mRNA_P-wetherbeei_contig14840.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14840.1.1
Unique NamemRNA_P-wetherbeei_contig14840.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: D8LTE8_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 5.170e-28
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 1
Query:   25 FTATGKTVKAIVGTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKVPASRRVVKIKG 222
            FT + KTV A+VG+PLSQLCAKNGIKV+YSCK+G CATC+I++DGR VKAC  +VPASRR+VKIK 
Sbjct:    8 FTNSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIKA 73          
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: A0A835Z7N4_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.840e-18
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   13 VDVLFTATGKTVKAIVGTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKV-PASRRVVKIK 219
            ++V FT + K + A  GT LSQ+ AK G+KVRY+CK GTCATC ++VDGR  KAC++K+ P +RRVVKIK
Sbjct:   48 IEVHFTVSDKKITAEGGTLLSQVAAKAGVKVRYNCKAGTCATCVLNVDGRMQKACVTKLDPFTRRVVKIK 117          
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: A0A7S2SLY0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SLY0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-12
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   28 TATGKTVKAIVGTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKVPASRRVVKIKG 222
            T  GK ++   G+P+   CAK G+K RYSCK+G CA+C ISV G  +K C+ KVP + R+  ++ 
Sbjct:   44 TYNGKAIEFKEGSPMKSACAKLGMKPRYSCKKGDCASCTISVGGTRIKPCVGKVPPAPRLKSLQA 108          
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: A0A8J6C5E1_DIALT (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5E1_DIALT)

HSP 1 Score: 64.3 bits (155), Expect = 1.250e-11
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   37 GKTVKAIVGTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKVPASRRVVKI 216
            GK V    GTPLS+  AK  ++VRY CKEG C  C + V+GR ++ C+SKVP +  V  +
Sbjct:   48 GKAVNVAPGTPLSEAAAKARVRVRYDCKEGKCGMCEVKVNGRAMRTCVSKVPKTGPVTVV 107          
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: A0A7R9UCS5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCS5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.720e-10
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 MAQEVDVLFTATGKTVKAIVGTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKVPASRR 204
            M+  ++V+F   GK   A  G P   + A+ G K  Y CK+G+C  C I V+G+ V+ C++KVPAS +
Sbjct:   61 MSMNIEVVFPG-GKKTTAKAGEPFKNVAARAGFKPTYGCKQGSCGACEIKVNGKKVRPCVAKVPASNK 127          
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: B8C2R5_THAPS (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2R5_THAPS)

HSP 1 Score: 57.0 bits (136), Expect = 1.680e-8
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   28 TATGKTV-KAIVGTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKVPASR 201
            T  GK V   +V   +SQ+C    +KV Y+C+ G C TC + ++GR ++AC+SKVP+ +
Sbjct:   74 TVNGKAVPNVVVDQKISQVCNAARVKVPYNCQNGECGTCTVKMNGRKIRACVSKVPSGK 132          
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: A0A6U3D1F4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3D1F4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.550e-8
Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   61 GTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKVPASRRVVKIK 219
            G+PL     + G+ V+YSC +G CATC +++ GRY K C++KVP   R+  ++
Sbjct:   48 GSPLKTAVKQLGVPVKYSCNKGDCATCQVTLAGRYTKPCVAKVPEEPRLKSLQ 100          
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: A0A7R9UED6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UED6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.280e-8
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    7 QEVDVLFTATGKTVKAIVGTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKVP 192
            ++V V F   GK ++A+ G  L ++     + V+Y+C +G C TC I VDG+  +AC+S +P
Sbjct:   66 RKVQVTFQPGGKVIQAVAGQKLKEVVRAGRLPVKYNCNKGDCGTCEILVDGKKTRACVSSLP 127          
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: A0A7S3ZYK0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYK0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.690e-8
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 MAQEVDVLFTATGKT--VKAIVGTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKVP 192
            +A  + VLF     T   +A VGTPLS++ ++    +RY CK+G C TC + V+G++V+ C++ VP
Sbjct:   57 LAGSIQVLFKQGNATKMTRAEVGTPLSEVASQADQFIRYKCKKGECGTCEVQVNGKWVRTCVATVP 122          
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Match: A0A7S0U866_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U866_HEMAN)

