mRNA_P-wetherbeei_contig1485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1485.1.1
Unique NamemRNA_P-wetherbeei_contig1485.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1485.1.1 vs. uniprot
Match: A0A7S1UAP5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAP5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.210e-10
Identity = 37/132 (28.03%), Postives = 68/132 (51.52%), Query Frame = 1 
Query:   19 EDGKTISLKAFVITLFNYCTKMQSSLTRLMFDMYDETVKGSIDLRAMGAMLADVYGDKWHDNEKAEAIYSTFAA--------QSPMDIAAFEEFAGGLPNLLSAAFAVQHAMQERSLGLRGWQKVANRTRDV 390
            ++  TI  + FV++++NYC+  Q+SL+   FD+YD    G ID   +  ML D+YG +W  ++ A  + ++           +  +  A F  F      LL  AF +Q  +QE+  G+  W+K ++  +++
Sbjct:   90 DENGTIDFREFVVSVWNYCSLSQASLSMFAFDLYDRDGSGEIDTCEVEEMLQDIYGAEWKAHQPARRVMNSVERLRLEEGEEEVCITPATFSSFTKHHTELLRPAFRMQRILQEKICGVDFWKKCSSERQEI 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1UAP5_9STRA5.210e-1028.03Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1485contigP-wetherbeei_contig1485:83..1916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMZ9
PFAMsEF-hand_5
Model size961
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue9.51e-13
EggNOG OGs2CXXS@1|root,2S4MR@2759|Eukaryota
DescriptionEF-hand, calcium binding motif
Cds size960
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1485.1.1prot_P-wetherbeei_contig1485.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1485 83..1916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.4655607-CDS-P-wetherbeei_contig1485:82..1691683186035.4655607-CDS-P-wetherbeei_contig1485:82..169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1485 83..169 +
1683186035.4759254-CDS-P-wetherbeei_contig1485:281..3881683186035.4759254-CDS-P-wetherbeei_contig1485:281..388Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1485 282..388 +
1683186035.4854202-CDS-P-wetherbeei_contig1485:523..7321683186035.4854202-CDS-P-wetherbeei_contig1485:523..732Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1485 524..732 +
1683186035.4950345-CDS-P-wetherbeei_contig1485:877..10161683186035.4950345-CDS-P-wetherbeei_contig1485:877..1016Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1485 878..1016 +
1683186035.5037947-CDS-P-wetherbeei_contig1485:1165..13011683186035.5037947-CDS-P-wetherbeei_contig1485:1165..1301Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1485 1166..1301 +
1683186035.5127585-CDS-P-wetherbeei_contig1485:1391..14111683186035.5127585-CDS-P-wetherbeei_contig1485:1391..1411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1485 1392..1411 +
1683186035.521698-CDS-P-wetherbeei_contig1485:1654..19161683186035.521698-CDS-P-wetherbeei_contig1485:1654..1916Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1485 1655..1916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1485.1.1

>prot_P-wetherbeei_contig1485.1.1 ID=prot_P-wetherbeei_contig1485.1.1|Name=mRNA_P-wetherbeei_contig1485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
SFILFAEDGKTISLKAFVITLFNYCTKMQSSLTRLMFDMYDETVKGSIDL
RAMGAMLADVYGDKWHDNEKAEAIYSTFAAQSPMDIAAFEEFAGGLPNLL
SAAFAVQHAMQERSLGLRGWQKVANRTRDVQAKREQTIRMLLGQAQAMGD
PMSVEEAQSAVLELRRQHAREGWFFGTKFVRLQAMSPMEPPAPENDHGGK
ELPNTPPPAATAGMVAGAARAAAVAARRGSTRRSRKSNDSTSIDRGRAAS
GAEKAALDRLVRARATTQGSRSSTGGAPNDIGGGGGGGDGGSDDADGGGG
SKRRSTKVLAIEAGALEAES
