mRNA_P-wetherbeei_contig1481.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1481.4.1
Unique NamemRNA_P-wetherbeei_contig1481.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5KQF5_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF5_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.910e-11
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 3 
Query: 1128 ADCLFQTASFNTPGSTNDWNAWQESSASAAVEASPFGYYAVGDNAYQSTERLMVPYPS-LNSNGSDSDYLAKDAFNFYQSQLRITVERS 1391
            AD  F   S  +PGSTNDW AW  SS + AV   P G++ +GD AY   E+L+ PYP  L   G DS       FNF+ SQLR+ +E+S
Sbjct:  100 ADYRFYAMSATSPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDS-------FNFHLSQLRVKIEQS 181
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BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5KAV1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAV1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.010e-10
Identity = 43/110 (39.09%), Postives = 57/110 (51.82%), Query Frame = 3 
Query: 1065 DGLPPLFALHVQPHFP*GCVIADCLFQTASFNTPGSTNDWNAWQESSASAAVEASPFGYYAVGDNAYQSTERLMVPYPS-LNSNGSDSDYLAKDAFNFYQSQLRITVERS 1391
             G    + ++VQ         AD  F   S  +PGSTNDW AW  SS + AV     G++ +GD AY   E+L+ PYP  L   G DS       FNF+ SQLR+ +E+S
Sbjct:   46 SGSKSAYGINVQ-----ATCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLSAGFHIIGDAAYPIVEKLLTPYPGRLLPPGEDS-------FNFHLSQLRVKIEQS 143
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BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5KNZ9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.580e-10
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 3 
Query: 1065 DGLPPLFALHVQPHFP*GCVIADCLFQTASFNTPGSTNDWNAWQESSASAAVEASPFGYYAVGDNAYQSTERLMVPYPSLNSNGSDSDYLAKDAFNFYQSQLRITVERS 1391
             G    + ++VQ         AD  F   S  +PGSTNDW AW  SS + AV   P G++ +GD AY   E+L+ PYP       +      D+FNF+ SQLR+ +E+S
Sbjct:  241 SGSKSAYGINVQ-----AMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPTGFHIIGDAAYPIGEKLLTPYPGRQLPAGE------DSFNFHLSQLRVKIEQS 338
[Close]
BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5JD50_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD50_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.260e-10
Identity = 44/110 (40.00%), Postives = 58/110 (52.73%), Query Frame = 3 
Query: 1065 DGLPPLFALHVQPHFP*GCVIADCLFQTASFNTPGSTNDWNAWQESSASAAVEASPFGYYAVGDNAYQSTERLMVPYPS-LNSNGSDSDYLAKDAFNFYQSQLRITVERS 1391
             G    + ++VQ         AD  F   S  +PGSTNDW AW  SS + AV   P G++ +GD AY   E+L+ PYP  L   G DS       FNF+ SQLR+ +E+S
Sbjct:  238 SGSKSAYGINVQ-----AMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPTGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDS-------FNFHLSQLRVKIEQS 335
[Close]
BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5JC98_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC98_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.020e-9
Identity = 40/109 (36.70%), Postives = 54/109 (49.54%), Query Frame = 3 
Query: 1065 DGLPPLFALHVQPHFP*GCVIADCLFQTASFNTPGSTNDWNAWQESSASAAVEASPFGYYAVGDNAYQSTERLMVPYPSLNSNGSDSDYLAKDAFNFYQSQLRITVERS 1391
             G    + ++VQ         AD  F   S  +PGSTNDW AW  SS + AV   P G + VGD AY   ++L+ PYP             KD+ NF+  QLR+ +E+S
Sbjct:   40 SGSKSAYGINVQ-----AMCTADYRFCAMSVTSPGSTNDWVAWNRSSLAKAVARLPAGCHIVGDAAYPIGQKLLTPYPERQLAAG------KDSLNFHLGQLRVKIEQS 137
[Close]
BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5K6X9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.030e-9
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 3 
Query: 1161 TPGSTNDWNAWQESSASAAVEASPFGYYAVGDNAYQSTERLMVPYPSLNSNGSDSDYLAKDAFNFYQSQLRITVERS 1391
            +PGSTNDW AW  SS + AV   P G++ +GD AY   E+L+ PYP       +      D+FNF+ SQLR+ +E+S
Sbjct:   77 SPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRQLPAGE------DSFNFHLSQLRVKIEQS 147
[Close]
BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5L3C4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.670e-9
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 3 
Query: 1065 DGLPPLFALHVQPHFP*GCVIADCLFQTASFNTPGSTNDWNAWQESSASAAVEASPFGYYAVGDNAYQSTERLMVPYPS-LNSNGSDSDYLAKDAFNFYQSQLRITVERS 1391
             G    + ++VQ         AD  F   S  +PGSTNDW AW  SS + AV   P G++ +GD AY   E+L+ PYP  L   G DS       FNF+ SQ+R+ +E+S
Sbjct:  278 SGSKSAYGINVQ-----AMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPPGEDS-------FNFHLSQVRVMIEQS 375
[Close]
BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5KJ06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ06_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.430e-9
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:  745 RRLAWQYIRDVAVHERQFKTDYRLSPVHFDHLLQILRPSLELNAKIGDLRG---SFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDIIWRVIDAINS 1041
            +RL W          R ++  YR+    F  L+++LRPSLE+NA  G LR      +  E ++ + LR LAG  Y D+    G++    Y I+W VIDAIN+
Sbjct:   75 KRLPWAQHEADLDKRRGWRRSYRVEEGSFHKLVELLRPSLEVNAFFGALRSPRNDAIAVEVRVAVALRILAGASYWDVLLMFGLSVAVTYQILWEVIDAINN 176
[Close]
BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5K9T7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.510e-9
Identity = 43/110 (39.09%), Postives = 57/110 (51.82%), Query Frame = 3 
Query: 1065 DGLPPLFALHVQPHFP*GCVIADCLFQTASFNTPGSTNDWNAWQESSASAAVEASPFGYYAVGDNAYQSTERLMVPYPS-LNSNGSDSDYLAKDAFNFYQSQLRITVERS 1391
             G    + ++VQ         AD  F   S  +PGSTNDW AW  SS + AV   P G++ +GD AY   E+L+ P P  L   G DS       FNF+ SQLR+ +E+S
Sbjct:  118 SGRKSAYGINVQ-----AMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPSPGRLLPPGEDS-------FNFHLSQLRVKIEQS 215
[Close]
BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Match: A0A6H5KBP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.790e-9
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:  745 RRLAWQYIRDVAVHERQFKTDYRLSPVHFDHLLQILRPSLELNAKIGDLRG---SFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDIIWRVIDAIN 1038
            +RL W            ++  YR+    F  L+++LRPSLE+NA  G LR      +  E ++   LR LAGG Y D+    G+++   +DI+W+VIDAIN
Sbjct:  110 KRLPWAQHEADLDKRHGWRRSYRMEKGSFHKLVELLRPSLEVNAFFGALRSPTNGAIAVEVRVAAALRILAGGSYWDVALMFGLSRAVTFDILWQVIDAIN 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1481.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KQF5_9PHAE5.910e-1146.07DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KAV1_9PHAE2.010e-1039.09DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNZ9_9PHAE3.580e-1037.61DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JD50_9PHAE6.260e-1040.00DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JC98_9PHAE1.020e-936.70DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6X9_9PHAE1.030e-944.16DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L3C4_9PHAE1.670e-939.09DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KJ06_9PHAE3.430e-936.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9T7_9PHAE3.510e-939.09DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KBP1_9PHAE3.790e-936.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1481contigP-wetherbeei_contig1481:5354..7115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI35142
Model size1762
Max annot lvl4792.ETI35142|-
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.13e-11
EggNOG OGs2D2TF@1|root,2SNYB@2759|Eukaryota
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.1129158-UTR-P-wetherbeei_contig1481:5353..59901683186034.1129158-UTR-P-wetherbeei_contig1481:5353..5990Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1481 5354..5990 -
