mRNA_P-wetherbeei_contig14812.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14812.1.1
Unique NamemRNA_P-wetherbeei_contig14812.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: D7FSM3_ECTSI (ABC1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM3_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.340e-42
Identity = 83/145 (57.24%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 LDPMGDPVVTDALKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRLGDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQVPYLILDRLVGRFEQALELTDEDRQSLRALRRLVQILLSATTREGAPQNPLTAGAAAR 435
            +DP  DPVV DAL+LLFAKEGNYVQDLVVEE+ARMTDALGRE NLE ++++RR  DG+  P+P      RP+ +  +  NPLLLP+Q+PYL+++R++ R E  L+L+DED+++LRA  RLV I   AT      +NPLTAGAA R
Sbjct:  720 IDPASDPVVMDALRLLFAKEGNYVQDLVVEELARMTDALGREVNLEVLQVLRRFADGVMEPIPLSNLSFRPSPDGHL--NPLLLPIQLPYLMVERIITRVESVLKLSDEDKETLRATERLVDIFRRATVSTSGAKNPLTAGAAER 862          
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: A0A836C852_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C852_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.340e-32
Identity = 79/136 (58.09%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    4 DPMGDPVVTDALKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRLGDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQ----------VPYLILDRLVGRFEQALELTDEDRQSLRALRRLVQILLSA 381
            DP+ DPV  DA+KLLF KEGNY  DLVV+E+ARMTDALGRE NLEAVR +RRLG G   P+P P    + +  A    NPL LP+Q          +PYL+LD +VGR E ALEL  +DRQSLRALRR++ IL SA
Sbjct:  803 DPLEDPVALDAIKLLFNKEGNY--DLVVDELARMTDALGRELNLEAVRALRRLGRGALGPIPLPA--FKSSALAPEGLNPLFLPVQXXXXXXXXXQLPYLMLDGVVGRVESALELDADDRQSLRALRRIIAILASA 934          
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: A0A6H5KY88_9PHAE (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY88_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.290e-28
Identity = 72/136 (52.94%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    1 LDPMGDPVVTDALKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRLGDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQVPYLI----LDRLVGRFEQALELTDEDRQSLRALRRLVQILLSATTREG 396
            +DP+ DPV  DALKLLF+KEGNYVQ+LVVEE+ RMTDALGREANL+ ++ +R L +   APL  P R+ R         NPLL PLQ+P  +    L R+  R E ALEL+ ED++SL+ALRRL Q+L      +G
Sbjct:  929 VDPIQDPVARDALKLLFSKEGNYVQELVVEELVRMTDALGREANLQIIQALRTLTE---APL-SPARIAR--AXXXXXXNPLLAPLQIPVKVQSFALSRIFNRLEVALELSQEDQESLKALRRLQQLLQGGINNDG 1058          
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: A0A835Z5E1_9STRA (Protein kinase:ABC1 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.030e-21
Identity = 58/127 (45.67%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 LDPMGDPVVTDALKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRLGDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQVPYLILDRLVGRFEQALELTDEDRQSLRALRRLVQILLSA 381
            LD + DPV  DALKLLF+K+GN+VQ+L+VEE+ RMTDALGRE NL+ +R +R   D   +PL                  PL L  ++  L  DR+  R E ALELT +D+++L  LRRLV++   A
Sbjct:  636 LDLLSDPVARDALKLLFSKDGNFVQELIVEELVRMTDALGRETNLQLLRALRGAADAPLSPLGXXXXXXXXXXXXFAA--PLQLVARLQLLAFDRVAARLEVALELTADDQEALSTLRRLVEVFRGA 760          
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: A0A7S2V6P2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6P2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.440e-12
Identity = 54/134 (40.30%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   16 DPVVTDALKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRL-GDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQVPYLILDRLVGRFEQALELTDEDRQSLRALRRLVQILLSATTREGAPQNPL 414
            D    DAL+LLF KEGNYVQDLVVEE+ R+TDA+ R+     + L+R++ G G +A    P R L P+  +A     L L    P +   R   R EQ + LT++D+++L   RRLV +L   T    +   PL
Sbjct:  760 DAAAVDALQLLFNKEGNYVQDLVVEELVRVTDAVTRQGANTGLALLRQIAGQGDSA---LPARTLLPSVLSA-----LFLLRSDPVV---RFAERMEQIIALTEDDKETLETTRRLVDLLRQGTGSSSSELPPL 882          
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: A0A250XKI0_9CHLO (Protein kinase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XKI0_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 7.770e-11
