mRNA_P-wetherbeei_contig14802.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14802.1.1
Unique NamemRNA_P-wetherbeei_contig14802.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: D8LFF1_ECTSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFF1_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.400e-43
Identity = 72/124 (58.06%), Postives = 89/124 (71.77%), Query Frame = 1 
Query:    1 MNAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLGIPNHVLKE 372
            MN+ FRGAAAQ+      ++H Q VCRLYR SLKLLDSW IDR IF +EATK+RA F+      PDS + K L+R  ++M+  + H DRYI+PYMPSGS +MRNP PPL  C+PLGIP+ VL E
Sbjct:    5 MNSTFRGAAAQFISKQHPITHKQEVCRLYRASLKLLDSWAIDRTIFLEEATKVRASFDEGSKCGPDSARAKALMRGAYKMIDEHVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDEVLAE 128
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: A0A7S2UV98_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV98_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.940e-41
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 1 
Query:    1 MNAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLGIPNHVLKE 372
            MN AFR AAAQY+ VP  L+H+Q VCRLYR+ L+LL SW+ +R++FN EA  +RA+F+  K   P+SGKVK LL++  + +A  AHPD YI PYMP GS++MRNPA PL  C+P GIP  + KE
Sbjct:    1 MNEAFRKAAAQYRSVPEVLTHSQEVCRLYRNGLRLLFSWIGNRQVFNDEAEVLRARFDENKHLNPNSGKVKFLLQDAKKEIADMAHPDPYIAPYMPGGSMFMRNPAIPLEFCYPDGIPEGIHKE 124
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: A0A7S2DAM5_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAM5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.130e-39
Identity = 70/120 (58.33%), Postives = 85/120 (70.83%), Query Frame = 1 
Query:    4 NAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLGIPNHV 363
            NAAF  AA QY+Q  P L+HAQVVCRLYR SLK L SW +DR++F  EA K++A+F A +  + DS    RL++EG E L SY HPD+YI  Y+P GSLYMRNP  PL VC+P GIP  V
Sbjct:    3 NAAFVLAAKQYRQKAPDLTHAQVVCRLYRASLKTLGSWAVDRQVFLTEALKIQAEFRANENLSADSPTTTRLVKEGQEKLFSYTHPDKYIPAYLPGGSLYMRNPPLPLSVCYPDGIPEGV 122
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: A0A835YJC3_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.690e-38
Identity = 66/126 (52.38%), Postives = 83/126 (65.87%), Query Frame = 1 
Query:    1 MNAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLGIPNHVLKEVS 378
            MNA+FR  A +++  P  L+H Q VCRLYR SL+LLDSW +DR +F  EA K+R QF+A       SG+ + L+      L +Y HPDRYI  YMP GSL+MRNPA PL VC+P GIP  V KE+ 
Sbjct:    1 MNASFRAVAERFRMAPESLTHKQEVCRLYRASLRLLDSWAVDRTVFLDEAEKIRDQFDANAALDARSGRARYLIANARASLRTYVHPDRYIPAYMPGGSLFMRNPALPLEVCYPNGIPEDVAKEMG 126
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: A0A484DVB9_BRELC (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVB9_BRELC)

HSP 1 Score: 136 bits (342), Expect = 5.400e-38
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:    1 MNAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLGI 351
            MN  FR    ++  VPP+LSH Q V RLY+ SLK LDSW+IDRR++N+EATK+RA+F+A      DSG+ KRL+RE  E +  Y HPDRYI  YMP GSL+MRN   PL VCFP G+
Sbjct:   46 MNKTFRDVVGRFVGVPPQLSHKQSVQRLYKKSLKTLDSWIIDRRLWNEEATKIRAEFDANANLDADSGQAKRLIREAQEKVEHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGV 162
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: A0A8K1CT02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT02_PYTOL)

