mRNA_P-wetherbeei_contig1478.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1478.1.1
Unique NamemRNA_P-wetherbeei_contig1478.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1478.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1478contigP-wetherbeei_contig1478:3825..6256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186033.2896402-CDS-P-wetherbeei_contig1478:3824..38611683186033.2896402-CDS-P-wetherbeei_contig1478:3824..3861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1478 3825..3861 +
1683186033.298367-CDS-P-wetherbeei_contig1478:6122..62561683186033.298367-CDS-P-wetherbeei_contig1478:6122..6256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1478 6123..6256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1478.1.1prot_P-wetherbeei_contig1478.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1478 3825..6256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1478.1.1

>prot_P-wetherbeei_contig1478.1.1 ID=prot_P-wetherbeei_contig1478.1.1|Name=mRNA_P-wetherbeei_contig1478.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
GLPPRAGGSGGASSTFGAATPAEGEAAAATAAAAAGGKNGDGLPTAEAAG
GTNGDDG
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mRNA from alignment at P-wetherbeei_contig1478:3825..6256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1478.1.1 ID=mRNA_P-wetherbeei_contig1478.1.1|Name=mRNA_P-wetherbeei_contig1478.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2432bp|location=Sequence derived from alignment at P-wetherbeei_contig1478:3825..6256+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTTGCCTCCCCGCGCTGGCGGCTCCGGCGGCGCCAGTGCCAGGCCACC
AGTACCAAAGCGGCGGCATGGAGTGGCCGCCGCACCGGTATTCGCGAGCA
ACAGAAAGGGGCGGCGGGATTGCCAGCCACAGCGGCGGCGGCGCAACTGC
CGCAGTAGCGGCGACGGCAACTGCCGCAGCAGCGTCGAAGGCAACTGCCG
CAGCAGCGGCGACGGTGGCGGTGATGGCGGCGGTGATAGCGGCGGCGGCG
GCAACGTCGGCGCCGCTTTCCTCTTACAGCAGCCGTGGCGACGCGGCTAC
TTACAACGAGGACGAGCAGGAAGGAGAAATTGCACAGGATTTGCAAAGTG
TCCAGCTTGCTTTCGCCTTGCTCTACGCCGTCGGGATGATTTACCATAAC
GCAGCGCAGGAAAAGCTGGAGCGGATCGCGGCCGGATACGGCGTTCACGT
CGCCGATTTGGTCTTGCGCAAAAAGGCGCCAAGGGGTGGAGCGCGCCGAC
GATAAACGTTATTGAGGTTTGGGCGCAGCCAGCAAAGAGAAAAAGAAGGT
GGAGCGTTGTGTTGTGAAGGAGGACGCAGGTCGATAGAAGGGTTCAAGGG
CGGGGCGGAAGCAGGAAACGAACAAACTAGCAACAGCTTCCACACACCTG
GATATAATGGGATATTACATACCGGCTATCCTTTCTCAGTGTACGCCCAT
