mRNA_P-wetherbeei_contig10391.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10391.2.2
Unique NamemRNA_P-wetherbeei_contig10391.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10391.2.2 vs. uniprot
Match: A0A2D6ZLJ5_9BACT (Uncharacterized protein (Fragment) n=2 Tax=Verrucomicrobia TaxID=74201 RepID=A0A2D6ZLJ5_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 5.330e-5
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 3 
Query:  291 VHAAAETGHANAVRALCKGGFDPDARRPPRQWTALMHACYHGDPAVAEALIDARADVTAVEEDGTTPGELFDAAVGTDARDKVR----AALAARFRKVGVKHIYGHEAARTGNLTRVQWYLDAGGDVNARDSNNYTMLH 695
            +HAA   G    V      G + D R   ++ + L +A  +   A A+ L++A+AD+T  +  G T     D A G   R+ V+    A + +R  +   K I+   AA+ G++  ++ +L AG DVNA++ N+YT LH
Sbjct:    6 LHAAIRKGKTEVVTFALVNGANVDLRSKSKK-SPLHYAAQYNQLAAAKLLVEAKADLTVKDTRGRTA---LDLAQGETKRELVKFLRSAGMKSRDDEAAAKSIF--VAAKIGSVEAIKKHLAAGVDVNAKNKNDYTALH 138
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BLAST of mRNA_P-wetherbeei_contig10391.2.2 vs. uniprot
Match: A0A0L0D6U2_THETB (Ankyrin domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D6U2_THETB)

HSP 1 Score: 56.6 bits (135), Expect = 7.880e-5
Identity = 28/77 (36.36%), Postives = 39/77 (50.65%), Query Frame = 3 
Query:  261 GVRDAERNTPVHAAAETGHANAVRALCKGGFDPDARRPPRQWTALMHACYHGDPAVAEALIDARADVTAVEEDGTTP 491
            G   +     ++ A   G   A+ AL   G DP+A R P  W+AL  A YHG   V   L+DA AD+ A+ +D  +P
Sbjct:    2 GASQSTHENKLYEACMRGDVRAIAALLGKGVDPNAARGPNTWSALHAAAYHGPAEVVNLLLDAGADINALNDDSHSP 78
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10391.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D6ZLJ5_9BACT5.330e-530.94Uncharacterized protein (Fragment) n=2 Tax=Verruco... [more]
A0A0L0D6U2_THETB7.880e-536.36Ankyrin domain-containing protein n=1 Tax=Thecamon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10391contigP-wetherbeei_contig10391:282..2169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G0H9
PFAMsAnk_2,Ank_4
Model size1340
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.37e-07
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-20_002390.1
Descriptionprotein ubiquitination
Cds size1206
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.0803347-CDS-P-wetherbeei_contig10391:281..8931683185867.0803347-CDS-P-wetherbeei_contig10391:281..893Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10391 282..893 -
1683185867.090897-CDS-P-wetherbeei_contig10391:1137..17311683185867.090897-CDS-P-wetherbeei_contig10391:1137..1731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10391 1138..1731 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.0994713-UTR-P-wetherbeei_contig10391:1731..17931683185867.0994713-UTR-P-wetherbeei_contig10391:1731..1793Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10391 1732..1793 -
