mRNA_P-wetherbeei_contig14745.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14745.1.1
Unique NamemRNA_P-wetherbeei_contig14745.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: A0A7C4XWM4_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XWM4_9HYPH)

HSP 1 Score: 503 bits (1294), Expect = 1.950e-173
Identity = 281/454 (61.89%), Postives = 335/454 (73.79%), Query Frame = 1
Query:   10 SDTICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAALQSLG-CRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDATAPVWDVPDELADAGL-VETVLNKVDIAPSGLLDAQDTRSTSILRMSAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            +DTICALSSAPG + VAV+R+SGP A   LERM G  P  R A LR IRD           G++ID  +VL + GP S TGED+ E+ +HGGRAV+A VL +LQ+ G CRLA PGEF RRAFENGK+DL   EG+ADLI+AETEAQRRQAV QAGG L++LY+ WRE++I A+AL EAAIDFSDEADVAADA+G+++AIA  LA  I+ HL DG RGEILREGF+VVIAGPPN GKSSLLNALARR+AAIVS E GTTRDVIEVRLDLEGLP++VSDTAG+RA  G VE EGIRRT+ RGR ADL++WV+D  AP W VP +LA     V  VLNK+D+ P+      + ++   + +SA TG GL+ L ER+AQLA  R    +   +TQARHR AL  C  +L   L+      EL AEDLRR A ALGR+TGRVDAE VLDQ+F RFCIGK
Sbjct:    4 TDTICALSSAPGVSAVAVIRISGPNAGVLLERMCGSRPAPRVAALRRIRDGAG--------GEEIDSGLVLWFPGPRSETGEDLAELHVHGGRAVIAAVLRSLQASGLCRLARPGEFTRRAFENGKLDLTAVEGLADLIEAETEAQRRQAVRQAGGALARLYEGWREEVISALALVEAAIDFSDEADVAADAVGRAKAIASRLAAAIEGHLADGHRGEILREGFQVVIAGPPNVGKSSLLNALARREAAIVSAEAGTTRDVIEVRLDLEGLPIVVSDTAGIRATGGHVEREGIRRTIARGRAADLLLWVMDTLAPEWTVPADLAAGSRPVLHVLNKIDLVPAAARHGPEGQAA--VAVSALTGAGLADLSERLAQLARERAGTGESIALTQARHREALACCLENLTSFLSTEAGDVELRAEDLRRGAQALGRLTGRVDAEMVLDQIFKRFCIGK 447          
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: A0A2W4TKA6_9PROT (tRNA modification GTPase MnmE n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TKA6_9PROT)

HSP 1 Score: 501 bits (1289), Expect = 1.080e-172
Identity = 281/452 (62.17%), Postives = 334/452 (73.89%), Query Frame = 1
Query:   16 TICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAALQSL-GCRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDATAPVWDVPDELAD-AGLVETVLNKVDIAPSGLLDAQDTRSTSILRMSAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            TI ALSSAPGRAGVAV+R+SGP A T L+ +A P PE R+A +R +R P        +TG+ +D+A+VL +  P SFTGEDV E+ +HGGRAVV  VL A+  + GCRLAEPGEFARRAFENGK+DL  AEG+ADLIDAETEAQR+QA+ QAGG L+ LYD WR  LI A+AL EAAIDFSDE DV ++   Q+  + RDL   I  HL DGRRGEILREGF VV+AGPPN GKSSLLNALARR+AAIVS E GTTRDVIEVRLDLEGLP++V DTAG+R A GAVE EGIRRTL R READLV+W++DA AP  ++P EL D A     VLNK+D+ P   L      + +I   SA TG+G+  L  RIA+LA  RI+P + P +TQ RHR  LEDC ++L   L  S    EL AEDLR AA+ALGR+TGRVD E+VLD +FGRFCIGK
