mRNA_P-wetherbeei_contig1480.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1480.1.1
Unique NamemRNA_P-wetherbeei_contig1480.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A835YZE8_9STRA (Cse1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE8_9STRA)

HSP 1 Score: 256 bits (655), Expect = 5.630e-76
Identity = 129/198 (65.15%), Postives = 152/198 (76.77%), Query Frame = 1
Query:   97 ERQPGYPQVLVRLIEQHCAGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDD-KENSMSEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVVLGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFRRTSEAAMAPSNDTARLTTLFEALRLMARIFFSLNWQ 687
            ERQPGYPQ+LV+LIE HC+ T   D+S+RTLGAI+FKNLVKR W  P+D D KEN++   DKA IK  +VH+MC+ PPEVQRQFSEAL IISKHDFP  WP LLPDLV +  S DY VVL VL+TANSI KRFRY FKSD L  EL YVL+H+ APL EL ++TS+A  A +    +L TLFE LRL+ RI+FSLNWQ
Sbjct:    2 ERQPGYPQLLVQLIESHCSRTGAEDKSLRTLGAIMFKNLVKRCWVPPEDGDGKENALGADDKAAIKANMVHMMCIVPPEVQRQFSEALTIISKHDFPHDWPALLPDLVQRMRSNDYGVVLSVLVTANSILKRFRYGFKSDALMMELKYVLEHLAAPLTELLQQTSQAVAAAAGQPQQLATLFECLRLICRIYFSLNWQ 199          
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A6H5L714_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L714_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 3.470e-68
Identity = 126/240 (52.50%), Postives = 162/240 (67.50%), Query Frame = 1
Query:    4 ADLDMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQHCAGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDD-KENSMSEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSA--DYHVVLGVLLTANSIFKRFRYVFKSDELYEELAY-VLKHVQAPLLELFRRTSEAAMAPSNDTARLTTLFEALRLMARIFFSLNWQARRLLFAN 711
            A +++LR  L  TQS D  QR++AE +L   E+QP Y Q LV +IE HCAGTT  D+++RTLGA++FKNLVK  W   DD D KEN ++E DK  IK  IV +MC APPEVQRQF+EAL IISK DFP +W  L+ DLV    ++  DYH + G LL+ANS+ KR+RY FKSD L+ EL + VL H+  PLL LF++T  A     ++   L  + EA+RL+ RIFFSLNWQ    +F N
Sbjct:    6 AQINVLRQALAATQSTDADQRKQAEAFLKSMEQQPTYAQRLVGVIEAHCAGTTVEDKTMRTLGAVVFKNLVKEKWAPEDDGDGKENCLAEADKDTIKANIVPLMCRAPPEVQRQFAEALTIISKVDFPARWANLIEDLVRLMKTSGQDYHSLNGALLSANSVLKRYRYTFKSDALFNELKHIVLPHMAEPLLVLFKQTFVAVEQYKSNKEVLVQVLEAVRLIMRIFFSLNWQDLPEVFEN 245          
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A7S3XPQ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPQ4_HETAK)

HSP 1 Score: 213 bits (542), Expect = 5.220e-60
Identity = 114/231 (49.35%), Postives = 156/231 (67.53%), Query Frame = 1
Query:   13 DMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQHCAGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDDKENSMSEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVVLGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFRRTSEAAM------APSNDTARLTTLFEALRLMARIFFSLNWQ 687
            + + N  Q   SPD  QR++AE++L     Q G+   ++++I+ +CA   P  + +R + A+ FKN VK+ W+ PDDD  E S+ E DKA IK  +V +M   PPEVQRQ SEAL+II+ HDFP KW  LLP L+ +F S D++V+ GVLLTANSI KRFRYVFKSD+LY+EL Y L  +Q PLL LF++ SEA +      +  ++ A++T +   LRLMAR+FFSLNWQ
Sbjct:    3 EQISNAFQAAMSPDAGQRQQAEKFLDSLGSQAGFSIAVLQVIQANCAD--PTKKPLRQIAAVYFKNTVKKKWQ-PDDDSIE-SIPEGDKAQIKTHLVEMMSAVPPEVQRQLSEALSIIAGHDFPAKWGDLLPGLIAKFSSPDFNVIYGVLLTANSIMKRFRYVFKSDQLYQELKYCLDLIQEPLLGLFKKVSEAVVQLTPMTSQGDNKAQVTVMLSLLRLMARLFFSLNWQ 229          
