mRNA_P-wetherbeei_contig14747.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14747.1.1
Unique NamemRNA_P-wetherbeei_contig14747.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14747.1.1 vs. uniprot
Match: A0A2K1K3A5_PHYPA (DNA-dependent protein kinase catalytic subunit n=6 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K3A5_PHYPA)

HSP 1 Score: 59.3 bits (142), Expect = 6.650e-6
Identity = 35/114 (30.70%), Postives = 56/114 (49.12%), Query Frame = 1 
Query:  313 KWSWLRQHMPAELAYASLLQGDWGAALQELRLCQERFLERWSSLHVCATAARRQQLQALQRVVELEDLLTFRDRPANLARPAAAVAALLSRWSGQRPSATLDPMPVWTTLLAQR 654
            K  +L      +LA  + +  +W  A   L  C   F  +WS+LH  A  +R Q+++ LQ++VELE+ +TF  +P      A  ++ LLS W  + PS   D +  W  +   R
Sbjct: 3033 KRQFLLNEFSTQLATLAAINKEWDRARFYLGQCHLIFRRQWSALHPFALGSRHQRVRQLQKIVELEEFITFISKPE-----AGELSRLLSGWHKRWPSPNFDDVEAWDDIAQNR 3141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14747.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2K1K3A5_PHYPA6.650e-630.70DNA-dependent protein kinase catalytic subunit n=6... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14747contigP-wetherbeei_contig14747:151..1453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKP6
PFAMsDUF3385,FAT,FATC,NUC194,PI3_PI4_kinase,SMG1
Model size1011
Max annot lvl2759|Eukaryota
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.82e-24
EggNOG OGsCOG5032@1|root,KOG0891@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size1011
COG categoryBDLTU
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.5371375-CDS-P-wetherbeei_contig14747:150..6781683186032.5371375-CDS-P-wetherbeei_contig14747:150..678Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14747 151..678 -
1683186032.5458345-CDS-P-wetherbeei_contig14747:970..14531683186032.5458345-CDS-P-wetherbeei_contig14747:970..1453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14747 971..1453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14747.1.1prot_P-wetherbeei_contig14747.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14747 151..1453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14747.1.1

>prot_P-wetherbeei_contig14747.1.1 ID=prot_P-wetherbeei_contig14747.1.1|Name=mRNA_P-wetherbeei_contig14747.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=337bp
IGTANERLLDAKVEPAWFHPPTRDRYMPYYVWALVHQWKEGDKVAQGRLV
AFLTAARHDRRPIPLDADYWGGIGGAGSIGGGGGGDGAAAAAAAAAAAMQ
ATTTKWSWLRQHMPAELAYASLLQGDWGAALQELRLCQERFLERWSSLHV
CATAARRQQLQALQRVVELEDLLTFRDRPANLARPAAAVAALLSRWSGQR
PSATLDPMPVWTTLLAQREEGLHRLLQEVKPWLPESGAAAAAAQAAADAA
DAAKQAAIKATGPSWEGGGDAGLAAATAAAAVERAATVAAACATAAKEEA
AAELDLAVLAHVGDFMLTSAQAAVRQGVVLVAKGRIR
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mRNA from alignment at P-wetherbeei_contig14747:151..1453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14747.1.1 ID=mRNA_P-wetherbeei_contig14747.1.1|Name=mRNA_P-wetherbeei_contig14747.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1303bp|location=Sequence derived from alignment at P-wetherbeei_contig14747:151..1453- (Phaeothamnion wetherbeei SAG_119_79)
ATTGGGACAGCGAACGAGCGGTTGCTCGACGCCAAAGTGGAGCCAGCGTG
GTTCCACCCGCCGACACGGGACCGCTACATGCCATACTACGTGTGGGCGC
TGGTGCACCAATGGAAAGAGGGCGACAAGGTGGCGCAGGGGCGGCTGGTG
GCGTTCCTGACGGCGGCGCGGCACGACCGCCGGCCGATCCCGCTCGATGC
CGATTACTGGGGCGGCATTGGTGGCGCCGGCAGTATTGGTGGAGGCGGTG
GCGGCGACGGCGCGGCCGCGGCTGCGGCGGCGGCGGCGGCGGCGATGCAG
GCGACAACCACGAAGTGGAGCTGGTTGCGGCAGCACATGCCGGCTGAGCT
GGCGTACGCGTCGCTGCTGCAGGGCGACTGGGGTGCGGCCTTACAGGAGC
TGCGGCTCTGCCAGGAACGCTTCCTGGAGCGGTGGTCCAGCCTGCATGTG
TGCGCCACAGCGGCGCGACGGCAGCAGCTGCAGGTGCGTACGGCATGGTT
TTCGTGCCGAAGGTTTAATTTTCAATCCTTTCCGATCCGTTGCGCGGTTT
GAGAAGCGCCACGGGTTTGTTGCTCTTAATTTTGGCAATATGGGCTTCCG
CGCTTTTAAGTGAGTTTGCCAGACCCGCCTTGATCTTCTGCAAAGGCATG
CCGCCTCCTAACCCTTCTGCACCCCAAGGATCTCTTGCGCGCCGCTGTTG
AAACGGTGCCTTCTAAAATATCCCTCTTGCTTGCTTACTCCCTGTTCTCA
ACCGCAAATCCTATCGCGCGGGCAGGCGCTGCAACGCGTCGTGGAGCTCG
AAGACCTGCTGACCTTCCGCGACCGCCCGGCCAACCTGGCGCGGCCAGCG
GCAGCGGTGGCTGCGCTGCTGTCGCGCTGGAGCGGCCAGCGGCCATCGGC
GACGCTCGACCCGATGCCCGTCTGGACGACACTGCTGGCGCAGCGCGAGG
AAGGGCTCCATCGTCTGCTGCAGGAGGTGAAGCCGTGGCTGCCGGAGTCG
GGCGCGGCAGCGGCGGCGGCTCAGGCGGCGGCGGACGCAGCGGACGCGGC
CAAGCAGGCGGCGATAAAGGCGACGGGACCATCGTGGGAGGGCGGCGGTG
ATGCGGGGTTGGCGGCGGCGACTGCGGCCGCTGCTGTCGAGCGGGCAGCA
ACGGTGGCGGCAGCTTGTGCGACGGCGGCGAAGGAGGAGGCGGCGGCGGA
GCTCGATCTGGCCGTGTTGGCGCACGTCGGGGATTTCATGCTGACGTCGG
CGCAGGCGGCGGTGCGGCAGGGGGTTGTGCTAGTCGCCAAGGGGCGCATC
CGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14747:151..1453-