Sbjct:    6 TIFALSSAPGRAGVAVIRISGPAAGTVLDTLAAPRPEPRSAKIRYLRRP--------ETGEILDQALVLWFPAPRSFTGEDVAELHVHGGRAVVQAVLRAIGDIPGCRLAEPGEFARRAFENGKLDLTMAEGLADLIDAETEAQRKQALRQAGGALANLYDGWRNSLIEALALVEAAIDFSDEGDVGSETYDQAVRVVRDLEAAIRRHLADGRRGEILREGFNVVLAGPPNVGKSSLLNALARREAAIVSEEAGTTRDVIEVRLDLEGLPIVVGDTAGIREATGAVEREGIRRTLARTREADLVLWLMDAIAPDPNLPSELTDLADRTLWVLNKIDLCPDVGLPGVPENAIAI---SALTGQGIDVLTRRIAELARDRIAPTEHPGLTQERHRRNLEDCRKALAAFLEGSPWEVELRAEDLRLAANALGRLTGRVDPEEVLDGIFGRFCIGK 446          
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: A0A6N6T303_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T303_9HYPH)

HSP 1 Score: 482 bits (1241), Expect = 1.990e-165
Identity = 270/452 (59.73%), Postives = 330/452 (73.01%), Query Frame = 1
Query:   16 TICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAALQSLG-CRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDATAPVWDVPDELADAG-LVETVLNKVDIAPSGLLDAQDTRSTSILRMSAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            TI ALSS  GRAGVAV+RV+G  A   L+RMA P P+ R A LR+IR P         T + +D+ +VL + GP S TG+D+ E+ +HGGRAVV  VL A+ ++G CRLAEPGEFARRAFENGK+DL   EG+ADLIDAET AQRRQA+ QA G L++LY  WR++LI A+AL EAAIDFSDEADV+ DAI  +R  A  L   I  HL DG RGEI+REGF+VV+AGPPNAGKSSLLN LARRD AIVS E GTTRDVIEVRLDLEG+PV++SDTAG+R  A  VE EGIRRTL+R + ADLV+W+VDA  PVW +P ELA  G    TVLNK+D+    L + +       LR+SA TG GL AL +R+A++A  RI   + P +TQ RHR  LE CA +L+   + +  + E+AAEDLRRAA +LGR+TG +D EDVLDQ+FGRFCIGK
Sbjct:    6 TIYALSSGHGRAGVAVIRVAGAAAGDVLDRMAAPRPKPRVAGLRSIRHP--------TTAELLDQGLVLWFPGPQSETGQDMAELHVHGGRAVVQGVLHAIGTIGGCRLAEPGEFARRAFENGKLDLTGVEGLADLIDAETAAQRRQALRQADGELARLYGGWRKRLIDALALLEAAIDFSDEADVSRDAIENARREALSLQGVIAAHLDDGHRGEIVREGFQVVLAGPPNAGKSSLLNVLARRDVAIVSEEAGTTRDVIEVRLDLEGVPVVISDTAGIRDTAAPVEKEGIRRTLDRAQRADLVLWLVDAADPVWRLPPELAQLGDRALTVLNKIDLISGSLPEERQDG----LRISAQTGAGLEALTKRLAEVARIRIGDSEAPALTQVRHRQQLEACAAALEAFSSHAFEAAEMAAEDLRRAAQSLGRLTGSIDVEDVLDQIFGRFCIGK 445          
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: A0A2W4MNL7_9PROT (tRNA modification GTPase MnmE n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4MNL7_9PROT)

HSP 1 Score: 480 bits (1236), Expect = 1.180e-164
Identity = 272/452 (60.18%), Postives = 323/452 (71.46%), Query Frame = 1
Query:   16 TICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAALQSL-GCRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDATAPVWDVPDELAD-AGLVETVLNKVDIAPSGLLDAQDTRSTSILRMSAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            TI ALSSAPGRAGVAV+R+SGP A T L+ MA P P  R A+LR +R P         + + +D+A+VL +  P+SFTGEDV E+ +HGGRAVV  VL AL  + GCR AE GEFARRAFENGK+DL  AEG+ADLIDAETEAQR+QA+ QA G L+ LYD WR  LI A+AL EAAIDFSDE DV      ++  + + L   I  HL DG RGEILREGF VV+AGPPN GKSSLLNALARRDAAIVS E GTTRDVIEVRLDLEGLP+IVSDTAG+R AAG VE EGIRRTL R R ADL++W++DATAP   +P ELA+ A     V NK+D+   G     D     +L +SA TG+G+  L  RIA +A  R++P + P +TQ RHR  L +C ++L D L  S    EL AEDLR AA ALGRITGR+D E VLD++FGRFCIGK
