mRNA_P-wetherbeei_contig14733.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI) HSP 1 Score: 162 bits (411), Expect = 3.250e-43 Identity = 86/128 (67.19%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLS-SGPKSGTFKRELVGMFTPATFIEGTVEALIPSA 456
K TPMEQQVVDLK KHP VLLLVECGYR+RFFG DA AA+VLR+YAHMDHNF VAS+PT RL V GVVRQ E+AA+KAAGL+ +G KSGTFKREL +F+ AT++EG VEAL+PS+
Sbjct: 360 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEALMPSS 487
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A4D9D7L2_9STRA (MutS_I domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7L2_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.220e-35 Identity = 75/121 (61.98%), Postives = 88/121 (72.73%), Query Frame = 1
Query: 103 GAKKYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLS-SGPKSGTFKRELVGMFTPATFIE 426
G+ + TP+EQQVV LKR HPD LLLVECGYR RFFG+DA A+QVL +Y ++DH F VASIPT R+ V GVVRQ ETAA+KAAGLS SG KSGTF+REL G+FT T+ E
Sbjct: 161 GSTRLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 281
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: W7TSS8_9STRA (Dna mismatch repair protein msh3 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSS8_9STRA) HSP 1 Score: 135 bits (339), Expect = 7.970e-35 Identity = 75/121 (61.98%), Postives = 88/121 (72.73%), Query Frame = 1
Query: 103 GAKKYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLS-SGPKSGTFKRELVGMFTPATFIE 426
G+ + TP+EQQVV LKR HPD LLLVECGYR RFFG+DA A+QVL +Y ++DH F VASIPT R+ V GVVRQ ETAA+KAAGLS SG KSGTF+REL G+FT T+ E
Sbjct: 269 GSTRLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 389
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: Q9M512_BRANA (DNA mismatch repair protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=Q9M512_BRANA) HSP 1 Score: 130 bits (328), Expect = 1.610e-34 Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 1
Query: 112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPAT 417
KYTP+EQQVV+LKRKHPDV+L+VE GYR+RFFG+DAEIAA+VL +YAHMDH+FM AS+PT RL V GVV+Q ETAA+K+ G + ++G F R L G++T AT
Sbjct: 65 KYTPLEQQVVELKRKHPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRGLVNAGYKVGVVKQTETAAIKSHGAN---RAGPFFRGLSGLYTKAT 175
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A6J8AAJ0_MYTCO (DNA mismatch repair protein n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AAJ0_MYTCO) HSP 1 Score: 136 bits (342), Expect = 6.000e-34 Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 1
Query: 112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFI 423
KYTP+EQQ VD+K K+PD LLLVECGY++RFFG+DAE+AA+VL+++ H+DHNFM ASIPTHRL V GVV+QMETAA+KAAG + KS F R+L ++T +T I
Sbjct: 204 KYTPLEQQYVDIKNKYPDALLLVECGYKYRFFGEDAEVAAKVLKIFCHLDHNFMTASIPTHRLFVHVRRLVSAGYKVGVVKQMETAALKAAGDN---KSAPFTRQLQSLYTKSTLI 316
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A6P8YVN5_THRPL (DNA mismatch repair protein Msh3-like n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YVN5_THRPL) HSP 1 Score: 134 bits (337), Expect = 2.800e-33 Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = 1
Query: 94 AAAGAKKYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLI------------VGVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVEAL 444
A G K+TP+EQQVVDLK++HP VLL VECGY++RFFG+DAEIAAQ L +YAH+DHNFM ASIP HRL VG+V+Q+ETAA+KA S KS F R+L +FT AT I V+++
Sbjct: 163 AKFGKVKFTPLEQQVVDLKKEHPGVLLFVECGYKYRFFGEDAEIAAQELNIYAHLDHNFMTASIPVHRLHAHVGRLVEKGHKVGIVKQVETAALKAM---SDNKSAPFTRKLQHLFTRATLIGEDVDSI 288
