mRNA_P-wetherbeei_contig14768.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14768.1.1
Unique NamemRNA_P-wetherbeei_contig14768.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A7X9AEF0_9BURK (Uncharacterized protein n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AEF0_9BURK)

HSP 1 Score: 137 bits (346), Expect = 1.190e-38
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   28 YYTRGSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLPILGSD 315
            Y+T  + +G+L+YAILPFHEAGH +LMPFAP F V AGG++AQ+ LP  FAVYF+WKR E FSA VAL W FASMQ M +YM DARFLLLP+ G D
Sbjct:   74 YFTSPAHFGLLDYAILPFHEAGHLVLMPFAPRFLVAAGGTLAQLGLPLGFAVYFFWKRREPFSACVALLWFFASMQNMGIYMKDARFLLLPLFGGD 169
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A7Z9UDK2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UDK2_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 4.120e-18
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   28 YYTRGSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSA 219
            Y+ +  VYG+ E+AILPFHEAGH+ LMPFAP+  +VAGG+I Q+ +P  FA+YF  K+ E FSA
Sbjct:   71 YFVQARVYGIFEWAILPFHEAGHYFLMPFAPQTLMVAGGTIVQLGMPLGFALYFALKKREFFSA 134
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A351SX45_9DELT (Uncharacterized protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A351SX45_9DELT)

HSP 1 Score: 82.8 bits (203), Expect = 1.080e-17
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   40 GSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLPILGSD 315
            G  +G+L+ A L FHEAGH +  PF  +F    GGS+ Q+ +P   AVYFW     G SAAVAL+W   S+  +A+Y+ADAR + LP++G D
Sbjct:   33 GFFWGILDGANLIFHEAGHILFSPFG-DFMQYLGGSLMQVAIPVTCAVYFWLHEQRG-SAAVALFWAGESLTNVAIYVADARRMELPLIGGD 122
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A7X7SIF2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A7X7SIF2_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 1.120e-16
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   49 YGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLPILGSD 315
            Y  L   IL  HEAGH I MPF  E+ +V GG++ Q+LLPF F  YFW +R +G++AA+   W+  ++   AVY+ DAR   LP+LG D
Sbjct:   45 YVFLRDVILATHEAGHVIFMPFG-EYVMVLGGTLFQVLLPFMFIAYFW-RRRDGYAAAIVSLWLAFALTDAAVYIGDARTRQLPLLGGD 131
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A521QAQ7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A521QAQ7_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 8.930e-16
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   40 GSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLPILGSD 315
            GS+  +++ A L FHEAGH +L+PF  EF    GGS+ Q+ +P   AVYFW  + +  S+AV L+W   S+  +A+Y+ADA+ + LP++G D
Sbjct:   34 GSLLAIVDGANLIFHEAGHILLLPFG-EFLHYLGGSLMQVAIPATCAVYFWLHQ-QRTSSAVTLFWTGESLTNVAIYVADAQRMELPLIGGD 123
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A1F9FGL1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_60_17 TaxID=1797865 RepID=A0A1F9FGL1_9DELT)

HSP 1 Score: 77.0 bits (188), Expect = 1.870e-15
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   40 GSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLPILGSD 315
            G +  +L+ A L FHEAGH IL+PF  EF    GGS+ Q+ +P   A YFW     G SAA AL+W   S+  +A+Y+ADAR + LP++G D
Sbjct:   33 GLLLTILDGANLIFHEAGHIILLPFG-EFVHYLGGSLTQVAIPAICAAYFWLHEQWG-SAASALFWTGESVTNVAIYVADARRMELPLIGGD 122
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A1V5PSA4_9BACT (Uncharacterized protein n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PSA4_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 1.870e-15
Identity = 36/104 (34.62%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    4 ILFFLTPQYYTRGSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLPILGSD 315
            I+  ++  Y T+ + Y +++Y  L FHEAGHF+L     EF  + GG++ Q+ +P  F++YF+ K+ +  +    ++W F +   +++YMADA +  LP+LG D
Sbjct:   21 IMIIISVPYLTQKTPYSLIDYVNLAFHEAGHFVLALQGSEFIHILGGTLGQLFVPCVFSIYFF-KKKDYRAFFFTIFWFFENFINISIYMADAPYQQLPLLGGD 123
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A1F8XBV0_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium GWA2_57_13 TaxID=1797811 RepID=A0A1F8XBV0_9DELT)

HSP 1 Score: 75.5 bits (184), Expect = 7.390e-15
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   40 GSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLPILGSD 315
            G++  VL+ A L FHEAGH +L+ F  +F  + GGS+ Q+++P    VYFW       S+AV L+W   S+  +A+Y+ADAR + LP++G D
Sbjct:   34 GTILAVLDGANLIFHEAGH-VLLTFFGDFLQILGGSLMQVVIPSTCTVYFWLHEQRS-SSAVTLFWTGESITNVAIYVADARRMELPLIGGD 123
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A0T6AAS3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium CSP1-6 TaxID=1640509 RepID=A0A0T6AAS3_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 2.070e-14
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   40 GSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLPILGSD 315
            G + G+L+ A L FHEAGH + + F  EF  + GGS+ Q+ +P     YF  +R    SAA AL+W   S+  +AVY+ADAR L LP+LG D
Sbjct:   34 GIILGILDGANLIFHEAGHVLFLVFG-EFLQILGGSLTQVAIPAMCVAYFALRRQPAASAA-ALFWTGESLTNVAVYVADARRLALPLLGGD 123
[Close]
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Match: A0A7V4PPE2_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4PPE2_9DELT)

