mRNA_P-wetherbeei_contig14814.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14814.2.1
Unique NamemRNA_P-wetherbeei_contig14814.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: A0A3C0TYL7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYL7_9PROT)

HSP 1 Score: 171 bits (432), Expect = 1.410e-51
Identity = 81/156 (51.92%), Postives = 106/156 (67.95%), Query Frame = 1
Query:   13 EDPKFIIDLELKFFRPELIEFLAYWNAKRGARPFPSRKDIAPREIEKLLPWINMYDTLDGGKESRVRLIGTALSDALGGGDYSGKPVSELPQLLSKRIQRGINLVLETRAPLRTYAIESAIPGQDFQGNESCLAPLSTNGADIDMIIVVAILQNRK 480
            +D  F    +L F R EL EFL YW +K   R FP+R DI PREIE+LLPW+NMYD    G+E R+RL+G+ LS     GD  GKP+S  P LL+ R ++GI+ VLETR P+R  A  S+IPGQ+FQG E C  PLS NG DI++++V+A+L+  K
Sbjct:    4 KDGGFTRQPDLNFSRGELTEFLDYWRSKSRERNFPTRADINPREIERLLPWVNMYDVSPEGEEHRIRLLGSVLSSNFNIGDLRGKPLSSFPPLLASRARKGIDWVLETRGPIRAVATSSSIPGQEFQGTEICAVPLSDNGQDINIVMVIALLEKHK 159          
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: A0A353LU28_9PROT (Uncharacterized protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LU28_9PROT)

HSP 1 Score: 163 bits (412), Expect = 1.490e-48
Identity = 82/155 (52.90%), Postives = 105/155 (67.74%), Query Frame = 1
Query:   16 DPKFIIDLELKFFRPELIEFLAYWNAKRGARPFPSRKDIAPREIEKLLPWINMYDTLDGGKESRVRLIGTALSDALGGGDYSGKPVSELPQLLSKRIQRGINLVLETRAPLRTYAIESAIPGQDFQGNESCLAPLSTNGADIDMIIVVAILQNRK 480
            D  F I  +L F RPEL  FL YW  KR  R FP R +I P E  KLLPWINMYD LDGG++ RVR+ GTAL++ +G  +  GK VSE+   +++RI+  +  VLE RAP+R     SA+PGQDFQG+E C  PLS++G DID+IIV ++L  RK
Sbjct:    7 DDNFCIITQLDFRRPELNTFLEYWLNKRADRIFPRRSEINPAEFPKLLPWINMYDVLDGGRDFRVRICGTALTEVIGF-EVGGKLVSEIDPPIARRIKLTLQAVLEMRAPIRATTSRSALPGQDFQGSEVCALPLSSDGTDIDIIIVASLLDTRK 160          
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: A0A2N3ENK7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3ENK7_9PROT)