Identity = 51/139 (36.69%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    7 PMGDPVVTDALKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRLGDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQVPYLILDRLVGRFEQALELTDEDRQSLRALRRLVQILLSATTREGAPQNPLTAG 423
            P+ +  + +ALK++FAK+G+Y Q+L+VEE+  + DA+ REA  EA+RL+  LG   A    + +  L P          +LLPL +P  +L  +    E A+ LT EDRQ+L  LR ++  L+  +  +G P +  TAG
Sbjct:  799 PVLNETMREALKVVFAKDGSYAQELIVEELVAVIDAMSREALSEALRLV--LGSATAVTALRSVEALGPL-------RAMLLPLPLPMEMLHSM----EPAVALTKEDRQALNTLRAILD-LMQPSLMQGIP-SVATAG 922          
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: A0A7S4D969_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D969_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 5.440e-9
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   16 DPVVTDALKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRLGDGMAAPLPQ 192
            D    +AL+LLF+K+GNYVQDLVVEE+ R+TDAL R+A +  V  +R L +G A P P+
Sbjct:  750 DAPTLEALQLLFSKDGNYVQDLVVEELVRVTDALTRDAAVTLVATLRALAEGRAPPAPR 808          
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: D8TW53_VOLCA (Protein kinase domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TW53_VOLCA)

HSP 1 Score: 64.7 bits (156), Expect = 7.460e-9
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   19 PVVTDA----LKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRLGDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQVPYLILDRLVGRFEQALELTDEDRQSLRALRRLVQILLSATTREGAPQNPLTAGAAAR 435
            PVV +A    LK++FAK+G+Y Q+L+VEEM    DA+ REA  EA+RL+      + A        LR + EA      +L+PL +P  +L  +      ++ LT EDRQ+L  +R L+ +L  +  R   P    T G A R
Sbjct:  696 PVVNEATREVLKVVFAKDGSYAQELIVEEMVAAVDAMSREALGEALRLVLSSAGAVTA--------LR-SVEALGPLRSMLMPLPLPLEMLSAMAP----SVTLTPEDRQALAMVRTLLDLLQPSIAR--LPDVAATGGRAIR 823          
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: A0A150G4U9_GONPE (Protein kinase domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G4U9_GONPE)

HSP 1 Score: 63.9 bits (154), Expect = 1.380e-8
Identity = 51/143 (35.66%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   19 PVVTDA----LKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRLGDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQVPYLILDRLVGRFEQALELTDEDRQSLRALRRLVQILLSATTREGAPQNPLTAGAAAR 435
            PVV +A    LK++FAK+G+Y Q+L+VEEM    DA+ REA  EA+RL+  L    A    + +  L P          +L+PL +P  +L  +      ++ LT EDRQ+L  +R L+ +L  +  R   P    T G A R
Sbjct:  718 PVVNEATREVLKVVFAKDGSYAQELIVEEMVAAVDAMSREALGEALRLV--LSSAGAVTTLRSVEALGPLRS-------MLMPLPLPLEVLSAMAP----SVALTAEDRQALAMVRTLLDLLQPSMAR--LPDVAATGGRAFR 845          
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Match: A0A836BDD3_9CHLO (Protein kinase domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A836BDD3_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 2.590e-8
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   19 PVVTDA----LKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRRLGDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQVPYLILDRLVGRFEQALELTDEDRQSLRALRRLVQILLSATTR 390
            PVV +A    LK++FAK+G+Y Q+L+VEEM    DA+ REA  EA+RL+      + A        LR + EA      +L+PL +P  +L  +       + LT EDRQ+L  +R L+ +L  + +R
Sbjct:  847 PVVNEATREVLKVVFAKDGSYAQELIVEEMVAAVDAMSREALGEALRLVMSSAGAVTA--------LR-SVEALGPLRSMLMPLPLPLEVLSAMAPN----VTLTAEDRQALAMVRTLLDLLQPSMSR 961          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14812.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FSM3_ECTSI1.340e-4257.24ABC1-like n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A836C852_9STRA2.340e-3258.09Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A6H5KY88_9PHAE3.290e-2852.94ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5E1_9STRA4.030e-2145.67Protein kinase:ABC1 family n=1 Tax=Tribonema minus... [more]
A0A7S2V6P2_9STRA1.440e-1240.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A250XKI0_9CHLO7.770e-1136.69Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A7S4D969_HETAK5.440e-954.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8TW53_VOLCA7.460e-936.36Protein kinase domain-containing protein n=1 Tax=V... [more]
A0A150G4U9_GONPE1.380e-835.66Protein kinase domain-containing protein n=1 Tax=G... [more]