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A4D9CS42_9STRA (Importin N-terminal domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CS42_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.230e-57
Identity = 113/233 (48.50%), Postives = 150/233 (64.38%), Query Frame = 1
Query:   10 LDMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQHCAGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDDKE---NSMSEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVVLGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFR----RTSEAAMAPSNDTARLTTLFEALRLMARIFFSLNWQ 687
            L M+  VL +T S D+ QR+EAE++L K   QPG   +  ++IE H  G    D S+R   A+ FKNLV+  WE+  ++ +     SM+  DK  +K  I+++MC+ P +VQ+Q SEAL IIS HDFP KWP LLP++V +F S D+HV+ GVL +AN+IFKRFRY FKSD L+ +L + L++  APL ELF     R  EAA   +ND  RL    E LRL  RIFFSLNWQ
Sbjct:    8 LAMVPGVLLKTLSADKTQRQEAEQFLKKLYGQPGCAMLFFQIIEMHATGPAEPDISIRQAAAVSFKNLVRTRWESKKEEGEAVDAPSMAHADKDMVKQHILNLMCLVPNDVQKQLSEALTIISSHDFPDKWPGLLPEMVAKFSSQDFHVINGVLRSANAIFKRFRYAFKSDALFAQLLFCLQNFAAPLTELFTWAEARLEEAAK--TNDKPRLLATMETLRLCCRIFFSLNWQ 238          
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A7S2LTB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LTB5_9STRA)

HSP 1 Score: 191 bits (486), Expect = 4.890e-57
Identity = 104/229 (45.41%), Postives = 148/229 (64.63%), Query Frame = 1
Query:   10 LDMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQHCAGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDD---KENSMSEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVVLGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFRRTSEAAMAPSNDTARLTTLFEALRLMARIFFSLNWQ 687
            +D LR VL Q+ SPD   R+ AE  L  ++  PG+   ++RLI  + A   P    VR   A+ FKN+VK+ W APD DD   K+  +   D+  IK  +V +MC  PP++Q Q SE++++I+ HDFP+KW  LLPDL+ +FG+ ++ VV GVLLTANS+FKRFRYV +SD LY ++ YVL+ +Q PL +LF   ++     +N+   LT   EALR + RIF+SLN+Q
Sbjct:    5 VDQLRQVLSQSLSPDVTTRQNAERALLASQTSPGHALTVLRLISSNDAADGP----VRQSAAVHFKNMVKKGW-APDPDDADAKKFLVPTSDRDMIKNNLVELMCTVPPQIQAQCSESISLIASHDFPQKWDNLLPDLISRFGNPNWAVVNGVLLTANSLFKRFRYVQRSDALYADILYVLQRIQEPLTQLFTTITQQLDGYANNIQELTARLEALRSINRIFYSLNYQ 228          
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A2R7WKR5_ONCFA (Importin N-terminal domain-containing protein (Fragment) n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WKR5_ONCFA)

HSP 1 Score: 186 bits (473), Expect = 9.940e-56
Identity = 102/226 (45.13%), Postives = 141/226 (62.39%), Query Frame = 1
Query:    7 DLDMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQHCAGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDDKENSMSEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVVLGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFRRTSEAAMAPSNDTARLTTLFEALRLMARIFFSLNW 684
            +L  L N L QT SPD+  R+ AE +L   E   GYP +L+RLI +  A  T     +R  G+I FKN +KR+W   D    EN M   D+A +K TIV  M +APP +Q+Q SEA+  I + DFP+ WP LLPD+V +F S D+H++ G+L TA+SIFKR+RY FKS EL+EE+ +VL     PL +L   T   A   + +   L TL+ +L L+A+IF+SLN+
Sbjct:    7 NLQTLANYLVQTLSPDRDVRKPAENFLESVEINKGYPLLLLRLINKPDAHLT-----IRVAGSISFKNYIKRNWPIVDG---ENKMDPGDRASVKETIVEAMLIAPPAIQKQLSEAVGTIGRSDFPRDWPNLLPDMVQRFASGDFHIINGILQTAHSIFKRYRYEFKSQELWEEIKFVLDTFAKPLTDLAIATQNLAEQHTGNPEALKTLYSSLMLIAKIFYSLNY 224          
