mRNA_P-wetherbeei_contig1481.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1481.1.1
Unique NamemRNA_P-wetherbeei_contig1481.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: A0A835YU37_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU37_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.280e-60
Identity = 97/159 (61.01%), Postives = 116/159 (72.96%), Query Frame = 1
Query:    1 TDFVGDRERPFWELSREALVMEGTFQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADV-ADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRFRREGLQQPELLRANVGRLPLQTGVVNAVHAGAALHCWMDLERALLEVH 474
            TDFVGD  +  W+LSR   +MEGTFQSP+ S++YERGWR AF  NGFPG+D EF E   FF+ V     VV+DLSCGSGLMTRRLV+S RY RVI  DLS  MLGE A RF + GL +PE LR +V +LP+Q+G V+ +HAGAALHCW  LE  L EV+
Sbjct:   79 TDFVGDDAKAPWDLSRSERIMEGTFQSPLVSFVYERGWRQAFNANGFPGIDKEFEEVAEFFSPVQGPSSVVMDLSCGSGLMTRRLVKSNRYGRVIAGDLSPSMLGEAAQRFDKAGLTRPEFLRCDVSQLPIQSGSVDGLHAGAALHCWTQLEAGLREVY 237          
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: D7G388_ECTSI (S-adenosyl-L-methionine-dependent methyltransferases-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G388_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 7.340e-58
Identity = 100/161 (62.11%), Postives = 115/161 (71.43%), Query Frame = 1
Query:    1 TDFVGDRE--RPFWELSREALVMEGTFQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADV-ADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRFRREGLQQPELLRANVGRLPLQTGVVNAVHAGAALHCWMDLERALLEVH 474
            T+FV   E  +P W LSR   V EGTFQ+P+ SWLYERGWR  F  NGFPG+D EF  A+ +F+   ADG  V+DLSCGSGLM RRLV S RYSRVIG DLS  ML ETA RFR E L  PEL+R +V RLPL+T  ++ VHAGAALHCW  LE +L EVH
Sbjct:  235 TEFVDFAEPLKPTWSLSRGEAVKEGTFQTPLVSWLYERGWRQGFSANGFPGIDEEFRLASEYFSSTGADGKAVIDLSCGSGLMMRRLVSSGRYSRVIGGDLSPTMLAETARRFREEDLGAPELIRCDVSRLPLKTESLDGVHAGAALHCWSKLEESLSEVH 395          
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: A0A8J6CAS6_DIALT (Methyltransf_25 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAS6_DIALT)

HSP 1 Score: 172 bits (436), Expect = 3.670e-50
Identity = 81/136 (59.56%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   64 EGTFQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADVADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRFRREGLQQPELLRANVGRLPLQTGVVNAVHAGAALHCWMDLERALLEV 471
            +  F++P  SW YERGWR  F  NGFPG+D EF E   FFA VA  GVV+D+SCGSGLMTRRL  S  Y RVIG D S  ML ETA RFR EG+  P+L+R +V  LP+Q+  +NAVHAGAALHCW D ER + E+
Sbjct:  107 QSLFRNPAVSWAYERGWRQNFNANGFPGIDQEFEEVQAFFAPVAQRGVVLDMSCGSGLMTRRLAASGAYRRVIGADYSESMLAETARRFREEGMAVPDLVRCDVAALPVQSASLNAVHAGAALHCWPDAERGVGEI 242          
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: A0A836C9V0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V0_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.010e-47
Identity = 93/162 (57.41%), Postives = 110/162 (67.90%), Query Frame = 1
Query:    4 DFVGDRERPFWELSREALVMEGTFQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADV-ADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRF---RREGLQQP-ELLRANVGRLPLQTGVVNAVHAGAALHCWMDLERALLEVH 474
            DFVG ++ P W+LS EA + EG F  PVTS+LYERGWR  F + G PG++ EF E T FF  V     VV DLSCGSGLMTRRLV S RY R+IG DLSA ML E A R    RR G     + +R +V RLP+ T  V+AVHAGAALHCW+DLE +L EV+
Sbjct:   35 DFVGSQKAP-WQLSGEARLKEGLFMLPVTSFLYERGWRQQFNKFGCPGIETEFDEVTQFFEPVQGPDAVVADLSCGSGLMTRRLVFSNRYGRIIGGDLSAAMLREAARRLSRCRRPGSATTVDWVRLDVSRLPIATESVDAVHAGAALHCWVDLEASLSEVY 195          
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: I2CP90_NANGC (Methyltransf_11 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CP90_NANGC)

