mRNA_P-wetherbeei_contig1485.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA) HSP 1 Score: 174 bits (440), Expect = 3.130e-45 Identity = 83/145 (57.24%), Postives = 111/145 (76.55%), Query Frame = 3
Query: 450 ILIGTPGRIAELALEKRRIKLGGAAFVVLDEVDALLRPPHSDELDAIFGALPPADFRQTVFASATGQSPAVRAAAAKYMRAQHEFISGGVDAAAAQTRAQALPANLRHVILTAPKVKKFDTLRRFMHTQPFPECVMMFVNDPQQV 884
+LIGTPGR+ ELALEK+R+KL FVVLDEVD L+RPP+ +E+D I G + +++RQTV+ASATG+SP V AAAK+M+ + ++ G +A A LP N++H I+T+PKV+KF++LRR MHTQPFPE VM+FVNDP QV
Sbjct: 662 VLIGTPGRVCELALEKKRVKLANVKFVVLDEVDTLMRPPYDEEIDQIIGTMRSSEYRQTVYASATGRSPTVERAAAKHMKEGYTYVVGNDNAGA-----DGLPPNIKHTIITSPKVRKFESLRRLMHTQPFPESVMVFVNDPHQV 801
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.200e-41 Identity = 86/145 (59.31%), Postives = 105/145 (72.41%), Query Frame = 3
Query: 450 ILIGTPGRIAELALEKRRIKLGGAAFVVLDEVDALLRPPHSDELDAIFGALPPADFRQTVFASATGQSPAVRAAAAKYMRAQHEFISGGVDAAAAQTRAQALPANLRHVILTAPKVKKFDTLRRFMHTQPFPECVMMFVNDPQQV 884
I+I TPGR+ EL ++RR+KLG VVLDEVDALLRPP+ E+DAI A P RQ VFASATG+SP V AA+ +YMR + F+ GG + R LP+N+RH I+T PKVKKFDTLRR ++TQPFPE VM+FVNDP QV
Sbjct: 958 IVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPRGR-RQAVFASATGRSPVVSAASERYMREEPLFVGGGDLGVGSGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPESVMIFVNDPIQV 1101
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A4D9D1Y7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y7_9STRA) HSP 1 Score: 119 bits (298), Expect = 8.570e-27 Identity = 70/164 (42.68%), Postives = 96/164 (58.54%), Query Frame = 3
Query: 450 ILIGTPGRIAELALEKRRIKLGGAAFVVLDEVDALLRPPHSDELDAIFGALPPADFRQTVFASATGQSPAVRAAAAKYMRAQHEFISGGV-------------------DAAAAQTRAQALPANLRHVILTAPKVKKFDTLRRFMHTQPFPECVMMFVNDPQQV 884
+L+GTPGR+AE+ LEKR+ ++G A +VLDEVD LL + +L + A+ RQ VFASATG SP V A A+ M+ ++ IS D A++ + LPA+LRH IL P VK D LRRF++T+P PECV++FVND +V
Sbjct: 185 VLVGTPGRVAEMVLEKRKARIGRAEMLVLDEVDMLLDDSYHGDLRMLVQAM--GSLRQAVFASATGASPGVEALASNVMQGPYQIISSSSSPSSPSSTPLLDPQEEDAGDQASSLPPSIELPASLRHGILITPPVKAVDNLRRFLNTEPKPECVLVFVNDALKV 346
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A7S2XV29_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV29_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.370e-25 Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 1
Query: 1 SVLTIGSIEPLPSYAGRSFAELGLATAEADHPLAALARNVEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKPQ 441
+VL++ S+ + AG SF E G+ + A + N+ MGI PT VQA +L+++L D V+HA TGSGKTLA+LLP + ++DP VQ++VV P REL AQ+ +V +L+ GTG+ + GGAN+ RQIE LKK +PQ
Sbjct: 129 NVLSLESLGEISVAAG-SFEEAGMTPQNSP---AGMLGNLREMGILQPTSVQAAALQSLLVEGRDGVLHAPTGSGKTLAYLLPAVCKVDPDRDVVQVVVVVPSRELGAQVANVLNQLLPGTGITPLSLIGGANINRQIENLKKKRPQ 271
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: UPI0009950723 (DEAD/DEAH box helicase n=1 Tax=Alkalihalobacillus patagoniensis TaxID=228576 RepID=UPI0009950723) HSP 1 Score: 103 bits (256), Expect = 1.470e-21 Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 103 ALARNVEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKPQ 441
ALA N+ A GI++PTP+Q ++ L N + ++ + TGSGKTLA++LP+L +++ A Q L++AP +ELA QIE V E TGL GGAN+ RQ+EKLKK KPQ
Sbjct: 13 ALAGNLAAQGITSPTPIQEAAIPEAL-NGKNLILRSQTGSGKTLAYVLPILAKIELEKQATQALIIAPSQELAVQIETVIKETSEQTGLSCMVFIGGANINRQVEKLKKKKPQ 124
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: E0I6B9_9BACL (DEAD/DEAH box helicase domain protein n=1 Tax=Paenibacillus curdlanolyticus YK9 TaxID=717606 RepID=E0I6B9_9BACL) HSP 1 Score: 103 bits (258), Expect = 2.160e-21 Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 106 LARNVEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKPQ 441