>mRNA_P-wetherbeei_contig14747.1.1 ID=mRNA_P-wetherbeei_contig14747.1.1|Name=mRNA_P-wetherbeei_contig14747.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1011bp|location=Sequence derived from alignment at P-wetherbeei_contig14747:151..1453- (Phaeothamnion wetherbeei SAG_119_79)
ATTGGGACAGCGAACGAGCGGTTGCTCGACGCCAAAGTGGAGCCAGCGTG
GTTCCACCCGCCGACACGGGACCGCTACATGCCATACTACGTGTGGGCGC
TGGTGCACCAATGGAAAGAGGGCGACAAGGTGGCGCAGGGGCGGCTGGTG
GCGTTCCTGACGGCGGCGCGGCACGACCGCCGGCCGATCCCGCTCGATGC
CGATTACTGGGGCGGCATTGGTGGCGCCGGCAGTATTGGTGGAGGCGGTG
GCGGCGACGGCGCGGCCGCGGCTGCGGCGGCGGCGGCGGCGGCGATGCAG
GCGACAACCACGAAGTGGAGCTGGTTGCGGCAGCACATGCCGGCTGAGCT
GGCGTACGCGTCGCTGCTGCAGGGCGACTGGGGTGCGGCCTTACAGGAGC
TGCGGCTCTGCCAGGAACGCTTCCTGGAGCGGTGGTCCAGCCTGCATGTG
TGCGCCACAGCGGCGCGACGGCAGCAGCTGCAGGCGCTGCAACGCGTCGT
GGAGCTCGAAGACCTGCTGACCTTCCGCGACCGCCCGGCCAACCTGGCGC
GGCCAGCGGCAGCGGTGGCTGCGCTGCTGTCGCGCTGGAGCGGCCAGCGG
CCATCGGCGACGCTCGACCCGATGCCCGTCTGGACGACACTGCTGGCGCA
GCGCGAGGAAGGGCTCCATCGTCTGCTGCAGGAGGTGAAGCCGTGGCTGC
CGGAGTCGGGCGCGGCAGCGGCGGCGGCTCAGGCGGCGGCGGACGCAGCG
GACGCGGCCAAGCAGGCGGCGATAAAGGCGACGGGACCATCGTGGGAGGG
CGGCGGTGATGCGGGGTTGGCGGCGGCGACTGCGGCCGCTGCTGTCGAGC
GGGCAGCAACGGTGGCGGCAGCTTGTGCGACGGCGGCGAAGGAGGAGGCG
GCGGCGGAGCTCGATCTGGCCGTGTTGGCGCACGTCGGGGATTTCATGCT
GACGTCGGCGCAGGCGGCGGTGCGGCAGGGGGTTGTGCTAGTCGCCAAGG
GGCGCATCCGC
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