1683186034.131639-UTR-P-wetherbeei_contig1481:6488..71151683186034.131639-UTR-P-wetherbeei_contig1481:6488..7115Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1481 6489..7115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.1224647-CDS-P-wetherbeei_contig1481:5990..64881683186034.1224647-CDS-P-wetherbeei_contig1481:5990..6488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1481 5991..6488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1481.4.1prot_P-wetherbeei_contig1481.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1481 5991..6488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1481.4.1

>prot_P-wetherbeei_contig1481.4.1 ID=prot_P-wetherbeei_contig1481.4.1|Name=mRNA_P-wetherbeei_contig1481.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MDNNKRKREHEDILLFIGGIFVFMLAINFDGTRKCGPARRRLAWQYIRDV
AVHERQFKTDYRLSPVHFDHLLQILRPSLELNAKIGDLRGSFVKPENQLM
ITLRYLAGGRYQDIKNHHGIAKTTFYDIIWRVIDAINSAFAASRLLTACR
RYLLFTCNLTFRRAV*
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mRNA from alignment at P-wetherbeei_contig1481:5354..7115-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1481.4.1 ID=mRNA_P-wetherbeei_contig1481.4.1|Name=mRNA_P-wetherbeei_contig1481.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1762bp|location=Sequence derived from alignment at P-wetherbeei_contig1481:5354..7115- (Phaeothamnion wetherbeei SAG_119_79)
GCCTCCTTTTTCCGTAGTGGCCGTTGTGTAGGAGAGGCTCTCGCAGCGTG
CATGGGTGAGGACTCAGCAGCTACCCCTTTGCCACGACAATATCTCAACT
ACCGCTCTGCCGTTTCAACCCTCTGCCACCAGCGAGCGCTTCTACTTCTA
CTTGGAATGTTGGTGAATTTGTCCTACGCCGCGATTTCCGCTGCGATTAA
ATCTGTGTGTTGGAGCACGTCGGTGTGGTTTTCGGCCGCCTGAATGAAGC
TCTCACCCTCTCTTGACAAACTCGTTTTCCGGCGGCGCAGCTGCGGGATT
ACGAGCAAGCCGTCATCAACAAGCGCTTCTCGGAGTTGCAGGAGGACGAG
GTAGAGGCCCTGCTGCAGGAATTGGAAGACTAGAGCTAAAGCCGCTTTTG
ACAAGAAGGGGCTGGTGAGCGGTGAAGCGGTTGCTGTTTTTGGTGTCAGC
CGAGACTTAGAGCCGTTCCTACGTAGCGTCGGATTTTCGTTTTTTCCCTT
TGAGATAAAAAAGACAAGTTCAGAAACGATGTGATTTCGTTCCTATGGGG
GCCCTTTCCTGTTCCCTTTTCAATCCCTGGAGTGGAACTCTTTTTAAAGA
GGTGGCGTGCTGCACAAAGTTACCACGATGGACAATAATAAGCGGAAGAG
GGAGCACGAGGATATCCTTCTTTTCATTGGGGGTATCTTCGTTTTCATGC
TCGCAATTAATTTCGATGGAACCCGCAAGTGCGGCCCTGCACGGAGGAGG
CTCGCTTGGCAGTACATTCGCGATGTTGCCGTCCACGAGAGGCAGTTTAA
GACGGATTATCGGCTTTCTCCAGTGCACTTTGATCATCTCTTGCAGATTT
TACGGCCGAGCTTGGAGCTCAACGCGAAAATTGGTGATCTTCGGGGGAGC
TTTGTCAAACCTGAGAACCAACTAATGATCACCCTGCGCTACCTAGCCGG
AGGGAGGTATCAAGATATCAAGAACCACCATGGCATCGCCAAGACTACAT
TTTATGACATCATTTGGCGCGTTATTGATGCCATCAACTCAGCTTTTGCT
GCAAGCCGCCTCTTGACGGCCTGCCGCCGTTATTTGCTCTTCACGTGCAA
CCTCACTTTCCGTAGGGCTGTGTGATTGCCGACTGCCTGTTCCAAACCGC
ATCGTTCAACACGCCGGGGAGCACAAACGACTGGAATGCGTGGCAGGAGT
CTTCGGCTAGCGCCGCGGTGGAGGCATCACCGTTCGGCTACTATGCCGTC
GGCGACAACGCCTACCAGTCAACGGAACGGTTAATGGTGCCCTATCCGTC
GCTGAACAGTAACGGCAGCGACTCCGACTACCTGGCGAAAGACGCGTTCA
ACTTTTATCAATCGCAACTTCGCATTACCGTTGAACGCTCATCGGCCTTC
TCGTCGGGCGCTGGGGAATCCTCTGGAGCCCGCTGCGGCTGGATCTGCGC
AACGTGCCGCATGTGCTGTCAGCGCTGCTCCGGCTGCACAACTTTTTGCA
GGTCAGAGGCGATGAGCTCTTAACGCCAGAGCCGGGTAGCGTTGAAGAAA
TGCAGCGGCCGCTGACGCCCGCCGGGCGTGTCAGTGAGCTCTTTGAGACA
CCGAGGTCAGCGGCACGAACGGCAAACCAAAGTGCAATGCGAGAAATGAT
TAAGGGCATCCTGGTGCAGAACGGCGCGGTTCTGCCGGCGCGCAATATCG
CGCGCAATCGGGCGGCGAGCAGAGCGTTGTCTGCTGTAAGGTAAAATGCA
ATCGAACTGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1481:5354..7115-

>mRNA_P-wetherbeei_contig1481.4.1 ID=mRNA_P-wetherbeei_contig1481.4.1|Name=mRNA_P-wetherbeei_contig1481.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig1481:5354..7115- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAATAATAAGCGGAAGAGGGAGCACGAGGATATCCTTCTTTTCAT
TGGGGGTATCTTCGTTTTCATGCTCGCAATTAATTTCGATGGAACCCGCA
AGTGCGGCCCTGCACGGAGGAGGCTCGCTTGGCAGTACATTCGCGATGTT
GCCGTCCACGAGAGGCAGTTTAAGACGGATTATCGGCTTTCTCCAGTGCA
CTTTGATCATCTCTTGCAGATTTTACGGCCGAGCTTGGAGCTCAACGCGA
AAATTGGTGATCTTCGGGGGAGCTTTGTCAAACCTGAGAACCAACTAATG
ATCACCCTGCGCTACCTAGCCGGAGGGAGGTATCAAGATATCAAGAACCA
CCATGGCATCGCCAAGACTACATTTTATGACATCATTTGGCGCGTTATTG
ATGCCATCAACTCAGCTTTTGCTGCAAGCCGCCTCTTGACGGCCTGCCGC
CGTTATTTGCTCTTCACGTGCAACCTCACTTTCCGTAGGGCTGTGTGA
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