HSP 1 Score: 90.5 bits (223), Expect = 9.050e-20
Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   31 IDLELKFFRPELIEFLAYWNAKRGARPFPSRKDIAPREIEKLLPWINMYDTLDGGK---ESRVRLIGTALSDALGGGDYSGKPVS-ELPQLLSKRIQRGINLVLETRAPLRTYAIESAIPGQDFQGNESCLAPLSTNGADIDMII 453
            ID  L F    L E LAYW  KRG RPFP+R DI P EI   LP + + D L         RVRL+GTAL++ L   D++G+P+  E+P+ +   I + + +V + R PLR + +            E+ L PL+T GA + M++
Sbjct:   30 IDPLLAFQDGRLREMLAYWEGKRGGRPFPARADINPAEIISHLPSVFLVDALAPASTLAHFRVRLMGTALNE-LFARDFTGRPLEGEVPEKMGAAIVKLLGIVCQLRRPLRVHGVAVFAKAGPSTAIEAALMPLTTGGAGVGMVM 173          
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: A0A8I1URS1_9PROT (PAS domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A8I1URS1_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 2.770e-19
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   58 PELIEFLAYWNAKRGARPFPSRKDIAPREIEKLLPWINMYDTLDGGKESRVRLIGTALSDALGGGDYSGKPVSELPQLLSKRIQRGINLVLETRAPLRTYAIESAIPG---QDFQGNESCLAPLSTNGADIDMII 453
            P L   L YWNAKRGARP P+RKDI P E+++ L W+N+ D L GG++ R RLIGT +++     + +G+ VS+        +Q  +  +    A  R     S  P    + F+  ES   PLS +G  +++I+
Sbjct:   20 PTLAVLLDYWNAKRGARPMPARKDIRPNELKEHLGWVNLVDVLPGGRDFRYRLIGTLVTEYFLA-ESTGQTVSQAFARWGSAVQSTVLQLFSATARNRKVIYASGAPNTLARGFEAYESLFFPLSDDGETVNVIM 153          
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: A0A2N3C5R5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-3 TaxID=2013666 RepID=A0A2N3C5R5_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 1.390e-18
Identity = 52/145 (35.86%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   31 IDLELKFFRPELIEFLAYWNAKRGARPFPSRKDIAPREIEKLLPWINMYDTLDGG---KESRVRLIGTALSDALGGGDYSGKPVS-ELPQLLSKRIQRGINLVLETRAPLRTYAIESAIPGQDFQGNESCLAPLSTNGADIDMII 453
            ID  L F    L E  AYW +KRG RPFP+R D++P +I   LP + + D         + RVRL+GTAL+D L   D++G+ +  E+P   +  + R   +V + R PLR Y        Q     E+ L PL+T    +DM++
Sbjct:   17 IDPLLAFQDARLREMFAYWQSKRGGRPFPARTDVSPGDIVNHLPSVFLIDARPPALTLSDFRVRLMGTALND-LFARDFTGRSLEGEMPAKSAAALARVFGIVCQLRRPLRLYGAAVFARAQPLTAVEAVLMPLTTGSGSVDMVM 160          
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: UPI00082F961F (PAS domain-containing protein n=1 Tax=Kordiimonas lipolytica TaxID=1662421 RepID=UPI00082F961F)

HSP 1 Score: 80.5 bits (197), Expect = 4.760e-16
Identity = 46/131 (35.11%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   85 WNAKRGARPFPSRKDIAPREIEKLLPWINMYDTLDGGKESRVRLIGTALSDALGGGDYSGKPVSELPQLLSKRIQRGINLVLETRAPLRTYAIESAIPGQDFQGNESCLAPLSTNGADIDMIIVVAILQNR 477
            W  K+G R FP + D+ P  + + LP+I + D LDGGK+ R+RL+G++++D LG  DY+G  +SE P+ L  R +    L ++ RAP+  Y  E A  G++    E+ L PLS    ++  ++ +++   R
Sbjct:   37 WREKKGDREFPLKSDLHPSLMARYLPYIYIVDILDGGKDYRIRLLGSSVADMLGK-DYTGTLLSETPEELDWRGEI-YGLCMKRRAPV-FYLFELAPFGRETVVTENALFPLSDGDGNLAHLLCMSVEVGR 164          
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: A0A545U1U4_9PROT (PAS domain-containing protein n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545U1U4_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 1.920e-13
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   76 LAYWNAKRGARPFPSRKDIAPREIEKLLPWINMYDTLDGGKESRVRLIGTALSDALGGGDYSGKPVSELP-QLLSKRIQRGINLVLETRAPLRTYAIESAIPGQDFQGNESCLAPLSTNGADIDMIIVVAILQNRK 480
            L YW   RG R  PSR D+ P +I ++LP + + D  +   + R RLIGT ++  L   D++GK +SE+P Q    +I      V+  + P+ T         +DF  +E  + PLS +GA ++M+ VV    +R 
Sbjct:   61 LDYWIRIRGERMMPSRADLDPLDIRRILPNVVLIDVANDPLDFRYRLIGTKIASQLNN-DHTGKWMSEIPHQKPPSKIWSSCETVVNEKIPMTTEVPYEG-RNKDFSVSEDIVMPLSADGATVNMLFVVVDFFSRS 194          
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: UPI001A05334E (PAS domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A05334E)