HSP 1 Score: 134 bits (337), Expect = 9.700e-38
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = 1 
Query:    1 MNAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLGIPNHVLKEVS 378
            MN  FR   A++     KLSH Q V RLY+ SLK LDSW+IDRR++N+EATK+RA+F   K   P+SG  KRL+RE  E L  Y HPDRY+  YMP G+ +MRN   PL VCFP GIP    +EVS
Sbjct:    7 MNQTFREVVARFANPTEKLSHKQTVTRLYKQSLKTLDSWIIDRRLWNEEATKIRAEFEQNKHLEPNSGLAKRLVREAEEKLEKYTHPDRYVYNYMPGGTRFMRNAPIPLDVCFPDGIPEG--EEVS 130
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: A0A4D9CY03_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY03_9STRA)

HSP 1 Score: 132 bits (331), Expect = 7.000e-37
Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:    4 NAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLGIPNHVLKE 372
            NA+ R AAAQY    P+LSH  +V RLYR SLK L+SW IDR +F  EA K+RA F+A    AP+SGKVK L+R+ HE L  Y+HPD+YI P+MP G+L+MRNP  P  V F   +P  V +E
Sbjct:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEE 125
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: A0A2D4C2N7_PYTIN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2N7_PYTIN)

HSP 1 Score: 132 bits (331), Expect = 8.110e-37
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 1 
Query:   13 FRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLG-IPNHVLKEVS 378
            +R   A+      KLSH Q V RLY+ SLK LDSWVIDRR++N+EATK+RAQF++ K   P+SG VKRL+RE  E L  Y HPDRY+  YMP G+ +MRNP  PL VCFP G IP  V  EVS
Sbjct:   11 YREVVARVANPVEKLSHKQTVTRLYKQSLKTLDSWVIDRRLWNEEATKIRAQFDSHKALDPNSGLVKRLVREAEEKLEKYTHPDRYVFNYMPGGTRFMRNPPIPLDVCFPDGNIPEDV--EVS 131
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: D0NC32_PHYIT (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=20 Tax=Peronosporaceae TaxID=4777 RepID=D0NC32_PHYIT)

HSP 1 Score: 132 bits (331), Expect = 8.860e-37
Identity = 69/122 (56.56%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:    1 MNAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLG-IPNHV 363
            MN  FR    ++   PP+LSH Q V R+Y+ SLK LDSWVIDRR++N+EATK+RA+F+A     P+SG  KRL+RE  E +  Y HPDRYI  YMP GSL+MRN   PL VCFP G IP  V
Sbjct:   10 MNKTFREVVGRFVGAPPQLSHKQKVQRVYKKSLKTLDSWVIDRRLWNEEATKIRAEFDANSKLDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPEDV 131
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BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Match: M4BUQ9_HYAAE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUQ9_HYAAE)

HSP 1 Score: 132 bits (331), Expect = 1.030e-36
Identity = 70/122 (57.38%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:    1 MNAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEATKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSLYMRNPAPPLHVCFPLG-IPNHV 363
            MNA  R    ++    P LSH Q V RLY+ SLK LDSWVIDRR++N+EATK+RAQF++ +   P+SG  KRL+RE  E +  Y HPDRYI  YMP GSLYMRN   PL VCFP G IP+ V
Sbjct:    1 MNATLREVVGRFVGAAPNLSHKQTVQRLYKKSLKTLDSWVIDRRLWNEEATKIRAQFDSNEQLDPNSGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLYMRNAPIPLDVCFPDGEIPDDV 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14802.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFF1_ECTSI1.400e-4358.06NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S2UV98_9STRA7.940e-4156.45NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S2DAM5_9STRA3.130e-3958.33NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A835YJC3_9STRA1.690e-3852.38NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A484DVB9_BRELC5.400e-3857.26NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A8K1CT02_PYTOL9.700e-3854.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9CY03_9STRA7.000e-3754.47NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A2D4C2N7_PYTIN8.110e-3757.72NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
D0NC32_PHYIT8.860e-3756.56NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
M4BUQ9_HYAAE1.030e-3657.38NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14802contigP-wetherbeei_contig14802:1015..1587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFF1
Preferred nameNDUFB9
PFAMsComplex1_LYR
Model size384
Max annot lvl2759|Eukaryota
KEGG koko:K03965,ko:K14777
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00147
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0005975,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007600,GO:0007605,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0050877,GO:0050954,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Exons3
Evalue2.3e-44
EggNOG OGsKOG3466@1|root,KOG3466@2759|Eukaryota
EC3.6.4.13
Descriptionmitochondrial electron transport, NADH to ubiquinone
Cds size384
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186033.988568-CDS-P-wetherbeei_contig14802:1014..10831683186033.988568-CDS-P-wetherbeei_contig14802:1014..1083Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14802 1015..1083 +
1683186034.0011513-CDS-P-wetherbeei_contig14802:1180..12791683186034.0011513-CDS-P-wetherbeei_contig14802:1180..1279Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14802 1181..1279 +
1683186034.0087214-CDS-P-wetherbeei_contig14802:1371..15871683186034.0087214-CDS-P-wetherbeei_contig14802:1371..1587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14802 1372..1587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14802.1.1prot_P-wetherbeei_contig14802.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14802 1015..1587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14802.1.1