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A482SB25_9ARCH (Importin N-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB25_9ARCH)

HSP 1 Score: 187 bits (474), Expect = 5.400e-55
Identity = 97/229 (42.36%), Postives = 147/229 (64.19%), Query Frame = 1
Query:   10 LDMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQ--HCAGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDDKENSM-SEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVVLGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFRRTSEAAMAPSNDTARLTTLFEALRLMARIFFSLNWQ 687
            L +LR++L    S D   R+ AE Y+   E Q G+P +++ LI++  H    +P D ++R   A+LFKN+VK+ W + +DDD  + + S  DK  IK  +V +M  + P+VQ+Q +EA+++++KHDFP+ W  LLP L+ +  + D  +  GV+LTANSI KRFRYV+KSD+LY EL   L ++Q PLL+ F++        +++ A L  LFE  RL+ R+FFSLNWQ
Sbjct:    8 LGVLRDLLINALSHDNNTRKNAENYIKTQEMQTGFPVLVLTLIQRLIHVPNPSPQDMAIRQSAAVLFKNIVKKHWSSDEDDDNASKLISLSDKEVIKAHLVELMTTSTPDVQKQLAEAVSLVAKHDFPEHWQNLLPQLINKLEAEDITIKKGVMLTANSIMKRFRYVYKSDDLYRELLTCLAYLQEPLLKHFQQNFVLIQQFASNKASLLVLFETQRLICRVFFSLNWQ 236          
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A7S3QDC2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDC2_9STRA)

HSP 1 Score: 198 bits (504), Expect = 8.370e-55
Identity = 106/231 (45.89%), Postives = 158/231 (68.40%), Query Frame = 1
Query:   10 LDMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQHC--AGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDDKEN-SMSEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVVLGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFRRTSEA--AMAPSNDTARLTTLFEALRLMARIFFSLNWQ 687
            ++ L+ VL QT SPD   R+ AE +L  A++ PG+P  +++L+      AG   G  +V    A+ FKN+VK+ W+A ++D  +  ++++ D+  IK  +V +MC APP++Q Q SEA+++I+  DFPKKW  LLP+L+ +F S D ++V GVL TANSIFKRFRY+ +S+ELY ++ YVL+ +QAPLL LF+ T +A  A   +ND  +L  LF++LR M RIF+SLNWQ
Sbjct:    7 IEQLQTVLSQTLSPDAQTRKTAEGHLTAAQKFPGHPLSVLQLMASANGNAGAAVG-LTVLQSAAVHFKNIVKKGWDAENEDGTDGITITDHDRNLIKSHLVELMCTAPPQIQAQCSEAISLIAAVDFPKKWDNLLPELIQKFNSPDPNIVNGVLATANSIFKRFRYINRSEELYADILYVLERIQAPLLTLFKTTGQAVDAYTTANDKQKLVPLFQSLRYMCRIFYSLNWQ 236          
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A7S2UN57_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UN57_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.880e-54
Identity = 109/226 (48.23%), Postives = 151/226 (66.81%), Query Frame = 1
Query:   10 LDMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQHCAGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDDKENSMSEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVVLGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFRRTSEAAMAPSNDTARLTTLFEALRLMARIFFSLNWQ 687
            +D LR+VL +T  PD  +RR AE +L +A++  G+P V+++++    A +   D +VR   A+ FKN+VK++W +  +D  E S+S  D+  IK  +V +MC  PP +Q Q S ++++I+  DFP +W  LLP+LV +F S D  VV GVLLTANSIFKRFRYV KSD L++++ YVL+ VQAPLL LF+ T  A  A  ND  +L   F ALR M RIFFSLNWQ
Sbjct:    7 VDQLRSVLSETLCPDAERRRAAENHLTQAQKVSGHPLVVLQIV----ASSDVADVAVRQAAAVHFKNIVKKAW-STSEDHAEISLSPADRNTIKQHLVELMCTVPPAIQMQCSTSISLIAAVDFPAQWDNLLPELVRKFSSPDPAVVNGVLLTANSIFKRFRYVQKSDALFKDILYVLEKVQAPLLTLFQTTGAAIDAYPNDPKQLEPRFRALRSMCRIFFSLNWQ 227          