1683185867.1086197-UTR-P-wetherbeei_contig10391:2097..21691683185867.1086197-UTR-P-wetherbeei_contig10391:2097..2169Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10391 2098..2169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10391.2.2prot_P-wetherbeei_contig10391.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10391 282..1731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10391.2.2

>prot_P-wetherbeei_contig10391.2.2 ID=prot_P-wetherbeei_contig10391.2.2|Name=mRNA_P-wetherbeei_contig10391.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=402bp
MASPDDVRLEEAAVTDEINIFAAARAGDLALIKKYLAEGGDTGVRDAERN
TPVHAAAETGHANAVRALCKGGFDPDARRPPRQWTALMHACYHGDPAVAE
ALIDARADVTAVEEDGTTPGELFDAAVGTDARDKVRAALAARFRKVGVKH
IYGHEAARTGNLTRVQWYLDAGGDVNARDSNNYTMLHWACREGHYNAVAF
LLKRGAEVDSKDGKKWTPLYVASMNGQFDMCKLLMERGAAVNARTHDNRT
PLHGACRFGHHDIVFALLERGAMVDSRDGNDNTPLHWACERGHYDLVREL
VNRGAQTSSRDRHQCTPLHWACMGAEAAPDIAKELVTRGAEVEARDDERR
TALHLAADKGFVSVVKELVIRGADISAQDRGGYTPLHYACAKGHERAVFE
LL
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mRNA from alignment at P-wetherbeei_contig10391:282..2169-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10391.2.2 ID=mRNA_P-wetherbeei_contig10391.2.2|Name=mRNA_P-wetherbeei_contig10391.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1888bp|location=Sequence derived from alignment at P-wetherbeei_contig10391:282..2169- (Phaeothamnion wetherbeei SAG_119_79)
CTTCAGGAAAGACGGGACGAACTATTTCTCAGAAGACTGCTGTCATAGAC
GCATCTGCTGTCCTTGCAGAAGGTGAGCGCGTCAATTCTTTTGAGGTTTG
AGTATCTGTCCATCATAGGAGGGCTCCACACAACAAAGCGCGATGGACTG
GCACTAGAAACGGCAGTAAGGCATGGCTCGCTAACGAAGGCTTAACAAAA
TAGGCTCGCCTTGACTTTGTGGTCGTGAGGCCTTTCTCTCGTTGCATAAT
CAAGACAAGTCCACCAAAATTAATGATTCCGACTACCCCTTTGCTTGCAT
GCAACAGTTGCGCTTGCAATGTTCGAAATATTCGCTCCCCTCGCTCCGTT
TCGCCTCCCTTCTTGCTTCCAAACAGCTCTGCACGTAAGGATACCTTGAA
CTCCAGTGGAGCTTTTCAAAAGTAGTGCACAATTTACAATGGCGTCGCCG
GATGACGTCAGATTAGAGGAAGCGGCGGTGACCGACGAGATTAACATCTT
TGCAGCAGCGCGGGCGGGCGACCTCGCCCTCATCAAGAAATACCTCGCTG
AGGGCGGCGACACCGGTGTCCGGGACGCGGAGCGGAACACACCCGTCCAC
GCGGCTGCCGAAACTGGCCATGCTAATGCCGTTCGAGCCCTGTGTAAGGG
CGGCTTTGACCCAGATGCACGCCGGCCGCCGCGGCAGTGGACCGCCCTGA
TGCATGCCTGCTACCACGGCGACCCGGCCGTTGCGGAGGCGCTGATTGAT
GCACGCGCCGATGTGACCGCCGTGGAGGAGGACGGCACCACGCCCGGCGA
ATTGTTCGACGCCGCCGTTGGCACTGACGCCCGCGACAAGGTACGGGCGG
CGCTGGCGGCACGCTTCCGCAAGGTGGGCGTCAAACACATCTACGGGCAC
GAGGCGGCGCGGACGGGGAACTTGACGCGCGTGCAATGGTACCTGGACGC
