mRNA_P-wetherbeei_contig14719.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14719.1.1
Unique NamemRNA_P-wetherbeei_contig14719.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14719.1.1 vs. uniprot
Match: UPI0018F242B5 (IPT/TIG domain-containing protein n=1 Tax=Acidipila sp. 4G-K13 TaxID=2303751 RepID=UPI0018F242B5)

HSP 1 Score: 74.7 bits (182), Expect = 5.800e-12
Identity = 64/207 (30.92%), Postives = 103/207 (49.76%), Query Frame = 1 
Query:   25 ATDVVTDAGSGELIVSIGG-GAPAHADSLVRVDPETGEVTGEQQIGPNPTQLVLSADGSVLYVVVANGPGSIVKQLHTADLTLIRQFTVDDAGALPVLQLDISPVDSDIVAIS---HDQAGALARGVSIYEDGVRRATTYAVADAPGGLSWGSASRVYF--SHGTVTDRLDVAPSGVTFASNIGGMPTSGS-TSFFNGELFFDTSSV 624
            A D+V +A  G L  S+    A    +S+V +DP TG VT + Q+G NP +L LS+DG+ L+V + +G  S+  Q++     ++ QF V   G      L   P    +VA+    +  A A A G++IY+ GV RA  +   +  G +S+GS+    +  S     + L V  +G+T AS + G+    +   +  G L+  T  V
Sbjct:  409 ANDIVFNATDGLLYASVPATSAGVSGNSVVGIDPTTGNVTRQIQVGSNPNKLALSSDGTQLFVGL-DGAASVA-QVNLTQGKVVNQFQVGVEG------LYNPPAALFLVAVPGLPNSVAVATAAGITIYDSGVARADEWTSGE--GAMSFGSSGSTLYVLSDNNTVEELTVGSTGITAASALSGLTQYANWLQYDKGNLYLSTGQV 605
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BLAST of mRNA_P-wetherbeei_contig14719.1.1 vs. uniprot
Match: UPI0013773544 (hypothetical protein n=1 Tax=Aquabacterium fontiphilum TaxID=450365 RepID=UPI0013773544)

HSP 1 Score: 58.9 bits (141), Expect = 9.890e-7
Identity = 43/141 (30.50%), Postives = 74/141 (52.48%), Query Frame = 1 
Query:    7 SLDLTNATDVVTDAGSGELIVSIGGGAP-AHADSLVRVDPETGEVTGEQQIGPNPTQLVLSADGSVLYVVVANGPGSIVKQLHTADLTLIRQFTVDDA---GALPVLQLDISPVDSDIVAISHDQAGALAR--GVSIYEDG 411
            ++ LT+  DVV +A + EL+VS+G  A   + +S+ R+    G + G Q +G  P ++ LS+DG+V YV +   P   +KQ +    T I   +   +   GA     + +SP +++++A+S        R  GV I E+G
Sbjct:   37 AVSLTSVNDVVFNASTQELLVSVGSLAGYGYGNSITRIG-LNGTILGSQFVGSEPGKIALSSDGTVGYVALQAAPS--IKQFNALTGTTISSISTPSSTYSGATRAEDIAVSPDNANVIAVSISNTCCSPRHEGVYIIENG 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14719.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0018F242B55.800e-1230.92IPT/TIG domain-containing protein n=1 Tax=Acidipil... [more]
UPI00137735449.890e-730.50hypothetical protein n=1 Tax=Aquabacterium fontiph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14719contigP-wetherbeei_contig14719:292..930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog240015.ACP_1574
PFAMsDUF11,TIG
Model size639
Max annot lvl204432|Acidobacteriia
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.9e-12
EggNOG OGsCOG3391@1|root,COG3391@2|Bacteria,3Y31A@57723|Acidobacteria,2JHIN@204432|Acidobacteriia
DescriptionInvolved in the tonB-independent uptake of proteins
Cds size639
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186031.4735224-CDS-P-wetherbeei_contig14719:291..9301683186031.4735224-CDS-P-wetherbeei_contig14719:291..930Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14719 292..930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14719.1.1prot_P-wetherbeei_contig14719.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14719 292..930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14719.1.1