Sbjct:    6 TIFALSSAPGRAGVAVLRISGPAAGTVLDEMAAPRPRPRQASLRRLRHPV--------SEESLDQALVLWFPAPASFTGEDVAELHVHGGRAVVHAVLGALAEIPGCRPAEAGEFARRAFENGKLDLTMAEGLADLIDAETEAQRKQALRQAEGALAALYDGWRNSLIEALALVEAAIDFSDEGDVGETTFAKAVPVVQGLEAEIRRHLADGNRGEILREGFHVVLAGPPNVGKSSLLNALARRDAAIVSDEAGTTRDVIEVRLDLEGLPIIVSDTAGIREAAGRVEQEGIRRTLARSRAADLIIWLMDATAPNPHLPPELAELADRTLWVTNKIDLREGGW---PDVLPDDMLAISARTGQGIDELARRIAAIARERLAPSEHPSLTQERHRRNLSECQKALIDFLEGSPWQLELRAEDLRIAARALGRITGRIDPEQVLDEIFGRFCIGK 446          
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: A0A1E4CUL3_9HYPH (tRNA modification GTPase MnmE n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A1E4CUL3_9HYPH)

HSP 1 Score: 474 bits (1219), Expect = 5.100e-162
Identity = 273/456 (59.87%), Postives = 330/456 (72.37%), Query Frame = 1
Query:    7 TSDTICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAALQSL-GCRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDATAPVWDVPDELADAGL-VETVLNKVDIAPSGLLDAQDTRSTSILRMSAGTGEGLSALVERIAQLAG-ARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            T DTI ALSS  GR  +AVVRVSGP A   L+R+A P P+ R A  R +R P        +TG++ D A+VL +AGP++ TGED+ E+ LHGGRAV+A   AAL ++ GCR A  GEFARRAFENGK+DL  AEGI DLIDA+T+AQRRQA+ QA G LSQLY+ WR++LIGA AL E+AIDFSDEADV+  A  Q+ A A  L+  I  HLKDGRRGEI+REGFR+V+AGPPN GKSSL+NALARRD AIVS EPGTTRDV+EVRLDL+G   IV+DTAGLR AAGAVE EGIRR L R  EADLV+W++DATAP+ DVP +L + G  V  +LNK+D A +     +DT S   +  SA TG G+S LV ++ ++   A    +D PVITQ RHR  +E C  +L+   + S   PELAAE LR AA ALGRI GR+D EDVLDQVF RFCIGK
Sbjct:    9 TQDTIFALSSGAGRTALAVVRVSGPAAGIALDRIAAPRPKPRFAAFRKLRHP--------NTGEEFDHALVLWFAGPNTETGEDMCELHLHGGRAVLAGAFAALSAVPGCRPATAGEFARRAFENGKLDLTAAEGIIDLIDADTDAQRRQALQQASGALSQLYERWRQELIGARALMESAIDFSDEADVSESAEKQALAEAARLSAEIGNHLKDGRRGEIVREGFRIVLAGPPNVGKSSLMNALARRDVAIVSDEPGTTRDVLEVRLDLDGYMAIVADTAGLREAAGAVEQEGIRRALNRAEEADLVLWIIDATAPLPDVPTDLRNRGRRVLRILNKIDAASA----RRDTPSDHAI--SARTGTGISELVGKLGRIVHEATDGANDTPVITQLRHRQQIEACLDALRAVSSSSTHGPELAAEQLRIAADALGRIVGRIDPEDVLDQVFARFCIGK 450          
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: A0A7C2QS56_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QS56_9HYPH)

HSP 1 Score: 467 bits (1201), Expect = 2.300e-159
Identity = 273/461 (59.22%), Postives = 326/461 (70.72%), Query Frame = 1
