mRNA_P-wetherbeei_contig14829.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: A0A7C2YWE1_9PROT (GntR family transcriptional regulator n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YWE1_9PROT) HSP 1 Score: 346 bits (887), Expect = 1.110e-118 Identity = 178/221 (80.54%), Postives = 198/221 (89.59%), Query Frame = 1
Query: 4 IPLLTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAIMTSNTVMNIAIT 666
IPLLTDRAYERIKHDI+ CAIAPGTEVSE QLC HY+LGKAPVRMAL RLAH+GL+RAIPRRGYMVTA+TLKDI D+FELRLMLEP AA MAAG+V QRLR LDE+CR GYQS D KSI+RF++A KAFHVAIAQATGN RLA V +LLD+MTRLLHLGLGLRNRSQEMQHE RALVKAL RGD TAER+SREQIEA R+MVLSAI+TS++V+N+AIT
Sbjct: 5 IPLLTDRAYERIKHDIICCAIAPGTEVSEAQLCAHYKLGKAPVRMALTRLAHEGLVRAIPRRGYMVTAVTLKDIQDMFELRLMLEPAAARMAAGRVQAQRLRALDEACRAGYQSGDAKSISRFIDATKAFHVAIAQATGNLRLACAVEELLDEMTRLLHLGLGLRNRSQEMQHEQRALVKALLRGDGATAERLSREQIEATRNMVLSAILTSSSVVNLAIT 225
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: A0A1F4DE76_9PROT (HTH gntR-type domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DE76_9PROT) HSP 1 Score: 340 bits (873), Expect = 2.060e-116 Identity = 175/223 (78.48%), Postives = 193/223 (86.55%), Query Frame = 1
Query: 4 IPLLTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAIMTSNTVMNIAITGE 672
IPLLTDRAYERIKHDI+ CAIAPG E+SE QLC Y+LGKAPVRMAL RLAHDGL+RAIPRRGYMV +TLKDI DVFELRLMLEP AA MAAG+VD QRLR LDE CR GYQS D+KSI+RFL+ANKAFHVAIAQA GN RLA + +LLD+MTRLLHLGLGLRNRSQEMQHEHR L+KAL RGD TAERI R+QIEAAR+MVLSAI+TS + MN+AI E
Sbjct: 18 IPLLTDRAYERIKHDIICCAIAPGAEISEAQLCLQYKLGKAPVRMALSRLAHDGLVRAIPRRGYMVMPVTLKDIQDVFELRLMLEPAAARMAAGRVDAQRLRTLDEVCRAGYQSGDVKSISRFLDANKAFHVAIAQAAGNSRLADAIEKLLDEMTRLLHLGLGLRNRSQEMQHEHRTLMKALVRGDGGTAERICRDQIEAARNMVLSAILTSRSAMNLAIAME 240
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: A0A1F3ZXB1_9PROT (HTH gntR-type domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZXB1_9PROT) HSP 1 Score: 327 bits (837), Expect = 3.950e-111 Identity = 165/221 (74.66%), Postives = 192/221 (86.88%), Query Frame = 1
Query: 4 IPLLTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAIMTSNTVMNIAIT 666
IPLLTDRAYERI+HDI+ C IAPG E++E QLC HY+LGKAPVRMAL RLAH+GL+RAIPRRG+MV+ +TLKDI D+FELR MLEPQAA MAAGKV+ QRL+ LDE+C GYQ D KSI RFLEA KAF VA+A+ATGN RLA +AQLLD MTRLLHLGLGLRNRSQE+Q EHRALVKAL RGD +TA+RI REQIEAAR+MVLSA++TS ++MN+A+T
Sbjct: 5 IPLLTDRAYERIRHDIICCVIAPGAEITEAQLCLHYKLGKAPVRMALHRLAHEGLVRAIPRRGHMVSPVTLKDIQDIFELRQMLEPQAARMAAGKVNAQRLKALDEACGGGYQPGDAKSIDRFLEAYKAFRVAVAEATGNARLAHAIAQLLDGMTRLLHLGLGLRNRSQELQQEHRALVKALVRGDGDTAQRICREQIEAARNMVLSAVLTSKSIMNVALT 225
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: UPI00198723DA (GntR family transcriptional regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI00198723DA) HSP 1 Score: 278 bits (711), Expect = 1.220e-91 Identity = 141/221 (63.80%), Postives = 174/221 (78.73%), Query Frame = 1
Query: 1 AIPLLTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAIMTSNTVMNIAI 663
A PLL D+AYERIK D++ C + PG+ +SE QL YRLGKAP+RMAL RLAH+GL+RA+PRRGY+V+ +TL+DI D+FELRL+LEPQAA AAGKVD RL++LD+ CR GY+ D+ RFLEAN +FHV IAQATGN RLA ++ LLD+MTRLLH+GL R+RS EMQHEH ALVKAL RGD +TA I REQIEAAR+MVL A + S ++ +AI
