mRNA_P-wetherbeei_contig14814.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14814.1.1
Unique NamemRNA_P-wetherbeei_contig14814.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14814.1.1 vs. uniprot
Match: A0A3C0TRJ0_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TRJ0_9PROT)

HSP 1 Score: 124 bits (310), Expect = 1.310e-34
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   82 YWKAKRGTRLYPGRTDIKPGEITPLLPWTHMHDVISGGEEFRIRLIGTILSDTFGDGNMRGEPISVLPPGVFARVKQGIERVIEARAPVR 351
            YW AKR  R +P R DI P +I  LLPW H+HDV   GEE  IRL+GT+LS+TFGDG+MRG+P+S LP GV+ARVKQ I  V++ARAP+R
Sbjct:    1 YWNAKRAGREFPSREDITPRDIPHLLPWLHLHDVPPSGEEIHIRLVGTMLSETFGDGDMRGKPLSTLPAGVYARVKQAINWVMDARAPIR 90          
BLAST of mRNA_P-wetherbeei_contig14814.1.1 vs. uniprot
Match: A0A1G6VIA3_9PROT (PAS domain-containing protein n=2 Tax=Kordiimonas lacus TaxID=637679 RepID=A0A1G6VIA3_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-7
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   46 KFVRPELHDFLSYWKAKRGTRLYPGRTDIKPGEITPLLPWTHMHDVISGGEEFRIRLIGTILSDTFGDGNMRGEPISVLPPGVF-ARVKQGIERVIEARAPV 348
            +F R EL+D    WK  +G +  P ++D KP  +   LP  ++ D+I GG ++R+RLIGT L+   G  +M G  IS +P   +  R+    + V+  RAPV
Sbjct:   26 QFTR-ELYDL---WKELKGEQEMPSKSDFKPERMKAYLPNLYIVDIIDGGADYRLRLIGTALTQMVGR-DMTGHLISAVPETQWRGRI---YDTVVRERAPV 119          
BLAST of mRNA_P-wetherbeei_contig14814.1.1 vs. uniprot
Match: UPI001FF3FA0F (PAS domain-containing protein n=1 Tax=Kordiimonas sp. A6E486 TaxID=2872312 RepID=UPI001FF3FA0F)

HSP 1 Score: 56.6 bits (135), Expect = 1.840e-7
Identity = 29/66 (43.94%), Postives = 34/66 (51.52%), Query Frame = 1
Query:   52 VRPELHDFLSYWKAKRGTR-LYPGRTDIKPGEITPLLPWTHMHDVISGGEEFRIRLIGTILSDTFG 246
              P L   L +W  KR  R   PGR DI P  I PLLP+  + DV  GG  FR RL GT + +  G
Sbjct:   36 THPVLKALLDFWTLKRDARGALPGRADISPSTIKPLLPYIALADVEDGGNNFRFRLFGTRIVEDSG 101          
BLAST of mRNA_P-wetherbeei_contig14814.1.1 vs. uniprot
Match: A0A2G4YRY9_9PROT (PAS domain-containing protein n=1 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YRY9_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 3.600e-7
Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 1
Query:   61 ELHDFLSYWKAKRGTRLYPGRTDIKPGEITPLLPWTHMHDVISGGEEFRIRLIGTILSDTFGDGNMRGEPISVLPPGVFARVKQGIERVIEARA 342
            EL    +YW AK+G R+ P R+DI+P EI  LLP   + DV      +R+RL+GT +    G   M G+ +  + P      +  + +++E +A
Sbjct:   25 ELRALYNYWCAKKGDRVMPSRSDIRPAEIVDLLPKVGLIDVEHAPRRYRLRLLGTEVVLALGQ-EMTGKYLDEISPSGSGMAR--LNKLVEHKA 115          
BLAST of mRNA_P-wetherbeei_contig14814.1.1 vs. uniprot
Match: UPI00082F961F (PAS domain-containing protein n=1 Tax=Kordiimonas lipolytica TaxID=1662421 RepID=UPI00082F961F)

HSP 1 Score: 52.8 bits (125), Expect = 4.840e-6
Identity = 19/54 (35.19%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   85 WKAKRGTRLYPGRTDIKPGEITPLLPWTHMHDVISGGEEFRIRLIGTILSDTFG 246
            W+ K+G R +P ++D+ P  +   LP+ ++ D++ GG+++RIRL+G+ ++D  G
Sbjct:   37 WREKKGDREFPLKSDLHPSLMARYLPYIYIVDILDGGKDYRIRLLGSSVADMLG 90          
BLAST of mRNA_P-wetherbeei_contig14814.1.1 vs. uniprot
Match: A0A2G4YU93_9PROT (Uncharacterized protein n=2 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YU93_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 4.650e-5
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1
Query:   64 LHDFLSYWKAKRGTRLYPGRTDIKPGEITPLLPWTHMHDVISGGEEFRIRLIGTILSDTFG 246
            L     YW +K+G RL P R+D+KP E   LLP   + DV      +R RL+GT + +  G
Sbjct:   20 LKKVFQYWSSKKGDRLMPSRSDLKPEEFHRLLPQVVLVDVEMDPVRYRARLVGTKVVEAIG 80          
BLAST of mRNA_P-wetherbeei_contig14814.1.1 vs. uniprot
Match: UPI00036ABCC3 (PAS domain-containing protein n=1 Tax=Neomegalonema perideroedes TaxID=217219 RepID=UPI00036ABCC3)