Query:    4 PTSDTICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAALQSL-GCRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDAT-----APVWDV-PDELADAGLVETVLNKVDIAPSGLLDAQDTRSTSILRMSAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            P+ DTI ALSS  GRA VAV+R+SGP A   L+RMAGP P+ R A LR +R P         +G+ +D A+ L +  P+S TGEDV E+ +HGGRAV+A VL  + ++ GCRLAEPGEFARRAFENGK+DL  AEG+ADLIDAET AQRRQA++QAGG L++LY  WR++L+ A AL EAAIDFSDEADVA DA  ++RA A  L   I  HL D  RGE++REGFRVV+AGPPN GKSSLLNALARRD AIVS E GTTRDVIEVRLDLEGLP++VSDTAG+R A G VEAEGIRRTL + R ADLV+W+VDAT     AP  +V PD L        V+NK D+  S +L      + ++   SA TG GL  L  RIA  A AR+  ++ PV+TQARHR  L  C  +L   L       EL AEDLRRAA ALGRITG VD E+VL ++FGRFCIGK
Sbjct:    2 PSQDTIFALSSGHGRAAVAVIRISGPAAGIVLDRMAGPRPKPRRAALRRVRHPA--------SGEALDDALALWFPAPASETGEDVAELQVHGGRAVIAAVLDGIGAIEGCRLAEPGEFARRAFENGKLDLTGAEGLADLIDAETAAQRRQALSQAGGALAELYAGWRQRLLTATALVEAAIDFSDEADVAHDAAAKARAEAAALQAEIHHHLDDDHRGELVREGFRVVLAGPPNVGKSSLLNALARRDVAIVSEEAGTTRDVIEVRLDLEGLPIVVSDTAGIREAPGKVEAEGIRRTLGQARAADLVLWMVDATDLGAPAPALEVRPDRLL------VVVNKYDLLDSKVLQVLPEGAIAV---SALTGFGLDRLTRRIAGFAQARMGGEERPVLTQARHRQQLLRCRAALATFLNSPADELELRAEDLRRAALALGRITGAVDPEEVLGEIFGRFCIGK 445          
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: F8JDU7_HYPSM (tRNA modification GTPase MnmE n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=F8JDU7_HYPSM)

HSP 1 Score: 466 bits (1200), Expect = 3.860e-159
Identity = 267/456 (58.55%), Postives = 321/456 (70.39%), Query Frame = 1
Query:    1 TPTSDTICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAALQSL-GCRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDATAPVWDVPDELADAGLVETVLNKVDIAPSGLLDAQDTRSTSILRMSAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            TP + TI ALSSAPGRAG+AV+R+SGP A+  L+RM  P+P+ R A  RTIR P        +TG+ +DRA+VL +A P S TGEDVVE  +HG RAVVA +L+AL ++  CRLAEPGEFARRAFENGK+DL E EG+ADL+DAET+AQRRQA+AQAGG LS+LYD WR +LI   AL EAAIDFSDE DV+A +  ++R  A  LA+ I  HL DG RGEILR+GFRV + G PNAGKSSLLNALARRDAAIVS E GTTRDVIEVRLDL GLPVIVSDTAG+R AA  VE EGIRR+L   R+ADL++W+ +       +P           + +K D+      ++Q       L +SA T  GL  L+  I++ A   +     PVITQARHR ALE     +   LA+S  S EL AED+RRAA ALGRITGRVD EDVLDQ+F RFCIGK
Sbjct:    7 TPDATTIFALSSAPGRAGIAVIRISGPAAQGVLQRMVAPIPKPRVAAFRTIRHP--------ETGEALDRAVVLWFAAPLSETGEDVVEFQVHGSRAVVAALLSALATMPDCRLAEPGEFARRAFENGKLDLAEVEGLADLVDAETDAQRRQALAQAGGALSKLYDGWRARLIEIAALTEAAIDFSDEGDVSASSFAEARKRAEILAKEIAAHLDDGHRGEILRDGFRVALLGAPNAGKSSLLNALARRDAAIVSAEAGTTRDVIEVRLDLGGLPVIVSDTAGIREAASEVEQEGIRRSLAAARDADLILWLTEKGEKDESIPPLGFSRETSLVIRSKADLPH----ESQMEPDFGDLAISAKTCAGLDRLIAVISERAKQAVGSQTDPVITQARHRQALETALADVTAFLAESPESIELRAEDVRRAAQALGRITGRVDVEDVLDQIFSRFCIGK 450          
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: A0A2S5PDM8_HYPSQ (tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PDM8_HYPSQ)

HSP 1 Score: 467 bits (1201), Expect = 5.030e-159
Identity = 273/466 (58.58%), Postives = 324/466 (69.53%), Query Frame = 1