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mRNA from alignment at P-wetherbeei_contig1485:83..1916+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1485.1.1 ID=mRNA_P-wetherbeei_contig1485.1.1|Name=mRNA_P-wetherbeei_contig1485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1834bp|location=Sequence derived from alignment at P-wetherbeei_contig1485:83..1916+ (Phaeothamnion wetherbeei SAG_119_79)
TCATTCATTCTCTTCGCTGAAGATGGAAAGACGATCAGCCTGAAAGCCTT
CGTGATCACCTTATTCAACTACTGCACGAAGATGCAGGTCCGTCCGTGCA
GCAGCCCCGCCGCAGTTCATCACAACCGCCCCTATGTCTGATGATTCTCT
CCTTGCTGTTCCATCCGCCTCTTCCTCATCAAACGCGGATTGCGCACAGA
GCTCCTTGACGCGTTTAATGTTCGACATGTACGACGAAACGGTCAAGGGG
TCGATCGATTTGCGGGCCATGGGGGCAATGCTGGCCGATGTTTACGGCGA
CAAATGGTGCGTTTGGAGTACGAGCTTGACTTTGGAAAGACTCTCGAGTT
TTCCGGCAAGTCCTCGCCGCCGTCGTTAAGGCGAAAATCGCTCTAGGCAG
CGTTTCTGCACCACCTTTCACCGCCTTTGCCCTCGCAGCAGGCACGACAA
CGAGAAGGCGGAAGCCATCTACAGCACCTTCGCCGCCCAATCTCCGATGG
ACATTGCCGCTTTCGAAGAATTCGCTGGCGGGCTACCGAACTTGCTGTCG
GCGGCTTTTGCGGTGCAGCACGCGATGCAGGAGAGGAGCCTGGGGCTGAG
GGGCTGGCAGAAGGTGGCCAATCGGACTCGCGACGTGCAGGCGAAGCGAG
GTGAGGATTAAAGTGCCACCGCGGTACTTCGAGTGATCAATTGCTATAAT
TTGTTTTCAGTTTTCACTGTGTTGGTTGCCTGTCTGCTCACTCTTTACGC
ACTACTCCTTCGGATGTCGGTTTGCTTCCCTCCGAGCTGCGGCAGAGCAA
ACGATTCGGATGCTGCTAGGTCAGGCGCAGGCGATGGGCGACCCAATGTC
CGTAGAGGAAGCGCAGAGTGCCGTTTTGGAGCTACGGCGGCAGCATGCGC
GGGAAGGGTGGTTCTTTGGCACCAAATTCGTAAGGCGAGCGGCCAGCGAC
CCCTGGACGACCATCAGCCTCGTTGCAAGAAACCACAGTATTCACATTAC
AAGCATTTGGAGCACTTGCAGCGATGCGTTTGCGTGCGCTCATTCGCTCA
TAGTCACGTTTTCCCTGCTGTTACTCAAAACAGGCTTCAGGCGATGTCCC
CAATGGAACCACCGGCTCCGGAAAACGACCATGGAGGGAAGGAGCTGCCA
AACACGCCGCCGCCAGCCGCTACGGCAGGAATGGTGGCGGGAGCAGCCAG
AGCTGCGGCGGTGGCGGCGGCGGCTGCAGCGGCAACGGCGAAAGAAACGG
CCGCCGATGAGCCGCTAGGCCCGCTGCCAGGCGAAACTGCCGCTGAGGGA
TCGGAACAGCGGCGAGGATCAACTCGACGGCGAGTAACATGTTCAGCACA
GCTTTTCCCTCTTCTTCTCGCTTTTCTCCCTCCCGCCCTCGCTGCTCACC
TTCAAGAATTCCCTCTTCTACGGACAGCAGTCAGAGCGAGTGCACTGACA
TATTGCAGCTGCTTTCATTTCCCCTATCAACTTTCTCCCGGCCGATGGGG
AAGTGTATTCCCTAACTGCCTTCCTCAAGCGCCCGCCTTGCACCTCCTCC
TCACGTGCCTGGCCATTCGCAGATCACGGAAGTCGAATGATTCGACCAGC
ATCGACCGCGGACGGGCAGCGAGTGGGGCAGAGAAAGCAGCGCTCGACCG
CCTCGTCCGGGCGCGTGCCACAACGCAGGGCTCCCGCAGCAGCACGGGCG
GCGCTCCTAATGACATCGGTGGCGGCGGCGGCGGTGGTGATGGCGGCAGC
GACGATGCGGACGGGGGCGGCGGCAGCAAGCGGCGCTCCACCAAGGTGCT
GGCCATTGAGGCCGGGGCACTCGAGGCTGAAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1485:83..1916+

>mRNA_P-wetherbeei_contig1485.1.1 ID=mRNA_P-wetherbeei_contig1485.1.1|Name=mRNA_P-wetherbeei_contig1485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig1485:83..1916+ (Phaeothamnion wetherbeei SAG_119_79)
TCATTCATTCTCTTCGCTGAAGATGGAAAGACGATCAGCCTGAAAGCCTT
CGTGATCACCTTATTCAACTACTGCACGAAGATGCAGAGCTCCTTGACGC
GTTTAATGTTCGACATGTACGACGAAACGGTCAAGGGGTCGATCGATTTG
CGGGCCATGGGGGCAATGCTGGCCGATGTTTACGGCGACAAATGGCACGA
CAACGAGAAGGCGGAAGCCATCTACAGCACCTTCGCCGCCCAATCTCCGA
TGGACATTGCCGCTTTCGAAGAATTCGCTGGCGGGCTACCGAACTTGCTG
TCGGCGGCTTTTGCGGTGCAGCACGCGATGCAGGAGAGGAGCCTGGGGCT
GAGGGGCTGGCAGAAGGTGGCCAATCGGACTCGCGACGTGCAGGCGAAGC
GAGAGCAAACGATTCGGATGCTGCTAGGTCAGGCGCAGGCGATGGGCGAC
CCAATGTCCGTAGAGGAAGCGCAGAGTGCCGTTTTGGAGCTACGGCGGCA
GCATGCGCGGGAAGGGTGGTTCTTTGGCACCAAATTCGTAAGGCTTCAGG
CGATGTCCCCAATGGAACCACCGGCTCCGGAAAACGACCATGGAGGGAAG
GAGCTGCCAAACACGCCGCCGCCAGCCGCTACGGCAGGAATGGTGGCGGG
AGCAGCCAGAGCTGCGGCGGTGGCGGCGCGGCGAGGATCAACTCGACGAT
CACGGAAGTCGAATGATTCGACCAGCATCGACCGCGGACGGGCAGCGAGT
GGGGCAGAGAAAGCAGCGCTCGACCGCCTCGTCCGGGCGCGTGCCACAAC
GCAGGGCTCCCGCAGCAGCACGGGCGGCGCTCCTAATGACATCGGTGGCG
GCGGCGGCGGTGGTGATGGCGGCAGCGACGATGCGGACGGGGGCGGCGGC
AGCAAGCGGCGCTCCACCAAGGTGCTGGCCATTGAGGCCGGGGCACTCGA
GGCTGAAAGC
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