AGGTACCGCGGTCGCTTTTTGACGAGTGCCTTGTCAATTATTGGGTTGCC
GCCGCTCTCCCTGGTGTGATGCTCCTCCGCCTTTATCTATTTCCGCTTCT
CTGCTCCAATCGTTACCGTCCACGCTAGGCCTCACGCCACTGGAGCGCAC
GGCCAGCACATGCTGCTAGCTTTCGTTTCCGTCATTATGGATCCCTCAAG
CGTCCAACAACGCCCGCAGTAGCTCTTCCTCCATTCTCACCATGGCTTCC
TTCTCCCGTTCGATTCCCGCCATCACCTCCGCCAGCACTGTCGCCGTATC
CGCCTCCGTTGCGGGCCCCTGCGGCGCCGGCGACATGCTCGCTCCCGCTG
CTGCATGGCCGCCTTGAGTTGCCGCCGTCCCAGAGGCCCCGGTTGCGGCC
GCCGGCACTCCTACCGCCACCACTGCCGCCGGCGCTGCCGCCGCCGCCGC
CGCCGTCGCCGCCCCTGCCCGTGTCGCCGGCGCTGGCGCCGCCTTCATCG
TCGCTGCCGCAAAGCTGGGCATGTGTGCCACGGCCTGCGGAGTTGTTGTG
CCGCCAGCAGTTGCCGGCGCCTGCGGCGACCTGTGCTGCTGGTTTCGAGC
AAAGTTCGGGGCGCCGCCGCCAAACGCCCACGGGTTGAAAGGAGTCGCCG
TCGGCCGAGGCCCGCTGGGCTGTGCCGATGCGCCGGAAGAACCAATCCCG
AAGGACGGGCCCCAGGGTTCCGGCGCGGGGGACGGCGGCATGGGCACGAA
CGGCTCCACCGCCGAAGTTGCGGATGCCGCTGTAGGCGCCGGCGACGGTG
CCGCCACGGTGCCGACTCCCATCCCTGCTGCCGCCGCCGATGCCGCCGGC
GGCGCCATTGTCGTCGCGCTCCCCCAAACGGCCGACGACATGGCGCCGCC
GGCCAGCATCGCATCAAAAGCGAACCGTTGCAGGACGAAGCGGCTGCTGT
CGTTCAACAGATCCGCTGTCGGTGCCGCCGGTGCCGCCGAAGCCAAAGAC
GCACCGCCATCGCCGTCTGCCCCCACCAGCGCCGCGCCGGACGCGGTCAT
CAACCCGCCGCAGCTGCCGCTGACGCTGGCACTGCCGCTGGCGGCCCTGC
CGCTGGCGGTCGCCGCCCAGGTCAGTCGCAGCGGCTGCAGCGACGATGAT
GCGCCCGAGTTCCAGTCCTGCGGCGGAGTCCCTTTGCTCTCGGAGACGCC
GCCGTCCTCCTCCGTCACCAAAAAAGGTCCTGTCAGCTTGGACTCCCCTT
TGAACAGCGGCGGCGGCTCTGGCGAAGTCGGCGGCGGCGGCAGGCACGGC
AGCGCAGCTGTTGCTGTCACCGGCGCCGCCGCCGGAGCGGAAGGCGCCAA
AGCTTCGGGTGCAGCAGCCGCAGCGGCCGCAGCAGTCGGCAGCGCTTTAG
CCTGGCCAAAGACACCTGCGCTCCCCGCGGCTTTTGCCGCCGTGGGCGGG
CCCGACTTGAACAACGGCGCCCGCTCCTGATTCCGGTCCCCGGCAGCGCA
CCTCGTCTTGGCCTCGGCAGCGTAGAGCGAGCGCATGTGGTCCGTTGTCA
CGGCAATGGTTGGCAGCGGCGCGGGCAGCGGCGTCGGCGCCCCCGCAGGT
AGCACTTTCGGCGCCGCGACCCCGGCCGAAGGAGAAGCAGCAGCGGCGAC
GGCGGCGGCGGCGGCGGGCGGGAAAAATGGCGACGGCCTTCCCACAGCTG
AGGCAGCGGGAGGAACGAATGGAGACGACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1478:3825..6256+

>mRNA_P-wetherbeei_contig1478.1.1 ID=mRNA_P-wetherbeei_contig1478.1.1|Name=mRNA_P-wetherbeei_contig1478.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig1478:3825..6256+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTTGCCTCCCCGCGCTGGCGGCTCCGGCGGCGCCAGTAGCACTTTCGG
CGCCGCGACCCCGGCCGAAGGAGAAGCAGCAGCGGCGACGGCGGCGGCGG
CGGCGGGCGGGAAAAATGGCGACGGCCTTCCCACAGCTGAGGCAGCGGGA
GGAACGAATGGAGACGACGGC
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