HSP 1 Score: 50.4 bits (119), Expect = 7.370e-5
Identity = 35/92 (38.04%), Postives = 46/92 (50.00%), Query Frame = 1
Query:   58 PELHDFLSYWKAKRGTRLYPGRTDIKPGEITPLLPWTHMHDVISGGEEFRIRLIGTILSDTFGDGNMRGEPISVLPPGVF-ARVKQGIERVI 330
            P+      YW A R  RL PGR ++ P EI PLL  T + +V    +  R RL GT L + FG   +RG     L  G   A+V+  I RV+
Sbjct:    4 PKTRALYDYWNALRDGRLAPGRNEVDPREIAPLLDSTFILEV-QNADNIRFRLAGTRLCEAFGM-ELRGMSALALWHGEDRAKVRDLILRVV 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14814.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A3C0TRJ0_9PROT1.310e-3462.22Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A1G6VIA3_9PROT1.500e-736.27PAS domain-containing protein n=2 Tax=Kordiimonas ... [more]
UPI001FF3FA0F1.840e-743.94PAS domain-containing protein n=1 Tax=Kordiimonas ... [more]
A0A2G4YRY9_9PROT3.600e-732.98PAS domain-containing protein n=1 Tax=Paremcibacte... [more]
UPI00082F961F4.840e-635.19PAS domain-containing protein n=1 Tax=Kordiimonas ... [more]
A0A2G4YU93_9PROT4.650e-539.34Uncharacterized protein n=2 Tax=Paremcibacter cong... [more]
UPI00036ABCC37.370e-538.04PAS domain-containing protein n=1 Tax=Neomegalonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14814contigP-wetherbeei_contig14814:1..351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380391.JIAS01000013_gene3329
PFAMsPAS_5
Model size351
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.3e-09
EggNOG OGsCOG5388@1|root,COG5388@2|Bacteria,1NFX7@1224|Proteobacteria,2UGRY@28211|Alphaproteobacteria,2JU1H@204441|Rhodospirillales
DescriptionPAS domain
Cds size351
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.2617002-CDS-P-wetherbeei_contig14814:0..3511683186034.2617002-CDS-P-wetherbeei_contig14814:0..351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14814 1..351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14814.1.1prot_P-wetherbeei_contig14814.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14814 1..351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14814.1.1

>prot_P-wetherbeei_contig14814.1.1 ID=prot_P-wetherbeei_contig14814.1.1|Name=mRNA_P-wetherbeei_contig14814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MPATKDNTFICNTDLKFVRPELHDFLSYWKAKRGTRLYPGRTDIKPGEIT
PLLPWTHMHDVISGGEEFRIRLIGTILSDTFGDGNMRGEPISVLPPGVFA
RVKQGIERVIEARAPVR
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mRNA from alignment at P-wetherbeei_contig14814:1..351-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14814.1.1 ID=mRNA_P-wetherbeei_contig14814.1.1|Name=mRNA_P-wetherbeei_contig14814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig14814:1..351- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGCAACAAAAGACAATACCTTCATCTGCAATACTGATCTGAAATT TGTCCGCCCAGAATTGCATGATTTTCTGTCTTACTGGAAAGCCAAGCGCG GTACGCGGCTGTACCCCGGCCGGACGGACATTAAACCAGGCGAAATTACT CCCCTGCTGCCCTGGACACATATGCACGATGTGATCAGCGGCGGGGAAGA ATTTCGTATCCGGCTAATCGGCACGATATTGTCCGACACATTTGGTGACG GCAATATGCGGGGAGAGCCCATTTCTGTACTGCCGCCGGGGGTCTTTGCC CGCGTAAAACAGGGAATTGAACGGGTAATAGAAGCGCGCGCGCCAGTACG C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14814:1..351-

>mRNA_P-wetherbeei_contig14814.1.1 ID=mRNA_P-wetherbeei_contig14814.1.1|Name=mRNA_P-wetherbeei_contig14814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig14814:1..351- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGCAACAAAAGACAATACCTTCATCTGCAATACTGATCTGAAATT
TGTCCGCCCAGAATTGCATGATTTTCTGTCTTACTGGAAAGCCAAGCGCG
GTACGCGGCTGTACCCCGGCCGGACGGACATTAAACCAGGCGAAATTACT
CCCCTGCTGCCCTGGACACATATGCACGATGTGATCAGCGGCGGGGAAGA
ATTTCGTATCCGGCTAATCGGCACGATATTGTCCGACACATTTGGTGACG
GCAATATGCGGGGAGAGCCCATTTCTGTACTGCCGCCGGGGGTCTTTGCC
CGCGTAAAACAGGGAATTGAACGGGTAATAGAAGCGCGCGCGCCAGTACG
C
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