uncharacterized protein n=1 Tax=Sedimenticola selenatireducens TaxID=191960 RepID=A0A557SH50_9GAMM)

HSP 1 Score: 81.3 bits (199), Expect = 9.230e-18
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    4 LPPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVLLIQIATGVILDIMEGV 228
            +PPGLA+ +        Q +RNG LPPGL+KR LPD L + LP RR    RV+V NDVLLI+ ATG+ILDI++ V
Sbjct:   73 MPPGLAKREXXXXXXXXQLERNGRLPPGLEKRDLPDGLDKLLPPRRHGQQRVVVDNDVLLIETATGLILDILKDV 147          
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: A0A357FZN3_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A357FZN3_9PROT)

HSP 1 Score: 79.3 bits (194), Expect = 9.300e-18
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    4 LPPGLA-RGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVLLIQIATGVILDIME 222
            LP GL+ R  +LPPGL++  ++NGTLPPGL KR+LPDDL R L        R IV NDV+LI+ ATGVILDI+E
Sbjct:    3 LPHGLSKRCGDLPPGLQKHLEKNGTLPPGLAKRELPDDLYRRLGPPPKGTGRYIVDNDVVLIEEATGVILDIIE 76          
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: A0A1G0JW19_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15 TaxID=1798298 RepID=A0A1G0JW19_9GAMM)

HSP 1 Score: 79.3 bits (194), Expect = 7.770e-17
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    4 LPPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVL-LIQIATGVILDIMEGVASGR 240
            LP GLA+ + LPPGLERQ Q+NG LPPGL KR LP DL R LP  +  Y+R I+ + V+ L+  ATG I DI+     GR
Sbjct:   85 LPTGLAKRERLPPGLERQLQKNGALPPGLAKRGLPADLERQLPPVKEGYERQIIEDSVIILVDQATGRIADIITDAIVGR 164          
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: UPI0004722C57 (hypothetical protein n=1 Tax=Sneathiella glossodoripedis TaxID=418853 RepID=UPI0004722C57)

HSP 1 Score: 79.0 bits (193), Expect = 8.930e-17
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    4 LPPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVLLIQIATGVILDIMEGVAS 234
            LPPGLA+ +        Q Q  G+LPP L KRQLPD L + LP+R   ++RVIVGND+LLI+  T +ILDI+ GVA+
Sbjct:   79 LPPGLAKKNXXXXXXXXQLQIKGSLPPRLAKRQLPDKLHQRLPKRSPIFERVIVGNDILLIEKGTEIILDILRGVAN 155          
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Match: A0A7C1D104_9GAMM (Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. TaxID=2093813 RepID=A0A7C1D104_9GAMM)

HSP 1 Score: 79.0 bits (193), Expect = 1.120e-16
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    4 LPPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDYDRVIVGNDVLLIQIATGVILDIMEGV 228
            LPPGLAR + LPPGLERQ    GTLPPGL+ R+LP DL R L R    Y R++VG  V+LI   T ++ DI+  V
Sbjct:   89 LPPGLARRERLPPGLERQLYSRGTLPPGLEYRRLPYDLDRQLSRLPDGYGRMVVGAHVVLIDENTRIVFDIIRNV 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1488.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1FQJ5_9PROT8.380e-2361.54Uncharacterized protein n=5 Tax=Alphaproteobacteri... [more]
A0A1G0FU97_9GAMM2.970e-2258.23Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1E5Q8G8_9PROT1.790e-2059.49Uncharacterized protein n=1 Tax=Magnetovibrio blak... [more]
A0A848WA85_9PROT9.130e-2053.85Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A651FYI3_9PROT2.380e-1956.58Uncharacterized protein n=1 Tax=Micavibrio sp. Tax... [more]
A0A557SH50_9GAMM9.230e-1854.67Uncharacterized protein n=1 Tax=Sedimenticola sele... [more]
A0A357FZN3_9PROT9.300e-1859.46Uncharacterized protein (Fragment) n=1 Tax=Rhodosp... [more]
A0A1G0JW19_9GAMM7.770e-1753.75Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
UPI0004722C578.930e-1753.25hypothetical protein n=1 Tax=Sneathiella glossodor... [more]
A0A7C1D104_9GAMM1.120e-1654.67Uncharacterized protein n=1 Tax=Thioalkalivibrio s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1488contigP-wetherbeei_contig1488:5502..5744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1238182.C882_2113
Model size243
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.26e-19
EggNOG OGsCOG5455@1|root,COG5455@2|Bacteria,1N3PU@1224|Proteobacteria,2UGK9@28211|Alphaproteobacteria,2JUR7@204441|Rhodospirillales
Descriptionresponse to cobalt ion
Cds size243
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.4840653-CDS-P-wetherbeei_contig1488:5501..57441683186036.4840653-CDS-P-wetherbeei_contig1488:5501..5744Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1488 5502..5744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1488.7.1prot_P-wetherbeei_contig1488.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1488 5502..5744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1488.7.1

>prot_P-wetherbeei_contig1488.7.1 ID=prot_P-wetherbeei_contig1488.7.1|Name=mRNA_P-wetherbeei_contig1488.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MLPPGLARGDELPPGLERQYQRNGTLPPGLQKRQLPDDLARALPRRRGDY
DRVIVGNDVLLIQIATGVILDIMEGVASGR*
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mRNA from alignment at P-wetherbeei_contig1488:5502..5744-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1488.7.1 ID=mRNA_P-wetherbeei_contig1488.7.1|Name=mRNA_P-wetherbeei_contig1488.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig1488:5502..5744- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCCGCCGGGCCTTGCCAGGGGCGACGAATTGCCGCCGGGCCTGGA ACGGCAATATCAGCGCAACGGGACGCTTCCGCCCGGGCTGCAAAAACGTC AGTTACCGGATGATCTGGCCCGCGCCCTGCCCCGGCGCCGTGGCGATTAT GACAGGGTGATTGTCGGCAATGATGTCTTACTCATACAGATCGCCACCGG CGTTATTCTGGATATAATGGAAGGCGTCGCAAGCGGGAGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1488:5502..5744-

>mRNA_P-wetherbeei_contig1488.7.1 ID=mRNA_P-wetherbeei_contig1488.7.1|Name=mRNA_P-wetherbeei_contig1488.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig1488:5502..5744- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCCGCCGGGCCTTGCCAGGGGCGACGAATTGCCGCCGGGCCTGGA
ACGGCAATATCAGCGCAACGGGACGCTTCCGCCCGGGCTGCAAAAACGTC
AGTTACCGGATGATCTGGCCCGCGCCCTGCCCCGGCGCCGTGGCGATTAT
GACAGGGTGATTGTCGGCAATGATGTCTTACTCATACAGATCGCCACCGG
CGTTATTCTGGATATAATGGAAGGCGTCGCAAGCGGGAGATAG
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