HSP 1 Score: 73.6 bits (179), Expect = 3.400e-14
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   40 GSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSIAQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLPILGSD 315
            G +  +++ A L FHEAGH IL+ F  EF    GGS+ Q+ +P   A YFW  R    S+A+AL+W   S+  +A+Y+ADAR + LP++G D
Sbjct:   34 GLLLTIVDGANLIFHEAGHIILLLFG-EFIHYLGGSLMQVAIPATCAAYFWLHRQRA-SSAIALFWTGESITNVAIYVADARRMELPLIGGD 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14768.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AEF0_9BURK1.190e-3866.67Uncharacterized protein n=2 Tax=Burkholderiales ba... [more]
A0A7Z9UDK2_9BACT4.120e-1857.81Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
A0A351SX45_9DELT1.080e-1746.74Uncharacterized protein n=2 Tax=unclassified Delta... [more]
A0A7X7SIF2_9BACT1.120e-1647.19Uncharacterized protein n=1 Tax=Candidatus Cloacim... [more]
A0A521QAQ7_9BACT8.930e-1643.48Uncharacterized protein (Fragment) n=1 Tax=bacteri... [more]
A0A1F9FGL1_9DELT1.870e-1546.74Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1V5PSA4_9BACT1.870e-1534.62Uncharacterized protein n=1 Tax=bacterium ADurb.Bi... [more]
A0A1F8XBV0_9DELT7.390e-1542.39Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A0T6AAS3_9BACT2.070e-1445.65Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A7V4PPE2_9DELT3.400e-1443.48Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14768contigP-wetherbeei_contig14768:5..319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1209072.ALBT01000061_gene1006
Model size315
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-13
EggNOG OGs2DC00@1|root,2ZC4V@2|Bacteria,1RBPR@1224|Proteobacteria,1S2KT@1236|Gammaproteobacteria
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186033.0820715-CDS-P-wetherbeei_contig14768:4..3191683186033.0820715-CDS-P-wetherbeei_contig14768:4..319Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14768 5..319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14768.1.1prot_P-wetherbeei_contig14768.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14768 5..319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14768.1.1

>prot_P-wetherbeei_contig14768.1.1 ID=prot_P-wetherbeei_contig14768.1.1|Name=mRNA_P-wetherbeei_contig14768.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
LILFFLTPQYYTRGSVYGVLEYAILPFHEAGHFILMPFAPEFWVVAGGSI
AQILLPFAFAVYFWWKRGEGFSAAVALYWMFASMQQMAVYMADARFLLLP
ILGSD
back to top

mRNA from alignment at P-wetherbeei_contig14768:5..319-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14768.1.1 ID=mRNA_P-wetherbeei_contig14768.1.1|Name=mRNA_P-wetherbeei_contig14768.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig14768:5..319- (Phaeothamnion wetherbeei SAG_119_79)
CTCATTCTCTTCTTCCTCACGCCTCAATACTACACGCGAGGCAGCGTCTA
CGGCGTCCTTGAGTATGCCATTTTGCCCTTCCACGAGGCCGGTCATTTCA
TTCTGATGCCCTTCGCTCCCGAATTCTGGGTTGTCGCAGGAGGGAGCATC
GCGCAGATCTTGCTGCCCTTCGCGTTTGCGGTGTATTTCTGGTGGAAGCG
AGGCGAGGGATTCTCGGCAGCCGTCGCTCTCTACTGGATGTTCGCTTCGA
TGCAGCAGATGGCGGTTTATATGGCGGACGCGCGCTTTCTTTTGCTTCCC
ATCCTCGGCTCGGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14768:5..319-

>mRNA_P-wetherbeei_contig14768.1.1 ID=mRNA_P-wetherbeei_contig14768.1.1|Name=mRNA_P-wetherbeei_contig14768.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig14768:5..319- (Phaeothamnion wetherbeei SAG_119_79)
CTCATTCTCTTCTTCCTCACGCCTCAATACTACACGCGAGGCAGCGTCTA
CGGCGTCCTTGAGTATGCCATTTTGCCCTTCCACGAGGCCGGTCATTTCA
TTCTGATGCCCTTCGCTCCCGAATTCTGGGTTGTCGCAGGAGGGAGCATC
GCGCAGATCTTGCTGCCCTTCGCGTTTGCGGTGTATTTCTGGTGGAAGCG
AGGCGAGGGATTCTCGGCAGCCGTCGCTCTCTACTGGATGTTCGCTTCGA
TGCAGCAGATGGCGGTTTATATGGCGGACGCGCGCTTTCTTTTGCTTCCC
ATCCTCGGCTCGGAC
back to top