TGGCGGCGACGTCAATGCCCGCGACAGCAACAACTACACCATGCTGCACT
GGGCGTGCCGCGAGGGACACTACAACGCCGTGGTATGTTCGACTCTTAAG
CGTTTCTGCCCTTATCGAGTTCCTAAAGAAAATGAAGGGCATGATACTGG
CGTTCTCGCTGTTTAAATGTGCAACTACGAGACCGTTTTCAGCAGATCCA
AATAGAAGACTTCACACATGGTCGGTTTGTACAGAAGCGCCAGCTCTTTC
GCCGTAGGTGCTGATTTGTCCGACTTTTGGGCTTCTTTCTTCGCCTTACC
ATAAATATAAACGGCCTGGTTCCCAGGCGTTCCTGCTGAAGCGCGGAGCC
GAGGTGGATTCGAAGGACGGCAAGAAGTGGACGCCGCTCTACGTGGCCTC
CATGAACGGGCAGTTTGACATGTGCAAGTTGCTGATGGAGCGCGGCGCCG
CTGTCAACGCCCGGACACACGACAACCGGACCCCGCTGCATGGCGCCTGC
CGCTTCGGACACCACGACATCGTCTTTGCTCTGCTGGAGCGCGGTGCAAT
GGTGGATTCACGCGATGGCAACGACAATACGCCGCTGCACTGGGCCTGCG
AGCGGGGCCACTACGATTTGGTGCGAGAGTTGGTGAACCGCGGCGCGCAA
ACCAGCTCACGGGACCGGCACCAGTGCACGCCGCTGCACTGGGCGTGCAT
GGGGGCGGAGGCAGCGCCGGACATCGCGAAGGAGCTGGTGACGCGCGGAG
CGGAGGTAGAAGCGCGGGACGACGAACGGAGGACAGCGCTGCATTTGGCG
GCTGACAAGGGCTTCGTCTCAGTCGTCAAGGAGTTGGTGATACGCGGCGC
CGACATCAGCGCACAGGACCGTGGTGGATACACGCCGTTGCACTATGCTT
GCGCGAAAGGCCACGAGAGGGCCGTCTTTGAGCTGTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10391:282..2169-

>mRNA_P-wetherbeei_contig10391.2.2 ID=mRNA_P-wetherbeei_contig10391.2.2|Name=mRNA_P-wetherbeei_contig10391.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1206bp|location=Sequence derived from alignment at P-wetherbeei_contig10391:282..2169- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCGCCGGATGACGTCAGATTAGAGGAAGCGGCGGTGACCGACGA
GATTAACATCTTTGCAGCAGCGCGGGCGGGCGACCTCGCCCTCATCAAGA
AATACCTCGCTGAGGGCGGCGACACCGGTGTCCGGGACGCGGAGCGGAAC
ACACCCGTCCACGCGGCTGCCGAAACTGGCCATGCTAATGCCGTTCGAGC
CCTGTGTAAGGGCGGCTTTGACCCAGATGCACGCCGGCCGCCGCGGCAGT
GGACCGCCCTGATGCATGCCTGCTACCACGGCGACCCGGCCGTTGCGGAG
GCGCTGATTGATGCACGCGCCGATGTGACCGCCGTGGAGGAGGACGGCAC
CACGCCCGGCGAATTGTTCGACGCCGCCGTTGGCACTGACGCCCGCGACA
AGGTACGGGCGGCGCTGGCGGCACGCTTCCGCAAGGTGGGCGTCAAACAC
ATCTACGGGCACGAGGCGGCGCGGACGGGGAACTTGACGCGCGTGCAATG
GTACCTGGACGCTGGCGGCGACGTCAATGCCCGCGACAGCAACAACTACA
CCATGCTGCACTGGGCGTGCCGCGAGGGACACTACAACGCCGTGGCGTTC
CTGCTGAAGCGCGGAGCCGAGGTGGATTCGAAGGACGGCAAGAAGTGGAC
GCCGCTCTACGTGGCCTCCATGAACGGGCAGTTTGACATGTGCAAGTTGC
TGATGGAGCGCGGCGCCGCTGTCAACGCCCGGACACACGACAACCGGACC
CCGCTGCATGGCGCCTGCCGCTTCGGACACCACGACATCGTCTTTGCTCT
GCTGGAGCGCGGTGCAATGGTGGATTCACGCGATGGCAACGACAATACGC
CGCTGCACTGGGCCTGCGAGCGGGGCCACTACGATTTGGTGCGAGAGTTG
GTGAACCGCGGCGCGCAAACCAGCTCACGGGACCGGCACCAGTGCACGCC
GCTGCACTGGGCGTGCATGGGGGCGGAGGCAGCGCCGGACATCGCGAAGG
AGCTGGTGACGCGCGGAGCGGAGGTAGAAGCGCGGGACGACGAACGGAGG
ACAGCGCTGCATTTGGCGGCTGACAAGGGCTTCGTCTCAGTCGTCAAGGA
GTTGGTGATACGCGGCGCCGACATCAGCGCACAGGACCGTGGTGGATACA
CGCCGTTGCACTATGCTTGCGCGAAAGGCCACGAGAGGGCCGTCTTTGAG
CTGTTG
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