Query:   16 TICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAALQSL-GCRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDATAPVWDVPDELADAGLVET----------VLNKVDIAPSGLLDAQDTRSTSILRM-----SAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            TI ALSS  GRAGVAV+RVSGP     L  MA PVP  RTA LR +  PG        TG  ID+A+VL + GP+S TGED+ E  +HGG AVVA +LAAL S   CRLAEPGEFARRAFENGKIDL  AEG+ADL+DAETEAQRRQA+ QAGGVL++LYD+WR  LI A AL EAAIDFSDE DV ADA+G++R +  +L + I  HL +GRRGEILR+GF+V + G PNAGKSSL NALA+RDAAIVSPE GTTRD+IEVRLDL GL V+++DTAGLR    AVE EG+RRT +R R ADLV+WVVD  A V       +DA L +T          VL K D+ P      QD  ++  +R+     SA TG+G+  L + IA  A +RI   + P +TQARHR+ LE C  +L+  LA  +   EL AEDLR A  ALGRITGRVD E+VLD VFGRFCIGK
Sbjct:   14 TIFALSSGQGRAGVAVIRVSGPSVPAVLISMASPVPRPRTAGLRLVTAPG--------TGDIIDQALVLFFPGPTSQTGEDIAEFQIHGGPAVVAAMLAALASFPACRLAEPGEFARRAFENGKIDLTAAEGLADLVDAETEAQRRQALRQAGGVLARLYDSWRSSLIEASALVEAAIDFSDERDVFADAVGRARVVVEELRELIAAHLNNGRRGEILRDGFQVALVGAPNAGKSSLFNALAQRDAAIVSPEAGTTRDIIEVRLDLGGLSVVLADTAGLREIGAAVELEGMRRTRDRARRADLVLWVVDG-AEVGSGTSPPSDARLFDTQESPTCEMLVVLTKADLVPRN--KRQDADASEFVRVPDVHVSAVTGQGIDRLEKLIASKASSRIGALEAPALTQARHRSQLEVCHGALERFLAGDLDEAELRAEDLRIAVRALGRITGRVDVEEVLDHVFGRFCIGK 468          
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: A0A6I0EPV3_HYPSQ (tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EPV3_HYPSQ)

HSP 1 Score: 465 bits (1196), Expect = 1.190e-158
Identity = 266/453 (58.72%), Postives = 315/453 (69.54%), Query Frame = 1
Query:   10 SDTICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAAL-QSLGCRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDATAPVWDVPDELADAGLVETVLNKVDIAPSGLLDAQDTRSTSILRMSAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            + TI ALSSAPGRAG+AVVRVSGP A   ++ +A P P  R A LR IRDP         + + ID A+VL +A P + TGED+VE+ LHG  AVV  VLA L +  GCRLAEPGEFARRAF NGK+DL + EG+ADLIDAETEAQR QA+AQ  G LS LY+ WR  L+ A AL EAAIDFSDE DVA DA  ++R I   L   I  HL DG RGEILREGFRVV+AGPPN+GKSSLLNALARR+AAIVS E GTTRDVIEVRLDL+GLPVIVSDTAG+R   GA+E EGIRRTL   READLV+W+ DA+ P    P +++  G       K  +  +  +D     +  +L +S+ TG GL  L++R+A LA  RI     P IT AR R +L+ C R+LQD +       EL AEDLR A HALGRITGRVD EDVL ++FGRFCIGK
Sbjct:    4 AQTIFALSSAPGRAGIAVVRVSGPAAGAVVDILAPPRPVNRIAALRRIRDP--------QSSEIIDEALVLWFAAPRTETGEDMVELHLHGSPAVVKAVLATLGRQPGCRLAEPGEFARRAFNNGKLDLAQVEGLADLIDAETEAQRHQALAQMRGALSDLYEGWRRDLLEASALVEAAIDFSDEGDVAGDAFERARGIVATLHAAIAAHLADGNRGEILREGFRVVLAGPPNSGKSSLLNALARREAAIVSEEAGTTRDVIEVRLDLDGLPVIVSDTAGIREPLGAIEKEGIRRTLAHAREADLVLWLSDASEPPVAPPPDVSARG------GKCFLTLASKIDIPGASAAGMLAISSKTGAGLPELIQRVAGLARERIGDLHAPAITHARQRNSLQVCLRALQDFITLPASEQELRAEDLRIAVHALGRITGRVDVEDVLGEIFGRFCIGK 442          