HSP 1 Score: 57.8 bits (138), Expect = 4.770e-8
Identity = 22/56 (39.29%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   52 AIVGTPLSQLCAKNGIKVRYSCKEGTCATCNISVDGRYVKACISKVPASRRVVKIK 219
            A+VG PLS + ++ G  ++Y CK G C TC + +DG +V+ C++KVP   +  ++K
Sbjct:  175 ALVGAPLSSVASQAGQYIKYKCKVGECGTCEVRIDGNWVRTCVAKVPPMDKGAELK 230          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14840.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LTE8_ECTSI5.170e-2872.732Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A835Z7N4_9STRA4.840e-1858.572Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2SLY0_9STRA1.750e-1244.62Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8J6C5E1_DIALT1.250e-1146.672Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7R9UCS5_9STRA6.720e-1039.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B8C2R5_THAPS1.680e-840.682Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A6U3D1F4_9STRA2.550e-841.51Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9UED6_9STRA3.280e-837.10Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3ZYK0_9STRA4.690e-839.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0U866_HEMAN4.770e-839.29Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14840contigP-wetherbeei_contig14840:939..1538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps22712
PFAMsFer2
Model size225
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.76e-09
EggNOG OGs2EAS1@1|root,2SGYY@2759|Eukaryota,2XDS1@2836|Bacillariophyta
Ec32 ortholog descriptionBeta-grasp domain
Ec32 orthologEc-02_006080.1
Description2Fe-2S iron-sulfur cluster binding domain
Cds size225
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.1875792-CDS-P-wetherbeei_contig14840:938..10071683186035.1875792-CDS-P-wetherbeei_contig14840:938..1007Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14840 939..1007 -
1683186035.1996167-CDS-P-wetherbeei_contig14840:1382..15381683186035.1996167-CDS-P-wetherbeei_contig14840:1382..1538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14840 1383..1538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14840.1.1prot_P-wetherbeei_contig14840.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14840 939..1538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14840.1.1

>prot_P-wetherbeei_contig14840.1.1 ID=prot_P-wetherbeei_contig14840.1.1|Name=mRNA_P-wetherbeei_contig14840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
MAQEVDVLFTATGKTVKAIVGTPLSQLCAKNGIKVRYSCKEGTCATCNIS
VDGRYVKACISKVPASRRVVKIKG*
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mRNA from alignment at P-wetherbeei_contig14840:939..1538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14840.1.1 ID=mRNA_P-wetherbeei_contig14840.1.1|Name=mRNA_P-wetherbeei_contig14840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig14840:939..1538- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCAGGAGGTCGACGTCTTGTTCACCGCGACCGGCAAGACGGTCAA GGCCATCGTCGGCACCCCACTGTCACAGCTGTGCGCCAAGAACGGCATCA AGGTCCGGTACAGCTGCAAAGAGGGCACCTGTGCCACCTGCAACATCAGC GTCGATGTGAGTCTTGACCGCGGCGATCCTTGTCTTTTTCCAGACCGCTG CAGTTTATGTATTTCTTTCGAACTCAAGGAGCCTCGGAAAGACGCAAAGA TCGAGCGGGCAGCATGTTGTTTTGATGCTTAATGGCTGCCGGAGTCCAGG TGAAAAGTGCTCTGGTTCCATCGCCGGAATTGTCACGTCTGGTCGTTTGA CCTCCATTTTGAACGTTTAAGTCGTGTGGTTACTGACTTCATCGTGCTGA CGGCACCAACTGCGAAAGATCCCGCACAGCCTCCAGATAATCCTGTATTG CGAAGCTTAAAGAGGCCTCTAACAATGGCCATCTCTCTTCCGCCAAACTC CGACCTGTCTTTCCCGATGCATCGTGAACAGGGGCGCTACGTGAAGGCAT GCATCTCGAAAGTGCCGGCCAGCCGAAGGGTAGTAAAAATTAAGGGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14840:939..1538-

>mRNA_P-wetherbeei_contig14840.1.1 ID=mRNA_P-wetherbeei_contig14840.1.1|Name=mRNA_P-wetherbeei_contig14840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig14840:939..1538- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCAGGAGGTCGACGTCTTGTTCACCGCGACCGGCAAGACGGTCAA
GGCCATCGTCGGCACCCCACTGTCACAGCTGTGCGCCAAGAACGGCATCA
AGGTCCGGTACAGCTGCAAAGAGGGCACCTGTGCCACCTGCAACATCAGC
GTCGATGGGCGCTACGTGAAGGCATGCATCTCGAAAGTGCCGGCCAGCCG
AAGGGTAGTAAAAATTAAGGGGTAG
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