Sbjct: 25 AEPLLNDQAYERIKRDVIACVLPPGSSISESQLGGQYRLGKAPIRMALQRLAHEGLVRALPRRGYVVSPVTLQDIQDIFELRLLLEPQAARQAAGKVDASRLKLLDDVCRAGYRPGDVVGTQRFLEANASFHVTIAQATGNQRLAHLIEALLDEMTRLLHMGLTSRDRSSEMQHEHGALVKALRRGDGDTAALICREQIEAARTMVLHAALNSRAMLTMAI 245
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: UPI00191A5745 (GntR family transcriptional regulator n=2 Tax=Ramlibacter monticola TaxID=1926872 RepID=UPI00191A5745) HSP 1 Score: 224 bits (570), Expect = 2.180e-70 Identity = 112/222 (50.45%), Postives = 157/222 (70.72%), Query Frame = 1
Query: 4 IPLLTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAIMTSNTVMNIAITG 669
+P LTD+ Y I+ DI++ +APG +SE L T Y GK PVR+AL RL +GL+ A PRR + V+ ITL+D+HD++ LRL+LEP AA +AAG++DV+ L+ +D CR GY D S RFLEAN+ FH+ IAQA+GN R ++ Q+ D+ TR++H GL RNRS EMQHEH AL+ AL RGD++ A RI+ EQ+ A+R MVL+A++ S +++ +TG
Sbjct: 13 LPPLTDQVYGAIRRDILSGVLAPGAAISEASLVTRYGFGKTPVRLALSRLRQEGLVSASPRRSFAVSPITLRDVHDLYGLRLVLEPAAARLAAGRIDVRALKKVDAVCRRGYVPGDAASTLRFLEANRDFHLGIAQASGNLRFVKLLGQVFDETTRVMHFGLASRNRSVEMQHEHEALLAALERGDADAASRIAEEQVAASRDMVLAALLQSADLLDRPLTG 234
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: A0A4V2NJZ9_9PROT (GntR family transcriptional regulator n=3 Tax=Acetobacteraceae TaxID=433 RepID=A0A4V2NJZ9_9PROT) HSP 1 Score: 221 bits (562), Expect = 2.270e-69 Identity = 118/210 (56.19%), Postives = 150/210 (71.43%), Query Frame = 1
Query: 1 AIPLLTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAI 630
A P LT+RA ++ DI+T +APG VSE + H LGKAPVR AL RLA +GL+ A+PRRG+MV+ +T++DIH+VF+LRLMLEP+AA AAG+VD Q L LD C GY D S RFL+ANKAFHVAIA+ GN RLA + +LLD+ TR+L LGL R+R+ EM HEH LV+ALA G +E A RI EQ+ A+R MVL+A+
Sbjct: 9 APPSLTERAVAELRRDILTARLAPGETVSEGAVAQHLELGKAPVRAALARLAEEGLVIAVPRRGWMVSLVTIRDIHEVFDLRLMLEPEAARRAAGRVDAQILARLDAVCAEGYDCADEDSAMRFLDANKAFHVAIAELAGNARLARQLDRLLDESTRMLVLGLRPRDRTGEMAHEHHVLVEALALGRAEEAARIMHEQVSASRKMVLAAL 218
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: UPI001BCACD4D (GntR family transcriptional regulator n=1 Tax=Roseococcus sp. SDR TaxID=2835532 RepID=UPI001BCACD4D) HSP 1 Score: 219 bits (559), Expect = 6.470e-69 Identity = 115/208 (55.29%), Postives = 151/208 (72.60%), Query Frame = 1
Query: 7 PLLTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAI 630
P LT+RA ++ +I+T +APG VSE + H LGKAPVR AL RLA +GL++A+PRRG+MV+ +T++DIH+VF+LRLMLEP+AA AAG+VD LR LD C GY D +S FL+ANK FHVAIA+ +GN RLA + +LLD+ TR+L LGL R+R+ EM HEH ALV+ALA G +E A RI EQ+ A+R MVL+A+
Sbjct: 11 PSLTERAVSALRREILTTRLAPGETVSEAAVAAHLELGKAPVRAALARLAEEGLVQAVPRRGWMVSLVTIRDIHEVFDLRLMLEPEAARRAAGRVDAVMLRRLDAICAEGYDCADAESAMCFLDANKQFHVAIAELSGNARLARQLDRLLDESTRMLVLGLRPRDRTGEMAHEHHALVEALALGRAEEAARIMHEQVSASRQMVLAAL 218
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: UPI00195FB9B5 (GntR family transcriptional regulator n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI00195FB9B5) HSP 1 Score: 220 bits (560), Expect = 7.370e-69 Identity = 108/217 (49.77%), Postives = 152/217 (70.05%), Query Frame = 1
Query: 13 LTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAIMTSNTVMNIAI 663
L + AY+RIK I+ C PG ++E QL LGKAP+R AL RL DG ++++PR+GY+V ITL+D+H +FE+RL+LEP AA AAGK+D +R++ L+ C+ GY D S + FLEANK FH+A+ GN +L +++ +L++M+RL HLGL LRNR+ EM+HEHR L+ AL GD ETAE+++ QIEAAR MVL AI+ S+ ++ I
Sbjct: 22 LGEIAYDRIKEKIIRCEFEPGAAITEAQLALQIGLGKAPIRRALSRLVQDGFVKSLPRKGYVVAPITLRDVHQLFEIRLLLEPAAARKAAGKIDPKRIQELERICQAGYVPGDRASESAFLEANKDFHIAVVDGAGNQKLTRILSHILEEMSRLFHLGLALRNRTDEMKHEHRELIDALVAGDGETAEKVTIAQIEAARRMVLDAILASSNFQSVEI 238
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: UPI001EDFF63F (GntR family transcriptional regulator n=1 Tax=unclassified Xanthobacter TaxID=2623496 RepID=UPI001EDFF63F) HSP 1 Score: 217 bits (552), Expect = 9.300e-68 Identity = 104/215 (48.37%), Postives = 154/215 (71.63%), Query Frame = 1
Query: 13 LTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAIMTSNTVMNI 657
+T RAY I+ DIM C +APG+EVS L H+ G PVR+AL RL DGL++A+PR+GY+V +TLK + D+FE+R +LEP A AAGK+D +L L+ C Y + +S +LEAN+AFHV IA++ GN +L ++Q+LD+MTR+L +GLGLRNR+ EMQHEH+ALV+AL D+E AER++ +++ +++ MVL AI++S+ + ++
Sbjct: 7 ITGRAYAAIRQDIMRCTLAPGSEVSAAHLAEHFGFGLGPVRIALSRLEQDGLVKALPRKGYLVIPVTLKSVLDIFEMRALLEPYVARKAAGKIDPAKLAFLNSVCNRDYNHRNAQSRLEYLEANRAFHVFIAESAGNQKLTGTLSQILDEMTRILFMGLGLRNRTTEMQHEHKALVEALVANDAEEAERLAAQEVISSKQMVLDAILSSSAIQDV 221
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Match: A0A1V2H0P0_9PROT (GntR family transcriptional regulator n=2 Tax=Roseomonas TaxID=125216 RepID=A0A1V2H0P0_9PROT) HSP 1 Score: 216 bits (551), Expect = 1.050e-67 Identity = 113/215 (52.56%), Postives = 155/215 (72.09%), Query Frame = 1
Query: 7 PLLTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRLAHDGLLRAIPRRGYMVTAITLKDIHDVFELRLMLEPQAAHMAAGKVDVQRLRVLDESCRPGYQSNDIKSITRFLEANKAFHVAIAQATGNGRLAVMVAQLLDQMTRLLHLGLGLRNRSQEMQHEHRALVKALARGDSETAERISREQIEAARSMVLSAIMTSNTVM 651
P LT++A ++ +I+T + PG +SE LGKAPVR AL RLA +GL++A+PRRG++V+ +T++DIH+VF+LRLMLEP+AA AAG+VD LR LD C GY+ D +S FL+ANKAFHVA+A+ +GNGRLA V +LLD+ TR+L LGL R+R+ EM HEH AL++ALA G +E A I R+Q+ A+RSMVL+A+ T + M
Sbjct: 11 PSLTEQAVATLRREILTTRLLPGETLSEASAAQLLGLGKAPVRAALARLAEEGLVQAVPRRGWIVSLVTIRDIHEVFDLRLMLEPEAARRAAGRVDTAELRRLDSVCACGYRPEDEESTHAFLDANKAFHVAVAELSGNGRLARQVDRLLDESTRMLALGLRRRDRTGEMAHEHHALIEALALGRAEDAGSIMRQQVSASRSMVLAALTTPESAM 225 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14829.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig14829.1.1 >prot_P-wetherbeei_contig14829.1.1 ID=prot_P-wetherbeei_contig14829.1.1|Name=mRNA_P-wetherbeei_contig14829.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp AIPLLTDRAYERIKHDIMTCAIAPGTEVSEPQLCTHYRLGKAPVRMALIRback to top mRNA from alignment at P-wetherbeei_contig14829:8..679- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig14829.1.1 ID=mRNA_P-wetherbeei_contig14829.1.1|Name=mRNA_P-wetherbeei_contig14829.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig14829:8..679- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig14829:8..679- >mRNA_P-wetherbeei_contig14829.1.1 ID=mRNA_P-wetherbeei_contig14829.1.1|Name=mRNA_P-wetherbeei_contig14829.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig14829:8..679- (Phaeothamnion wetherbeei SAG_119_79)back to top |