A0A836BDD3_9CHLO2.590e-836.72Protein kinase domain-containing protein n=3 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14812contigP-wetherbeei_contig14812:270..1347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSM3
PFAMsABC1,APH
Model size557
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.52e-41
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
Cds size546
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.198716-CDS-P-wetherbeei_contig14812:269..5631683186034.198716-CDS-P-wetherbeei_contig14812:269..563Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14812 270..563 -
1683186034.2089925-CDS-P-wetherbeei_contig14812:799..9851683186034.2089925-CDS-P-wetherbeei_contig14812:799..985Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14812 800..985 -
1683186034.2186658-CDS-P-wetherbeei_contig14812:1272..13381683186034.2186658-CDS-P-wetherbeei_contig14812:1272..1338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14812 1273..1338 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.2280169-UTR-P-wetherbeei_contig14812:1338..13471683186034.2280169-UTR-P-wetherbeei_contig14812:1338..1347Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14812 1339..1347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14812.1.1prot_P-wetherbeei_contig14812.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14812 270..1338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14812.1.1

>prot_P-wetherbeei_contig14812.1.1 ID=prot_P-wetherbeei_contig14812.1.1|Name=mRNA_P-wetherbeei_contig14812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MGDPVVTDALKLLFAKEGNYVQDLVVEEMARMTDALGREANLEAVRLIRR
LGDGMAAPLPQPIRMLRPATEAAITQNPLLLPLQVPYLILDRLVGRFEQA
LELTDEDRQSLRALRRLVQILLSATTREGAPQNPLTAGAAARAATAAAAT
ATAGATAAAANGDKDDSLLLGTGSELPGLILT
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mRNA from alignment at P-wetherbeei_contig14812:270..1347-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14812.1.1 ID=mRNA_P-wetherbeei_contig14812.1.1|Name=mRNA_P-wetherbeei_contig14812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1078bp|location=Sequence derived from alignment at P-wetherbeei_contig14812:270..1347- (Phaeothamnion wetherbeei SAG_119_79)
CTGGACCCGATGGGCGACCCCGTCGTGACGGACGCCCTCAAGCTGCTCTT CGCCAAGGAGGGCAACTACGTGCAGGTGAGAGAACGATAGAAAGAAGGAA AAAAAGATGGCAGCGATGGCGTGGATTGTGCACCCCGTGTTTTCCTGCGA CTGCGTTGGTAGAACGAGAGCTGGCCGATTATGTCAAACGGAAAGGCGAC AACTGCCGTATCCGATAGCAGACCATCGCAGAAAAGTAGAATAGCATTGT TGAACCAAAGACGCGTGTCCCGATATGCTGCTCGTCTTTACCACCGCCGC CGCCGCTTCTGCGCTCCTATTGCCCTTTTTTTCGCTCCACATTTTTTTCC TTTCTTTCGCAGGACTTGGTGGTGGAGGAGATGGCGCGCATGACGGACGC GCTGGGCCGCGAGGCCAACCTCGAGGCAGTGCGCCTCATCCGGCGGCTTG GCGACGGCATGGCGGCCCCGCTGCCGCAGCCCATCCGCATGCTGCGGCCG GCCACCGAGGCCGCCATCACGCAGAACCCGCTGCTGCTCCCGCTCCAGGT GCGTTCACTGCTTTTTTTTAAGACAGCGGAAGTTTCTGCTGTTTCAGCAA GTTTCAATCAAGCGTGTGTTATTTTGGGTGACATGTTTGGACTCCTGTCT GGCGTTTCAGTAATTCCAGAGAAGCGGATCTTAGAATGCTCCGGCCTTGT CTTTTCGTCCTCACTTTCGGCTGACGAATCCTGCTTGCCACTGCCCCCTA AGCTCGTCCGTATCAAAACCAAATCTGTGGACAGGTCCCGTACCTGATAC TGGACCGCCTGGTAGGGCGCTTCGAGCAAGCGCTCGAGCTCACAGACGAA GACCGCCAGAGCCTCCGCGCCCTCCGCCGCCTCGTCCAGATCCTTCTCTC CGCGACCACCCGCGAGGGCGCCCCCCAGAACCCCCTCACCGCTGGCGCCG CTGCCCGCGCCGCCACTGCCGCCGCTGCCACTGCCACCGCCGGGGCCACC GCCGCCGCGGCGAACGGCGACAAAGATGACAGTTTGCTGCTGGGCACCGG TTCCGAGCTGCCTGGGCTTATCCTCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14812:270..1347-

>mRNA_P-wetherbeei_contig14812.1.1 ID=mRNA_P-wetherbeei_contig14812.1.1|Name=mRNA_P-wetherbeei_contig14812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig14812:270..1347- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGACCCCGTCGTGACGGACGCCCTCAAGCTGCTCTTCGCCAAGGA
GGGCAACTACGTGCAGGACTTGGTGGTGGAGGAGATGGCGCGCATGACGG
ACGCGCTGGGCCGCGAGGCCAACCTCGAGGCAGTGCGCCTCATCCGGCGG
CTTGGCGACGGCATGGCGGCCCCGCTGCCGCAGCCCATCCGCATGCTGCG
GCCGGCCACCGAGGCCGCCATCACGCAGAACCCGCTGCTGCTCCCGCTCC
AGGTCCCGTACCTGATACTGGACCGCCTGGTAGGGCGCTTCGAGCAAGCG
CTCGAGCTCACAGACGAAGACCGCCAGAGCCTCCGCGCCCTCCGCCGCCT
CGTCCAGATCCTTCTCTCCGCGACCACCCGCGAGGGCGCCCCCCAGAACC
CCCTCACCGCTGGCGCCGCTGCCCGCGCCGCCACTGCCGCCGCTGCCACT
GCCACCGCCGGGGCCACCGCCGCCGCGGCGAACGGCGACAAAGATGACAG
TTTGCTGCTGGGCACCGGTTCCGAGCTGCCTGGGCTTATCCTCACG
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