mRNA_P-wetherbeei_contig1474.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1474.1.1
Unique NamemRNA_P-wetherbeei_contig1474.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1474.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1474contigP-wetherbeei_contig1474:235..816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size582
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.1300368-UTR-P-wetherbeei_contig1474:234..3461683186032.1300368-UTR-P-wetherbeei_contig1474:234..346Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1474 235..346 -
1683186032.1481924-UTR-P-wetherbeei_contig1474:655..8161683186032.1481924-UTR-P-wetherbeei_contig1474:655..816Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1474 656..816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.1395302-CDS-P-wetherbeei_contig1474:346..6551683186032.1395302-CDS-P-wetherbeei_contig1474:346..655Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1474 347..655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1474.1.1prot_P-wetherbeei_contig1474.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1474 347..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1474.1.1

>prot_P-wetherbeei_contig1474.1.1 ID=prot_P-wetherbeei_contig1474.1.1|Name=mRNA_P-wetherbeei_contig1474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MRKYATSSFAPIFLESDAVGFRCGSESTTALLRSLSWTKQVPSIRFVLHG
RTTPQQMAFAAIPRSFVRSTLARDRSEKPQAHNLKRRMRALSDPSLPYRP
IL*
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mRNA from alignment at P-wetherbeei_contig1474:235..816-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1474.1.1 ID=mRNA_P-wetherbeei_contig1474.1.1|Name=mRNA_P-wetherbeei_contig1474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig1474:235..816- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCTGCAATTCATCAGAGCGCCGCAGTTCTCTTGCGAACCGTTCCCAG
AAATTTCTTTGCTTTCGCGTGTTCCTTTACCTTCGGCCGAGCTATCTTGC
GTAAGCACTGATTAGGTGCTCATGCTCATGCTGCCGAAGCTTGACGCCTG
AGTTCTTACTCATGCGCAAATACGCGACGTCCTCGTTTGCTCCAATTTTC
CTTGAGTCCGACGCTGTTGGCTTCCGTTGCGGATCCGAGTCGACAACTGC
TCTGCTGCGCTCGCTTTCATGGACCAAGCAAGTGCCGTCAATACGGTTCG
TTCTTCATGGTAGGACAACCCCGCAGCAGATGGCGTTCGCGGCTATTCCT
CGAAGCTTCGTAAGGTCTACGCTTGCTCGAGATAGATCAGAGAAACCTCA
GGCTCATAACCTCAAGAGACGAATGAGGGCTCTCTCGGACCCGTCTCTCC
CCTATCGGCCTATATTATGATCGCTGGTGGGGGTGAAAGCGAAGGAGGTG
GCTGTAGAAACAGTGTCCTGTTTGCTATTTCTGTTGAAACAGAGAAGAGT
GAATCTTTCTCCCTAAACAACATTCTTTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1474:235..816-

>mRNA_P-wetherbeei_contig1474.1.1 ID=mRNA_P-wetherbeei_contig1474.1.1|Name=mRNA_P-wetherbeei_contig1474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig1474:235..816- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAAATACGCGACGTCCTCGTTTGCTCCAATTTTCCTTGAGTCCGA
CGCTGTTGGCTTCCGTTGCGGATCCGAGTCGACAACTGCTCTGCTGCGCT
CGCTTTCATGGACCAAGCAAGTGCCGTCAATACGGTTCGTTCTTCATGGT
AGGACAACCCCGCAGCAGATGGCGTTCGCGGCTATTCCTCGAAGCTTCGT
AAGGTCTACGCTTGCTCGAGATAGATCAGAGAAACCTCAGGCTCATAACC
TCAAGAGACGAATGAGGGCTCTCTCGGACCCGTCTCTCCCCTATCGGCCT
ATATTATGA
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