>prot_P-wetherbeei_contig14802.1.1 ID=prot_P-wetherbeei_contig14802.1.1|Name=mRNA_P-wetherbeei_contig14802.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MNAAFRGAAAQYQQVPPKLSHAQVVCRLYRHSLKLLDSWVIDRRIFNQEA
TKMRAQFNAAKGEAPDSGKVKRLLREGHEMLASYAHPDRYIKPYMPSGSL
YMRNPAPPLHVCFPLGIPNHVLKEVST*
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mRNA from alignment at P-wetherbeei_contig14802:1015..1587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14802.1.1 ID=mRNA_P-wetherbeei_contig14802.1.1|Name=mRNA_P-wetherbeei_contig14802.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig14802:1015..1587+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGCCGCCTTCCGAGGCGCCGCGGCGCAATATCAGCAGGTTCCGCC
GAAGCTCTCGCATGCACAGGTGAGCGTCGCAGCCTACAAATCTCACTCAG
CCTGGAAAGAAAAGCCCATTGATGAGCGAGCTCGGCGCTGCCCGTCCCTC
TTGTCCCGTTGCGCAGGTCGTATGCAGGTTGTATCGGCATAGTTTAAAGC
TTTTGGACAGCTGGGTCATCGACCGCCGAATTTTCAACCAGGAGGCGACG
AAGATGCGTGCTCAGGTGAACCCTTTTCGATACCACGTGAAGAATGCACG
TCGCGAAAAAGCTGCCGCTCAATTCTGCCTTTCCCGCCCCTCCGTGCGAC
CTGGCAGTTCAACGCGGCGAAGGGCGAGGCTCCCGATAGCGGCAAGGTGA
AGCGGCTCTTGCGAGAGGGACACGAGATGCTGGCGTCGTACGCGCACCCA
GACAGATACATCAAGCCGTACATGCCGTCCGGCTCGCTCTACATGCGCAA
CCCAGCGCCACCGCTACATGTCTGCTTCCCGCTTGGGATTCCCAACCACG
TGCTCAAGGAGGTGAGCACGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14802:1015..1587+

>mRNA_P-wetherbeei_contig14802.1.1 ID=mRNA_P-wetherbeei_contig14802.1.1|Name=mRNA_P-wetherbeei_contig14802.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig14802:1015..1587+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGCCGCCTTCCGAGGCGCCGCGGCGCAATATCAGCAGGTTCCGCC
GAAGCTCTCGCATGCACAGGTCGTATGCAGGTTGTATCGGCATAGTTTAA
AGCTTTTGGACAGCTGGGTCATCGACCGCCGAATTTTCAACCAGGAGGCG
ACGAAGATGCGTGCTCAGTTCAACGCGGCGAAGGGCGAGGCTCCCGATAG
CGGCAAGGTGAAGCGGCTCTTGCGAGAGGGACACGAGATGCTGGCGTCGT
ACGCGCACCCAGACAGATACATCAAGCCGTACATGCCGTCCGGCTCGCTC
TACATGCGCAACCCAGCGCCACCGCTACATGTCTGCTTCCCGCTTGGGAT
TCCCAACCACGTGCTCAAGGAGGTGAGCACGTAG
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