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Match: UPI00093156DD (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI00093156DD)

HSP 1 Score: 464 bits (1194), Expect = 3.030e-158
Identity = 267/452 (59.07%), Postives = 316/452 (69.91%), Query Frame = 1
Query:   16 TICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRTIRDPGRXXXXXXDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVARVLAALQSL-GCRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRRQAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRAIARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDAAIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLERGREADLVVWVVDATAPVWDVPDELAD-AGLVETVLNKVDIAPSGLLDAQDTRSTSILRMSAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALEDCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGRFCIGK 1365
            TI AL+SA GRAGVAVVRVSGP A   ++ MAGP P++R A  R IR P        ++G+ +DR +V+ +  P SFTGEDV E+ LHGGRAVV  VL AL  + G R+AEPGEFARRAFE+GKIDL E EG+ADLIDAETE QRRQA+AQA G LS LYD WR  L+ A+ L EA +DFSDEAD+ A     + AI   L Q +  HL DG RGEILR+GFRV + GPPNAGKSSLLNA+ARRDAAIVS E GTTRDVIEVRLDL GLPVIVSDTAG R   GA+E EG+RR+LE  + ADLV+W+ +A AP   +P ELA  A     VLNK+D+  +G  +        ++ +S  TG GL  L++R+  +A  RI     PV+TQ RHR  +E C  SL   LA S    EL AEDLRRAA ALGRITGRVD EDVLD +FGRFCIGK
Sbjct:    8 TIFALASAQGRAGVAVVRVSGPGAGRVMDFMAGPRPQSRRAVGRFIRHP--------ESGEKLDRGVVIWFPEPKSFTGEDVAELYLHGGRAVVQAVLGALSLVPGLRMAEPGEFARRAFESGKIDLAEVEGLADLIDAETEGQRRQALAQASGALSDLYDGWRASLVEALGLIEAGLDFSDEADIGAKTFADATAIVAVLHQAMINHLADGHRGEILRDGFRVALTGPPNAGKSSLLNAIARRDAAIVSEEAGTTRDVIEVRLDLGGLPVIVSDTAGFRETQGAIEREGMRRSLEVAKGADLVLWLAEAEAPQTAIPVELAPLADRTLLVLNKIDLLSNG--NGAPALPDDMVPLSVKTGAGLDDLIKRLTVIARERIGHQGEPVLTQVRHRRLVEACRDSLATFLAGSRDEVELRAEDLRRAADALGRITGRVDVEDVLDHIFGRFCIGK 449          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14745.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XWM4_9HYPH1.950e-17361.89tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobi... [more]
A0A2W4TKA6_9PROT1.080e-17262.17tRNA modification GTPase MnmE n=1 Tax=Proteobacter... [more]
A0A6N6T303_9HYPH1.990e-16559.73tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobi... [more]
A0A2W4MNL7_9PROT1.180e-16460.18tRNA modification GTPase MnmE n=1 Tax=Proteobacter... [more]
A0A1E4CUL3_9HYPH5.100e-16259.87tRNA modification GTPase MnmE n=2 Tax=unclassified... [more]
A0A7C2QS56_9HYPH2.300e-15959.22tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobi... [more]
F8JDU7_HYPSM3.860e-15958.55tRNA modification GTPase MnmE n=2 Tax=unclassified... [more]
A0A2S5PDM8_HYPSQ5.030e-15958.58tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobi... [more]
A0A6I0EPV3_HYPSQ1.190e-15858.72tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobi... [more]