>prot_P-wetherbeei_contig14719.1.1 ID=prot_P-wetherbeei_contig14719.1.1|Name=mRNA_P-wetherbeei_contig14719.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
SFSLDLTNATDVVTDAGSGELIVSIGGGAPAHADSLVRVDPETGEVTGEQ
QIGPNPTQLVLSADGSVLYVVVANGPGSIVKQLHTADLTLIRQFTVDDAG
ALPVLQLDISPVDSDIVAISHDQAGALARGVSIYEDGVRRATTYAVADAP
GGLSWGSASRVYFSHGTVTDRLDVAPSGVTFASNIGGMPTSGSTSFFNGE
LFFDTSSVSYNG*
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mRNA from alignment at P-wetherbeei_contig14719:292..930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14719.1.1 ID=mRNA_P-wetherbeei_contig14719.1.1|Name=mRNA_P-wetherbeei_contig14719.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig14719:292..930+ (Phaeothamnion wetherbeei SAG_119_79)
TCGTTCTCGCTCGATCTCACGAACGCGACCGACGTCGTCACGGATGCCGG
ATCTGGCGAGCTCATCGTCAGCATCGGTGGTGGTGCGCCGGCGCACGCCG
ACTCGTTGGTGCGCGTCGATCCGGAGACCGGCGAGGTGACGGGCGAGCAG
CAGATCGGTCCCAACCCGACGCAGCTCGTGCTGTCCGCCGACGGATCGGT
GCTCTACGTGGTGGTGGCCAACGGCCCCGGGTCGATCGTCAAGCAGTTGC
ACACGGCAGACCTCACGCTGATCCGTCAGTTCACGGTCGACGACGCCGGC
GCGCTGCCGGTGTTGCAGCTCGACATCTCGCCGGTGGATTCCGACATCGT
CGCGATCAGCCACGATCAAGCGGGCGCATTGGCGCGCGGCGTGTCGATCT
ACGAGGACGGGGTTCGTCGTGCCACGACGTACGCCGTCGCCGATGCGCCG
GGGGGGCTGTCGTGGGGGTCGGCGTCTCGCGTCTACTTCAGCCACGGCAC
GGTCACCGACCGACTCGACGTCGCACCATCCGGCGTCACGTTCGCCAGCA
ACATCGGGGGCATGCCCACGTCGGGATCGACCTCGTTCTTCAACGGCGAG
CTGTTCTTCGACACGAGCTCGGTGAGCTACAACGGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14719:292..930+

>mRNA_P-wetherbeei_contig14719.1.1 ID=mRNA_P-wetherbeei_contig14719.1.1|Name=mRNA_P-wetherbeei_contig14719.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig14719:292..930+ (Phaeothamnion wetherbeei SAG_119_79)
TCGTTCTCGCTCGATCTCACGAACGCGACCGACGTCGTCACGGATGCCGG
ATCTGGCGAGCTCATCGTCAGCATCGGTGGTGGTGCGCCGGCGCACGCCG
ACTCGTTGGTGCGCGTCGATCCGGAGACCGGCGAGGTGACGGGCGAGCAG
CAGATCGGTCCCAACCCGACGCAGCTCGTGCTGTCCGCCGACGGATCGGT
GCTCTACGTGGTGGTGGCCAACGGCCCCGGGTCGATCGTCAAGCAGTTGC
ACACGGCAGACCTCACGCTGATCCGTCAGTTCACGGTCGACGACGCCGGC
GCGCTGCCGGTGTTGCAGCTCGACATCTCGCCGGTGGATTCCGACATCGT
CGCGATCAGCCACGATCAAGCGGGCGCATTGGCGCGCGGCGTGTCGATCT
ACGAGGACGGGGTTCGTCGTGCCACGACGTACGCCGTCGCCGATGCGCCG
GGGGGGCTGTCGTGGGGGTCGGCGTCTCGCGTCTACTTCAGCCACGGCAC
GGTCACCGACCGACTCGACGTCGCACCATCCGGCGTCACGTTCGCCAGCA
ACATCGGGGGCATGCCCACGTCGGGATCGACCTCGTTCTTCAACGGCGAG
CTGTTCTTCGACACGAGCTCGGTGAGCTACAACGGCTAG
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