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: UPI001458765E (LOW QUALITY PROTEIN: DNA mismatch repair protein Msh3-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458765E) HSP 1 Score: 132 bits (333), Expect = 9.780e-33 Identity = 71/128 (55.47%), Postives = 90/128 (70.31%), Query Frame = 1
Query: 100 AGAK-KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVEAL 444
AG K KYTP+EQQ VD+K K+P +L VECGY++RFFG+DAEIAA+VL+++ H+DHNFM ASIPTHRL V GVV+QMETAA+KAAG + +S F REL ++T +T I V L
Sbjct: 247 AGKKIKYTPLEQQFVDIKEKYPHAVLCVECGYKYRFFGEDAEIAAEVLKIFCHLDHNFMTASIPTHRLFVHVRRLVAAGYKVGVVKQMETAALKAAGDN---RSAPFTRELSALYTKSTLIGEDVNPL 371
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A2P5CUR2_PARAD (DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CUR2_PARAD) HSP 1 Score: 129 bits (323), Expect = 1.360e-32 Identity = 68/114 (59.65%), Postives = 84/114 (73.68%), Query Frame = 1
Query: 112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPAT 417
KYTP+EQQVVDLK+KHPDVLL+VE GY++RFFG+DAE AA+VL +YAHMDHNF+ AS+PT RL V GVV+Q ETAA+KA GL+ + G F R L ++T AT
Sbjct: 125 KYTPLEQQVVDLKKKHPDVLLMVEVGYKYRFFGEDAETAARVLGIYAHMDHNFLTASVPTFRLSVHVRRLVSAGFKVGVVKQTETAAMKAHGLN---RLGPFCRGLSALYTKAT 235
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: UPI00148A8C1D (DNA mismatch repair protein Msh3 isoform X1 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A8C1D) HSP 1 Score: 131 bits (329), Expect = 1.860e-32 Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1
Query: 112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVE 438
KYTP+EQQ ++LK K+PD LL VECGY++RFFG+DAE AA VL++Y H DHNFM ASIP HRL V GVV+QMETAA+KA G + KSG F R+L M+T +T V+
Sbjct: 212 KYTPLEQQYIELKEKYPDTLLFVECGYKYRFFGEDAENAAHVLKIYCHQDHNFMTASIPVHRLFVHVRRLVAAGYKVGVVKQMETAALKACGDN---KSGPFTRQLTAMYTKSTLFGQDVD 329
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A7K4IY56_GEOCA (MSH3 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K4IY56_GEOCA) HSP 1 Score: 122 bits (305), Expect = 2.170e-32 Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 1
Query: 115 YTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFI 423
YTP+E Q +++K+++ D +L VECGY++RFFG+DAEIAA+ L +Y H DHNFM ASIPTHRL V GVV+QMETAA+KAAG + KS F R+L ++T +T I
Sbjct: 24 YTPLELQFIEMKKQYKDAVLCVECGYKYRFFGEDAEIAAKELNIYCHQDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQMETAALKAAGEN---KSSLFSRKLTALYTKSTLI 135 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig14733.1.1 >prot_P-wetherbeei_contig14733.1.1 ID=prot_P-wetherbeei_contig14733.1.1|Name=mRNA_P-wetherbeei_contig14733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp TGDGNGGCGGGSGGGSGDGGRSGGKGKGRAAAAAGAKKYTPMEQQVVDLKback to top mRNA from alignment at P-wetherbeei_contig14733:6..1229- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig14733.1.1 ID=mRNA_P-wetherbeei_contig14733.1.1|Name=mRNA_P-wetherbeei_contig14733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1224bp|location=Sequence derived from alignment at P-wetherbeei_contig14733:6..1229- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig14733:6..1229- >mRNA_P-wetherbeei_contig14733.1.1 ID=mRNA_P-wetherbeei_contig14733.1.1|Name=mRNA_P-wetherbeei_contig14733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig14733:6..1229- (Phaeothamnion wetherbeei SAG_119_79)back to top |