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Match: A0A7S2R6J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R6J4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 9.860e-54
Identity = 106/226 (46.90%), Postives = 149/226 (65.93%), Query Frame = 1
Query:   13 DMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQHCAGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDDKENSM-SEQDKAYIKGTIVHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVVLGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFRRTSEAAMAPSNDTARLTTLFEALRLMARIFFSLNWQ 687
            D L+ VL QT SP+   RREAE++L  A+   G+P  ++R+I    A +   D +VR   AI FKN+VK+ W+A  +D  +  + S++D+  IK  +V +MC  PP++Q Q SEA+++I+  DFP KW  LL +LV +F S D ++V GVL+TANSIFKRFRYV ++D+LY ++ YVL+ +QAPLL LF+    A  A   D  +L   F ALR + RIFFSLNWQ
Sbjct:    8 DQLKIVLSQTLSPNAGIRREAEKHLNAAQGTSGHPLEILRII----ASSDAADAAVRQAAAIHFKNVVKKGWDADAEDGTDGIIISQEDRNLIKSHLVELMCTVPPQIQAQCSEAISLIAVVDFPLKWDNLLSELVQKFNSPDPNIVAGVLVTANSIFKRFRYVPRNDDLYRDILYVLERLQAPLLTLFKTIGVATDAYREDVQQLRPRFSALRTICRIFFSLNWQ 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1480.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZE8_9STRA5.630e-7665.15Cse1-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6H5L714_9PHAE3.470e-6852.50Importin N-terminal domain-containing protein n=1 ... [more]
A0A7S3XPQ4_HETAK5.220e-6049.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CS42_9STRA2.230e-5748.50Importin N-terminal domain-containing protein n=3 ... [more]
A0A7S2LTB5_9STRA4.890e-5745.41Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A2R7WKR5_ONCFA9.940e-5645.13Importin N-terminal domain-containing protein (Fra... [more]
A0A482SB25_9ARCH5.400e-5542.36Importin N-terminal domain-containing protein n=1 ... [more]
A0A7S3QDC2_9STRA8.370e-5545.89Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2UN57_9STRA2.880e-5448.23Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2R6J4_9STRA9.860e-5446.90Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1480contigP-wetherbeei_contig1480:193..1146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LF61
Preferred nameCSE1L
PFAMsCAS_CSE1,Cse1,IBN_N
Model size714
Max annot lvl2759|Eukaryota
KEGG koko:K18423
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0005911,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006915,GO:0007589,GO:0008104,GO:0008150,GO:0008219,GO:0008283,GO:0009506,GO:0009987,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0017076,GO:0019001,GO:0030054,GO:0031224,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0050878,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons2
Evalue2.63e-53
EggNOG OGsCOG5657@1|root,KOG1992@2759|Eukaryota
Descriptionnuclear export signal receptor activity
Cds size714
COG categoryD
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186033.8581219-CDS-P-wetherbeei_contig1480:192..3511683186033.8581219-CDS-P-wetherbeei_contig1480:192..351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1480 193..351 -