HSP 1 Score: 159 bits (401), Expect = 2.970e-44
Identity = 88/174 (50.57%), Postives = 107/174 (61.49%), Query Frame = 1
Query:    4 DFVGDRER---PFWELSREALVMEGTFQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADVADGG----------------VVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRFRREGLQQPELLRANVGRLPLQTGVVNAVHAGAALHCWMDLERALLE 468
            D V   ER   PF+  S  A+V +  F+SP+TS+LYERGWR+ FK  GFPG+D EF +   FFA ++D G                 V+DLSCGSGLM RRL RSR++ RVI  D S  ML ET  RF  E L  PEL+RA+  R P QT  V+A+HAGAALHCW  LE +L E
Sbjct:  145 DLVPVEERMQVPFF--SPSAIVTQELFRSPLTSFLYERGWRDNFKTAGFPGIDEEFRDLEAFFAPLSDAGSESEREGEQQRRSGRGTVIDLSCGSGLMARRLCRSRKWKRVIAADFSESMLRETRRRFLEEKLPVPELVRADASRQPFQTSSVDAIHAGAALHCWPRLEESLRE 316          
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: A0A7S0LPR2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LPR2_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 1.080e-40
Identity = 77/135 (57.04%), Postives = 94/135 (69.63%), Query Frame = 1
Query:   73 FQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADVADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRFRREGL--QQPELLRANVGRLPLQTGVVNAVHAGAALHCWMDLERALLEV 471
            F+SPVTSWLYERGWR  F   GFPG++ E+ E   FFA +A GGVVVD+SCGSGLM+RR++ SRR+ RV+ +D S  ML ET  R     L  Q  EL RA+V  LPLQT  ++A+HAGAALH W  LE  L E+
Sbjct:  118 FRSPVTSWLYERGWRQNFANAGFPGIEREYEEVAEFFAPLA-GGVVVDMSCGSGLMSRRILSSRRFGRVLALDYSETMLRETRRRTIAADLPVQDLELCRADVANLPLQTDSIDAMHAGAALHSWPQLELGLSEI 251          
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: A0A6H5JNE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE8_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.400e-40
Identity = 80/132 (60.61%), Postives = 91/132 (68.94%), Query Frame = 1
Query:    1 TDFVGDRE--RPFWELSREALVMEGTFQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADV-ADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRFRREGLQQPELLRANVGRLP 387
            T+FV   E  +P W LSR   V EG FQ+P+ SWLYERGWR  F  NGFPG+D EF   + +F+   ADG  V+DLSCGSGLM RRLV S RYSRVIG DLS  ML ETA RFR EGL  PEL+R +V R P
Sbjct:  175 TEFVDFAEPLKPTWSLSRGEAVKEGQFQTPLVSWLYERGWRQGFSANGFPGIDEEFRLVSEYFSSTGADGKAVIDLSCGSGLMMRRLVSSGRYSRVIGGDLSPTMLAETARRFREEGLGAPELIR-HVRRQP 305          
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: A0A7S0JAP5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JAP5_9EUKA)

HSP 1 Score: 148 bits (373), Expect = 2.740e-40
Identity = 77/135 (57.04%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   73 FQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADVADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRFRREGL--QQPELLRANVGRLPLQTGVVNAVHAGAALHCWMDLERALLEV 471
            F+SP+TSWLYERGWR  FK  GFPG++ E+ E   FFA +A GGVVVD+SCGSGLM+RRL+R  ++ RV+ +D S  ML ET  R    GL   + EL RA+V  LPLQT  V+A+HAGAALH W  LE  L E+
Sbjct:  113 FRSPITSWLYERGWRQNFKAAGFPGIEREYEEVADFFAPLA-GGVVVDMSCGSGLMSRRLLRGAQFGRVLALDYSEAMLLETRRRADAAGLPLDKLELCRADVAALPLQTNSVDAMHAGAALHSWPRLELGLQEI 246          
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: A0A6U4MM50_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MM50_HEMAN)