UPI00093156DD3.030e-15859.07tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14745contigP-wetherbeei_contig14745:299..1666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog717785.HYPMC_4551
Preferred namemnmE
PFAMsMMR_HSR1,MnmE_helical,TrmE_N
Model size1368
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03650
KEGG ReactionR08701
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.33e-160
EggNOG OGsCOG0486@1|root,COG0486@2|Bacteria,1MUCQ@1224|Proteobacteria,2TQZW@28211|Alphaproteobacteria,3N63E@45401|Hyphomicrobiaceae
DescriptionExhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
Cds size1368
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.489191-CDS-P-wetherbeei_contig14745:298..16661683186032.489191-CDS-P-wetherbeei_contig14745:298..1666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14745 299..1666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14745.1.1prot_P-wetherbeei_contig14745.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14745 299..1666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14745.1.1

>prot_P-wetherbeei_contig14745.1.1 ID=prot_P-wetherbeei_contig14745.1.1|Name=mRNA_P-wetherbeei_contig14745.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=456bp
TPTSDTICALSSAPGRAGVAVVRVSGPLARTCLERMAGPVPEARTATLRT
IRDPGRDPGCDPDTGQDIDRAIVLLYAGPSSFTGEDVVEILLHGGRAVVA
RVLAALQSLGCRLAEPGEFARRAFENGKIDLVEAEGIADLIDAETEAQRR
QAVAQAGGVLSQLYDNWREQLIGAMALAEAAIDFSDEADVAADAIGQSRA
IARDLAQRIDVHLKDGRRGEILREGFRVVIAGPPNAGKSSLLNALARRDA
AIVSPEPGTTRDVIEVRLDLEGLPVIVSDTAGLRAAAGAVEAEGIRRTLE
RGREADLVVWVVDATAPVWDVPDELADAGLVETVLNKVDIAPSGLLDAQD
TRSTSILRMSAGTGEGLSALVERIAQLAGARISPDDGPVITQARHRAALE
DCARSLQDHLAQSVLSPELAAEDLRRAAHALGRITGRVDAEDVLDQVFGR
FCIGK*
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mRNA from alignment at P-wetherbeei_contig14745:299..1666-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14745.1.1 ID=mRNA_P-wetherbeei_contig14745.1.1|Name=mRNA_P-wetherbeei_contig14745.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1368bp|location=Sequence derived from alignment at P-wetherbeei_contig14745:299..1666- (Phaeothamnion wetherbeei SAG_119_79)
ACCCCCACGAGCGACACCATCTGCGCCTTGTCGTCAGCGCCCGGGCGGGC GGGGGTGGCGGTGGTGCGCGTTTCGGGACCGTTGGCGCGGACGTGCCTGG AACGGATGGCGGGCCCGGTTCCCGAGGCCAGAACGGCGACGCTGAGGACT ATTCGCGATCCTGGCCGAGACCCTGGCTGCGACCCTGACACGGGCCAGGA CATCGATCGCGCGATTGTCCTGCTCTATGCAGGACCCTCCTCCTTCACTG GGGAGGATGTCGTCGAGATCCTCCTGCATGGCGGCAGGGCCGTCGTCGCA CGCGTCCTGGCGGCTTTGCAATCGCTGGGATGCCGGTTGGCGGAGCCGGG GGAATTCGCGCGGCGCGCGTTCGAGAACGGCAAGATCGATCTGGTCGAGG CCGAGGGCATCGCGGATCTCATCGATGCGGAGACCGAAGCGCAGCGACGC CAGGCAGTGGCCCAGGCCGGCGGGGTGCTGTCGCAGCTCTACGACAACTG