LA +EA GI PT VQ+E++ A+L +D + TGSGKTLAFLLP+L QLD +SSAVQ +V+AP +ELA QI V E G+R + GGA + RQ+E LKK KPQ
Sbjct: 14 LADALEAAGIKEPTAVQSEAIAALLAG-ADVTARSQTGSGKTLAFLLPMLEQLDSASSAVQAVVLAPTQELAMQITRVAQAYGEAVGIRVVSLIGGAAMSRQVENLKKHKPQ 124
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: R1DX56_EMIHU (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DX56_EMIHU) HSP 1 Score: 95.9 bits (237), Expect = 2.230e-21 Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 1
Query: 142 PTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKP 438
P +QA S + G R DAV+ AHTGSGKTLA LLPV+ QLD + Q L++ P RELA Q+ V L++GTGL + + GGANV RQ+E+L+K +P
Sbjct: 1 PNALQAASYSVLAGGR-DAVIDAHTGSGKTLALLLPVVSQLDAAVREPQALILCPSRELAHQVARVAASLLQGTGLSACALVGGANVNRQLERLRKAQP 98
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A074MG61_9BACL (Uncharacterized protein n=2 Tax=Tumebacillus TaxID=432330 RepID=A0A074MG61_9BACL) HSP 1 Score: 102 bits (253), Expect = 5.240e-21 Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 118 VEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKP 438
+E +GI+ PTPVQA+ + + R D V + TGSGKTLAFLLP L+++D + VQ+LV+AP REL QIE + EGT +RS + GGAN+ RQ+EKLK DKP
Sbjct: 22 LEKLGITIPTPVQADVIPLVQEGR-DVVAQSQTGSGKTLAFLLPQLQRIDTTKRDVQVLVLAPTRELTVQIESAIREVTEGTEIRSLALVGGANIDRQLEKLK-DKP 126
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A7X3GI31_9BACL (DEAD/DEAH box helicase n=1 Tax=Paenibacillus sp. MMS18-CY102 TaxID=2682849 RepID=A0A7X3GI31_9BACL) HSP 1 Score: 101 bits (252), Expect = 1.610e-20 Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 118 VEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKPQ 441
+EA GI PT VQ+E++ A+L +D + TGSGKTLAFLLP+L QLD +SS+VQ +V+AP +ELA QI V E G+R + GGA V RQ++ LKK KPQ
Sbjct: 18 LEAAGIKEPTAVQSEAIAALLAG-ADVTARSQTGSGKTLAFLLPMLEQLDNASSSVQAIVLAPTQELAMQITRVAQAYGEAVGIRVVSLIGGAAVSRQVDNLKKHKPQ 124
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: UPI000B439CA3 (DEAD/DEAH box helicase n=1 Tax=Indiicoccus explosivorum TaxID=1917864 RepID=UPI000B439CA3) HSP 1 Score: 99.4 bits (246), Expect = 3.890e-20 Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 130 GISAPTPVQAESL-EAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKK 429
G AP PVQAE + E + GN D V + TGSGKTLA+LLPVL + DPS VQ ++VAP +ELA QI +V GTG+ ++ GGANV RQIEKLKK
Sbjct: 19 GFGAPLPVQAEMIPEMLAGN--DVVAQSPTGSGKTLAYLLPVLEKTDPSKQQVQAMIVAPSQELAMQIVNVLRDWTAGTGISVAQLIGGANVQRQIEKLKK 117 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1485.4.1 >prot_P-wetherbeei_contig1485.4.1 ID=prot_P-wetherbeei_contig1485.4.1|Name=mRNA_P-wetherbeei_contig1485.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp MGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSback to top mRNA from alignment at P-wetherbeei_contig1485:5417..6755+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1485.4.1 ID=mRNA_P-wetherbeei_contig1485.4.1|Name=mRNA_P-wetherbeei_contig1485.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1339bp|location=Sequence derived from alignment at P-wetherbeei_contig1485:5417..6755+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1485:5417..6755+ >mRNA_P-wetherbeei_contig1485.4.1 ID=mRNA_P-wetherbeei_contig1485.4.1|Name=mRNA_P-wetherbeei_contig1485.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig1485:5417..6755+ (Phaeothamnion wetherbeei SAG_119_79)back to top |