HSP 1 Score: 146 bits (369), Expect = 8.330e-40
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = 1
Query:   73 FQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADVADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRFRREGLQQPELLRANVGRLPLQTGVVNAVHAGAALHCWMDLERALLEVH 474
            F++P+ SW+YERGWRN+FKQ GFPG++ EF     FF D A+   V+DLSCGSGLM RR   S RY++VI VD S  MLGE   R   E     +++RA+V ++P     V+A+H+GAALHCW  ++  L EVH
Sbjct:  150 FRTPMVSWMYERGWRNSFKQAGFPGIEKEFELVQEFFEDKANK-TVIDLSCGSGLMVRRFASSERYAKVIAVDFSESMLGEVVKRAEEENCPSFDVVRADVAKMPFADNAVDAIHSGAALHCWPSVQDGLSEVH 282          
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Match: A0A0M0JWJ3_9EUKA (S-adenosylmethionine-dependent methyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JWJ3_9EUKA)

HSP 1 Score: 146 bits (369), Expect = 1.370e-39
Identity = 76/140 (54.29%), Postives = 96/140 (68.57%), Query Frame = 1
Query:   58 VMEGTFQSPVTSWLYERGWRNAFKQNGFPGVDNEFVEATTFFADVADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSAPMLGETALRFRREGLQQPELL--RANVGRLPLQTGVVNAVHAGAALHCWMDLERALLEV 471
            V  G F+SP+T++LYERGWR  FK  GFPG+D EF E   +F   A GGVVVD+SCGSGLMTRRLV+S  Y RV+ +D S  ML ETA R + EG+    L   RA+V  LPL+   ++A+HAGAA+HCW  LE  L ++
Sbjct:  112 VQTGLFRSPLTAFLYERGWRQNFKAAGFPGIDVEFNEVQRWFRPAA-GGVVVDMSCGSGLMTRRLVKSSVYGRVLALDYSEAMLQETARRVQEEGVSTKALTLCRADVAALPLRPTSIDAMHAGAAMHCWPRLEEGLRQI 250          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1481.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU37_9STRA2.280e-6061.01S-adenosyl-L-methionine-dependent methyltransferas... [more]
D7G388_ECTSI7.340e-5862.11S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A8J6CAS6_DIALT3.670e-5059.56Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A836C9V0_9STRA1.010e-4757.41S-adenosyl-L-methionine-dependent methyltransferas... [more]
I2CP90_NANGC2.970e-4450.57Methyltransf_11 domain-containing protein n=3 Tax=... [more]
A0A7S0LPR2_9EUKA1.080e-4057.04Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A6H5JNE8_9PHAE1.400e-4060.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0JAP5_9EUKA2.740e-4057.04Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A6U4MM50_HEMAN8.330e-4050.75Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A0M0JWJ3_9EUKA1.370e-3954.29S-adenosylmethionine-dependent methyltransferase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1481contigP-wetherbeei_contig1481:216..1198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G388
PFAMsMethyltransf_11
Model size483
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0010287,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0080167
Exons3
Evalue1.2e-58
EggNOG OGsCOG2226@1|root,2QPQG@2759|Eukaryota
Descriptionresponse to karrikin
Cds size483
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.0567727-CDS-P-wetherbeei_contig1481:215..4681683186034.0567727-CDS-P-wetherbeei_contig1481:215..468Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1481 216..468 -
1683186034.0726733-CDS-P-wetherbeei_contig1481:747..8571683186034.0726733-CDS-P-wetherbeei_contig1481:747..857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1481 748..857 -
1683186034.084735-CDS-P-wetherbeei_contig1481:1078..11981683186034.084735-CDS-P-wetherbeei_contig1481:1078..1198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1481 1079..1198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1481.1.1prot_P-wetherbeei_contig1481.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1481 216..1198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1481.1.1