1683186033.8729935-CDS-P-wetherbeei_contig1480:591..11461683186033.8729935-CDS-P-wetherbeei_contig1480:591..1146Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1480 592..1146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1480.1.1prot_P-wetherbeei_contig1480.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1480 193..1146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1480.1.1

>prot_P-wetherbeei_contig1480.1.1 ID=prot_P-wetherbeei_contig1480.1.1|Name=mRNA_P-wetherbeei_contig1480.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp
MADLDMLRNVLQQTQSPDQAQRREAEEYLGKAERQPGYPQVLVRLIEQHC
AGTTPGDRSVRTLGAILFKNLVKRSWEAPDDDDKENSMSEQDKAYIKGTI
VHIMCVAPPEVQRQFSEALAIISKHDFPKKWPILLPDLVGQFGSADYHVV
LGVLLTANSIFKRFRYVFKSDELYEELAYVLKHVQAPLLELFRRTSEAAM
APSNDTARLTTLFEALRLMARIFFSLNWQARRLLFAN*
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mRNA from alignment at P-wetherbeei_contig1480:193..1146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1480.1.1 ID=mRNA_P-wetherbeei_contig1480.1.1|Name=mRNA_P-wetherbeei_contig1480.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=954bp|location=Sequence derived from alignment at P-wetherbeei_contig1480:193..1146- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGATTTGGACATGCTCCGCAACGTCCTTCAGCAGACGCAGAGCCC GGATCAGGCCCAGCGGCGGGAGGCCGAAGAGTACCTCGGGAAGGCCGAGC GGCAACCCGGCTATCCCCAGGTTCTGGTGCGCCTAATCGAGCAGCACTGC GCCGGCACGACGCCCGGCGACAGGAGCGTGCGGACGCTGGGGGCAATCCT CTTCAAGAACCTCGTGAAGCGCAGCTGGGAGGCGCCGGACGATGATGACA AGGAGAACAGCATGAGCGAGCAGGATAAGGCATACATCAAGGGCACCATT GTGCACATCATGTGTGTCGCGCCGCCGGAGGTACAGCGGCAGTTCTCCGA GGCGCTGGCCATTATCAGCAAGCACGATTTTCCGAAGAAGTGGCCCATCC TCCTACCGGACCTTGTGGGGCAGTTCGGCAGCGCGGACTACCACGTCGTG CTCGGCGTGCTCCTCACCGCCAACTCCATCTTCAAGCGCTTCCGTTACGT TTTCAAGAGCGACGAGCTCTACGAGGAGCTGGCCTACGTCCTCAAGCACG TCCAGGTGAGAGAGGAGCGATGCTGGTTGATTCTTCTTGCGGAAGGGAAG GTTTTTGTTTCCTTGGTTTAGTTTGGAATCCTCTCCATGGCGGCCTCATG GATCGCTGACGCCATCGCTGCCGGGACATCGGCTAGCTTTATCGACAAGC TTTTAAAGCAGTCCTCGAGAAGTTTTCGCGTTAGTATCAATGCCTTTTGC TTTCCCCTTCCCACCATTTCTCCTTCGACGTCCTTGTCGTTGAAGGCGCC GCTGCTGGAGCTGTTCCGGCGGACAAGCGAGGCGGCCATGGCGCCATCGA ACGACACGGCGCGGCTGACGACGCTCTTCGAGGCGCTGCGGCTCATGGCT CGCATCTTCTTCTCCCTCAACTGGCAGGCGCGTCGGCTGCTCTTTGCGAA TTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1480:193..1146-

>mRNA_P-wetherbeei_contig1480.1.1 ID=mRNA_P-wetherbeei_contig1480.1.1|Name=mRNA_P-wetherbeei_contig1480.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig1480:193..1146- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGATTTGGACATGCTCCGCAACGTCCTTCAGCAGACGCAGAGCCC
GGATCAGGCCCAGCGGCGGGAGGCCGAAGAGTACCTCGGGAAGGCCGAGC
GGCAACCCGGCTATCCCCAGGTTCTGGTGCGCCTAATCGAGCAGCACTGC
GCCGGCACGACGCCCGGCGACAGGAGCGTGCGGACGCTGGGGGCAATCCT
CTTCAAGAACCTCGTGAAGCGCAGCTGGGAGGCGCCGGACGATGATGACA
AGGAGAACAGCATGAGCGAGCAGGATAAGGCATACATCAAGGGCACCATT
GTGCACATCATGTGTGTCGCGCCGCCGGAGGTACAGCGGCAGTTCTCCGA
GGCGCTGGCCATTATCAGCAAGCACGATTTTCCGAAGAAGTGGCCCATCC
TCCTACCGGACCTTGTGGGGCAGTTCGGCAGCGCGGACTACCACGTCGTG
CTCGGCGTGCTCCTCACCGCCAACTCCATCTTCAAGCGCTTCCGTTACGT
TTTCAAGAGCGACGAGCTCTACGAGGAGCTGGCCTACGTCCTCAAGCACG
TCCAGGCGCCGCTGCTGGAGCTGTTCCGGCGGACAAGCGAGGCGGCCATG
GCGCCATCGAACGACACGGCGCGGCTGACGACGCTCTTCGAGGCGCTGCG
GCTCATGGCTCGCATCTTCTTCTCCCTCAACTGGCAGGCGCGTCGGCTGC
TCTTTGCGAATTAA
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