HSP 1 Score: 70.9 bits (172), Expect = 2.510e-12
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 1
Query:   82 YWNAKRGARPFPSRKDIAPREIEKLLPWINMYDTLDGGKESRVRLIGTALSDALGGGDYSGKPVSEL---PQLLSKRIQRGINLVLETRAPLRTYAIESAIPGQDFQGNESCLAPLSTNGADIDMII 453
            YWNAKRG RP P+R+DI P EI  LL ++N+Y+  D  ++ +VRL G+ +++ LG  D +GK  S +   P  +S +    I  V + R  +   ++  A  G+ +      + PL ++G  +DMI+
Sbjct:   26 YWNAKRGDRPAPTRRDIDPVEIPDLLGFVNIYEVQDEPRDFKVRLNGSEVAEMLGQ-DITGKYCSTVISGPDAVSYKTAFDI-CVDQCRPAIVETSL--AFCGKPYMAQTIIVLPLGSDGESVDMIV 148          
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: A0A192IEC9_9HYPH (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IEC9_9HYPH)

HSP 1 Score: 68.2 bits (165), Expect = 2.460e-11
Identity = 54/155 (34.84%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   31 IDLELKFFRPELIEFLAYWNAKRGARPFPSRKDIAPREIEK-LLPWINMYDTLDG-GKESRVR--LIGTALSDALGGGDYSGKPVSELPQLLS-KRIQRGINLVLETRAPLRTYAIESAIPGQDFQGNESCLAPLSTNGADIDMIIVVAILQNRK 480
            +D EL    P L E L  W A RG R  P+R+D  P E  + LLP I + D   G G ESR R  LIGT ++  LG  D +G+   E+    +   I  G   VL  R P+RT   ++ +  + +  +E+   PLS +G  +D I+V   L++ +
Sbjct:   17 LDPELAVVSPVLAEALRLWEALRGPRQMPARRDFDPAETPRALLPHILLIDVDAGEGAESRFRWRLIGTHVTTMLGR-DMTGRWFDEIYDAGTLTSITTGPRWVLANRRPVRTVG-QAPVDERSYLRSENLHMPLSDDGRRVDKILVATDLRSIR 169          
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Match: A0A5J6MLE7_9PROT (Uncharacterized protein n=1 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MLE7_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 2.940e-11
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   49 FFRPELIEFLAYWNAKRGARPFPSRKDIAPREIEKLLPWINMYDTLDGGKESRVRLIGTALSDALGGGDYSGKPVSELPQLLSKRIQRGINLVLETRAPLRT 354
            F+   L +  AYW+AKRG RP PSR+D+ PR+I +LLP++++ D        R RL+G+ L D +G  + SGK V+++         R  + +LET   L T
Sbjct:    5 FWDDRLADLFAYWSAKRGNRPAPSRRDLDPRDITRLLPFLHLIDVEPEPMRFRHRLVGSELVDMMGR-NVSGKYVTDV------FYGRAADEILETMRSLAT 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14814.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYL7_9PROT1.410e-5151.92Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A353LU28_9PROT1.490e-4852.90Uncharacterized protein n=4 Tax=Alphaproteobacteri... [more]
A0A2N3ENK7_9PROT9.050e-2037.93Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A8I1URS1_9PROT2.770e-1936.30PAS domain-containing protein n=1 Tax=Alphaproteob... [more]
A0A2N3C5R5_9PROT1.390e-1835.86Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI00082F961F4.760e-1635.11PAS domain-containing protein n=1 Tax=Kordiimonas ... [more]
A0A545U1U4_9PROT1.920e-1333.09PAS domain-containing protein n=1 Tax=Denitrobacul... [more]
UPI001A05334E2.510e-1234.65PAS domain-containing protein n=1 Tax=Proteobacter... [more]
A0A192IEC9_9HYPH2.460e-1134.84Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A5J6MLE7_9PROT2.940e-1138.24Uncharacterized protein n=1 Tax=Hypericibacter ter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14814contigP-wetherbeei_contig14814:368..850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_0103
PFAMsPAS_5
Model size483
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.98e-15
EggNOG OGsCOG5388@1|root,COG5388@2|Bacteria,1P19M@1224|Proteobacteria,2UV5H@28211|Alphaproteobacteria
DescriptionPAS domain
Cds size483
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.2885416-CDS-P-wetherbeei_contig14814:367..8501683186034.2885416-CDS-P-wetherbeei_contig14814:367..850Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14814 368..850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14814.2.1prot_P-wetherbeei_contig14814.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14814 368..850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14814.2.1