>prot_P-wetherbeei_contig1481.1.1 ID=prot_P-wetherbeei_contig1481.1.1|Name=mRNA_P-wetherbeei_contig1481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
TDFVGDRERPFWELSREALVMEGTFQSPVTSWLYERGWRNAFKQNGFPGV
DNEFVEATTFFADVADGGVVVDLSCGSGLMTRRLVRSRRYSRVIGVDLSA
PMLGETALRFRREGLQQPELLRANVGRLPLQTGVVNAVHAGAALHCWMDL
ERALLEVHFLL
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mRNA from alignment at P-wetherbeei_contig1481:216..1198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1481.1.1 ID=mRNA_P-wetherbeei_contig1481.1.1|Name=mRNA_P-wetherbeei_contig1481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=983bp|location=Sequence derived from alignment at P-wetherbeei_contig1481:216..1198- (Phaeothamnion wetherbeei SAG_119_79)
ACCGATTTCGTCGGCGACAGGGAGCGTCCGTTCTGGGAGCTCTCACGAGA GGCGCTGGTCATGGAAGGCACCTTCCAGAGCCCGGTAACGTCATGGTTGT ACGAGCGCGGGTGGCGAAATGTGAGTCAAGGTGAATGTGCGGGTGCTCTC TTGATGCAGGAAACAGGCGAGGCCGTGGATGTAACCCTTCTTTGGCGGAC GATGTTCTTCTTGCCAGTTCCGTCGGACTGCAGGATCATTTTATAAAGAG AGTGATGTTTTTGGTCACTCCGCTGTGCTCATTCTTTGGATGCATTGGCA TCCGCGTCTTCCCATCGTTGGTATTTTGGACGTTTGTCCAGGCGTTTAAA CAAAACGGCTTTCCAGGCGTTGACAACGAGTTTGTCGAGGCCACCACGTT CTTCGCGGACGTTGCCGACGGCGGCGTCGTTGTCGACCTCTCCTGCGGGA GGTACGTTCGACTGGGCCGTTTATTATAGTACCTACGATATTGGGTTCAT GTCTGCAGGAATCCGCCGTACTATGATCCCAACATGTTGACTTTCTGCCG AATGGCAGACTTGCCGTGTTCAATGTGGTCATCTCTTGTAGATGCATGCG CTCCCTCTCGAATAGGGATGGTTCCAGAGATATGCAAGGTTTTGTCGTAT AGCCAGTCCCCTGCGCCAAACGTAATTGCGGCCCATAATTCACCATCGGC GCCTCTTCTTATTCATATTATTCCCCACAGCGGCCTCATGACGCGCCGGC TCGTGCGTAGCAGACGCTACAGCCGCGTCATCGGCGTCGACCTTTCCGCC CCGATGCTCGGCGAGACGGCGCTACGCTTCCGCCGTGAGGGGCTGCAGCA GCCGGAGCTACTGCGGGCCAATGTCGGCCGGCTGCCACTGCAGACGGGTG TGGTGAACGCGGTGCACGCCGGGGCGGCGCTGCACTGCTGGATGGACCTG GAGCGTGCTCTTTTAGAGGTACATTTCCTGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1481:216..1198-

>mRNA_P-wetherbeei_contig1481.1.1 ID=mRNA_P-wetherbeei_contig1481.1.1|Name=mRNA_P-wetherbeei_contig1481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig1481:216..1198- (Phaeothamnion wetherbeei SAG_119_79)
ACCGATTTCGTCGGCGACAGGGAGCGTCCGTTCTGGGAGCTCTCACGAGA
GGCGCTGGTCATGGAAGGCACCTTCCAGAGCCCGGTAACGTCATGGTTGT
ACGAGCGCGGGTGGCGAAATGCGTTTAAACAAAACGGCTTTCCAGGCGTT
GACAACGAGTTTGTCGAGGCCACCACGTTCTTCGCGGACGTTGCCGACGG
CGGCGTCGTTGTCGACCTCTCCTGCGGGAGCGGCCTCATGACGCGCCGGC
TCGTGCGTAGCAGACGCTACAGCCGCGTCATCGGCGTCGACCTTTCCGCC
CCGATGCTCGGCGAGACGGCGCTACGCTTCCGCCGTGAGGGGCTGCAGCA
GCCGGAGCTACTGCGGGCCAATGTCGGCCGGCTGCCACTGCAGACGGGTG
TGGTGAACGCGGTGCACGCCGGGGCGGCGCTGCACTGCTGGATGGACCTG
GAGCGTGCTCTTTTAGAGGTACATTTCCTGCTC
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