GCGCGAGCAGCTGATCGGCGCGATGGCGCTGGCCGAAGCGGCGATCGATT TCTCTGACGAGGCGGACGTCGCGGCCGATGCCATCGGACAGTCGCGGGCC ATTGCACGCGACCTCGCGCAACGCATCGATGTTCATCTCAAGGATGGCCG TCGCGGGGAGATTTTGCGGGAGGGGTTCCGCGTCGTGATCGCGGGTCCGC CAAACGCGGGCAAGTCGAGCCTCCTCAATGCGCTCGCGCGGCGGGACGCG GCTATCGTCTCGCCGGAGCCGGGCACGACGCGCGACGTGATCGAGGTGAG GCTCGACCTCGAGGGTCTCCCCGTCATCGTCAGCGACACCGCAGGATTGC GGGCGGCGGCCGGGGCCGTCGAGGCAGAGGGAATCCGCCGCACGCTCGAA CGGGGGCGGGAGGCGGACCTCGTCGTCTGGGTCGTGGATGCCACGGCGCC GGTTTGGGACGTGCCCGATGAACTCGCGGATGCCGGTCTCGTCGAGACGG TGCTGAACAAGGTCGATATCGCGCCATCGGGTCTCCTCGACGCGCAGGAC ACTCGCAGTACAAGCATCCTGCGGATGTCGGCTGGCACCGGAGAAGGTCT TTCCGCACTCGTCGAGCGGATCGCGCAACTGGCCGGCGCGCGGATTTCAC CCGATGACGGGCCGGTCATCACCCAGGCCCGCCATCGCGCGGCCCTGGAG GATTGCGCGCGGAGTCTCCAGGACCATCTCGCGCAGAGTGTCCTGTCACC GGAACTGGCAGCGGAAGACCTGCGCCGGGCAGCGCACGCGCTGGGCCGGA TTACCGGCAGGGTCGATGCAGAGGATGTGCTCGACCAGGTGTTCGGGCGC TTCTGCATCGGTAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14745:299..1666-

>mRNA_P-wetherbeei_contig14745.1.1 ID=mRNA_P-wetherbeei_contig14745.1.1|Name=mRNA_P-wetherbeei_contig14745.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1368bp|location=Sequence derived from alignment at P-wetherbeei_contig14745:299..1666- (Phaeothamnion wetherbeei SAG_119_79)
ACCCCCACGAGCGACACCATCTGCGCCTTGTCGTCAGCGCCCGGGCGGGC
GGGGGTGGCGGTGGTGCGCGTTTCGGGACCGTTGGCGCGGACGTGCCTGG
AACGGATGGCGGGCCCGGTTCCCGAGGCCAGAACGGCGACGCTGAGGACT
ATTCGCGATCCTGGCCGAGACCCTGGCTGCGACCCTGACACGGGCCAGGA
CATCGATCGCGCGATTGTCCTGCTCTATGCAGGACCCTCCTCCTTCACTG
GGGAGGATGTCGTCGAGATCCTCCTGCATGGCGGCAGGGCCGTCGTCGCA
CGCGTCCTGGCGGCTTTGCAATCGCTGGGATGCCGGTTGGCGGAGCCGGG
GGAATTCGCGCGGCGCGCGTTCGAGAACGGCAAGATCGATCTGGTCGAGG
CCGAGGGCATCGCGGATCTCATCGATGCGGAGACCGAAGCGCAGCGACGC
CAGGCAGTGGCCCAGGCCGGCGGGGTGCTGTCGCAGCTCTACGACAACTG
GCGCGAGCAGCTGATCGGCGCGATGGCGCTGGCCGAAGCGGCGATCGATT
TCTCTGACGAGGCGGACGTCGCGGCCGATGCCATCGGACAGTCGCGGGCC
ATTGCACGCGACCTCGCGCAACGCATCGATGTTCATCTCAAGGATGGCCG
TCGCGGGGAGATTTTGCGGGAGGGGTTCCGCGTCGTGATCGCGGGTCCGC
CAAACGCGGGCAAGTCGAGCCTCCTCAATGCGCTCGCGCGGCGGGACGCG
GCTATCGTCTCGCCGGAGCCGGGCACGACGCGCGACGTGATCGAGGTGAG
GCTCGACCTCGAGGGTCTCCCCGTCATCGTCAGCGACACCGCAGGATTGC
GGGCGGCGGCCGGGGCCGTCGAGGCAGAGGGAATCCGCCGCACGCTCGAA
CGGGGGCGGGAGGCGGACCTCGTCGTCTGGGTCGTGGATGCCACGGCGCC
GGTTTGGGACGTGCCCGATGAACTCGCGGATGCCGGTCTCGTCGAGACGG
TGCTGAACAAGGTCGATATCGCGCCATCGGGTCTCCTCGACGCGCAGGAC
ACTCGCAGTACAAGCATCCTGCGGATGTCGGCTGGCACCGGAGAAGGTCT
TTCCGCACTCGTCGAGCGGATCGCGCAACTGGCCGGCGCGCGGATTTCAC
CCGATGACGGGCCGGTCATCACCCAGGCCCGCCATCGCGCGGCCCTGGAG
GATTGCGCGCGGAGTCTCCAGGACCATCTCGCGCAGAGTGTCCTGTCACC
GGAACTGGCAGCGGAAGACCTGCGCCGGGCAGCGCACGCGCTGGGCCGGA
TTACCGGCAGGGTCGATGCAGAGGATGTGCTCGACCAGGTGTTCGGGCGC
TTCTGCATCGGTAAATGA
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