>prot_P-wetherbeei_contig14814.2.1 ID=prot_P-wetherbeei_contig14814.2.1|Name=mRNA_P-wetherbeei_contig14814.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MFPIEDPKFIIDLELKFFRPELIEFLAYWNAKRGARPFPSRKDIAPREIE
KLLPWINMYDTLDGGKESRVRLIGTALSDALGGGDYSGKPVSELPQLLSK
RIQRGINLVLETRAPLRTYAIESAIPGQDFQGNESCLAPLSTNGADIDMI
IVVAILQNRK*
back to top

mRNA from alignment at P-wetherbeei_contig14814:368..850-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14814.2.1 ID=mRNA_P-wetherbeei_contig14814.2.1|Name=mRNA_P-wetherbeei_contig14814.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig14814:368..850- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTCCCATAGAAGACCCGAAATTTATCATCGATCTGGAGTTAAAATT CTTTCGACCGGAATTGATTGAATTTCTGGCCTATTGGAATGCAAAACGTG GCGCGCGGCCATTTCCCAGCCGCAAGGATATTGCGCCGCGCGAAATTGAA AAGCTGCTTCCGTGGATCAACATGTATGACACACTGGATGGCGGTAAAGA GTCCCGCGTCCGGTTAATTGGGACAGCCTTATCTGATGCGCTGGGCGGCG GGGATTATAGCGGCAAACCTGTTTCCGAATTGCCGCAATTGCTTTCCAAA CGCATTCAGCGCGGCATCAATCTGGTGCTGGAAACCCGCGCGCCCCTGCG CACCTATGCGATTGAATCCGCCATTCCTGGGCAGGACTTCCAGGGCAATG AATCCTGCCTGGCGCCATTGTCAACGAACGGCGCCGATATCGATATGATT ATCGTCGTTGCCATATTACAAAACCGAAAATAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14814:368..850-

>mRNA_P-wetherbeei_contig14814.2.1 ID=mRNA_P-wetherbeei_contig14814.2.1|Name=mRNA_P-wetherbeei_contig14814.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig14814:368..850- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTCCCATAGAAGACCCGAAATTTATCATCGATCTGGAGTTAAAATT
CTTTCGACCGGAATTGATTGAATTTCTGGCCTATTGGAATGCAAAACGTG
GCGCGCGGCCATTTCCCAGCCGCAAGGATATTGCGCCGCGCGAAATTGAA
AAGCTGCTTCCGTGGATCAACATGTATGACACACTGGATGGCGGTAAAGA
GTCCCGCGTCCGGTTAATTGGGACAGCCTTATCTGATGCGCTGGGCGGCG
GGGATTATAGCGGCAAACCTGTTTCCGAATTGCCGCAATTGCTTTCCAAA
CGCATTCAGCGCGGCATCAATCTGGTGCTGGAAACCCGCGCGCCCCTGCG
CACCTATGCGATTGAATCCGCCATTCCTGGGCAGGACTTCCAGGGCAATG
AATCCTGCCTGGCGCCATTGTCAACGAACGGCGCCGATATCGATATGATT
ATCGTCGTTGCCATATTACAAAACCGAAAATAG
back to top