mRNA_P-wetherbeei_contig1039.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1039.2.1
Unique NamemRNA_P-wetherbeei_contig1039.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1039.2.1 vs. uniprot
Match: D7FXX5_ECTSI (RING Zn finger-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX5_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.300e-27
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 2 
Query:  284 WKLLRENFRLAALREIERQKSETIAKTHELRERLKKTASQQRDSRMCKVCWDDSANTICLDCGHQSLCAACGTLLSFCPVCMATIRELVRLR 559
            W  LR+NFRLAALR I + K E + K  E+R+R  K    Q DSR CK+CWD + NT+CLDCGHQ +C  CG  ++FCP+CM  I +LV L+
Sbjct:   70 WTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ 161
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BLAST of mRNA_P-wetherbeei_contig1039.2.1 vs. uniprot
Match: A0A1B0GIB8_LUTLO (Putative apoptosis inhibitor iap n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A1B0GIB8_LUTLO)

HSP 1 Score: 58.2 bits (139), Expect = 3.010e-6
Identity = 45/156 (28.85%), Postives = 67/156 (42.95%), Query Frame = 2 
Query:   80 DAHPEDPSAVFIHSRALFKGKRALQFARRGISRDLHSEVTSCFALRLSLSAIMNLPAENDSRE------RVLFLWKLLRENFRLAALREIERQKSETIAKTHELRERLKKTASQQ-RDSRMCKVCWDDSANTICLDCGHQSLCAACGTLLSFCPVC 526
            D H E       HS      K  L  AR+G       +V  C   R   S   N   E+D  E      R  FL      N  LAA+ E +  ++  + +  E  ER ++   +   D +MCK+C+++   T+CL CGH ++C  C + +  CP C
Sbjct:  268 DLHIERNRLKSFHSWRGMADKHEL--ARQGFYFTGIDDVVQCIFCRTQFS---NWQPESDILEAHATPGRCPFLRGFETANVPLAAIMEDDSPRNSPLRRMMECDERCREICDETVEDDKMCKICYENPYETVCLPCGHVAMCTQCASAVDRCPFC 418
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1039.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXX5_ECTSI4.300e-2753.26RING Zn finger-containing protein n=2 Tax=Ectocarp... [more]
A0A1B0GIB8_LUTLO3.010e-628.85Putative apoptosis inhibitor iap n=1 Tax=Lutzomyia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1039contigP-wetherbeei_contig1039:1491..2394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXX5
PFAMsPlus-3,zf-C3HC4_3
Model size717
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.07e-29
EggNOG OGs2A73H@1|root,2RYD8@2759|Eukaryota
DescriptionPlus-3 domain
Cds size327
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.8304517-UTR-P-wetherbeei_contig1039:1490..17251683185866.8304517-UTR-P-wetherbeei_contig1039:1490..1725Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1039 1491..1725 +
1683185866.871147-UTR-P-wetherbeei_contig1039:2239..23941683185866.871147-UTR-P-wetherbeei_contig1039:2239..2394Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1039 2240..2394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.8401155-CDS-P-wetherbeei_contig1039:1725..18601683185866.8401155-CDS-P-wetherbeei_contig1039:1725..1860Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1039 1726..1860 +
1683185866.8553696-CDS-P-wetherbeei_contig1039:2047..22391683185866.8553696-CDS-P-wetherbeei_contig1039:2047..2239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1039 2048..2239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1039.2.1prot_P-wetherbeei_contig1039.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1039 1726..2239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1039.2.1

>prot_P-wetherbeei_contig1039.2.1 ID=prot_P-wetherbeei_contig1039.2.1|Name=mRNA_P-wetherbeei_contig1039.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MNLPAENDSRERVLFLWKLLRENFRLAALREIERQKSETIAKTHELRERL
KKTASQQRDSRMCKVCWDDSANTICLDCGHQSLCAACGTLLSFCPVCMAT
IRELVRLR*
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mRNA from alignment at P-wetherbeei_contig1039:1491..2394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1039.2.1 ID=mRNA_P-wetherbeei_contig1039.2.1|Name=mRNA_P-wetherbeei_contig1039.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=904bp|location=Sequence derived from alignment at P-wetherbeei_contig1039:1491..2394+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCCTTGCCTCTTTCCTACTTTTTCGGGTAGCCGCGTCCTAACAGCGT
CCTTGTTGAGTCCGGTACAGGTGGAAGAAGATGCGCACCCCGAGGACCCA
AGTGCCGTCTTTATTCACAGTAGAGCACTCTTCAAAGGCAAACGGGCGCT
CCAGTTTGCGCGACGCGGCATTTCCCGCGATCTTCATTCCGAAGTTACGA
GCTGCTTCGCCTTGCGCCTTTCGTTATCTGCAATCATGAATTTGCCTGCA
GAAAATGACAGTCGCGAGCGGGTTCTCTTTTTATGGAAGCTGCTCCGCGA
GAACTTTAGGCTGGCTGCTCTCAGGGAGATTGAGCGACAAAAGAGCGAGA
CGATTGCGAAAACACACGAGGTGAGGGAGGGTTTGCACGGCGTTTACCTC
AAATGCCATCTCTCCGACTATCCGTCTCCGAGGCCTGATCAGAGCCATTG
GAGAGCCATGTGTGCATAAGACCTCTCTTCCCTCTTCCTCTCCCCATTCC
TGCTGCACCCCTCTTGGTATTCCCCTTATCTCTTCTCCTTTTTGGCCTCA
CGCCCAGTTGCGGGAGCGGCTGAAGAAGACAGCATCCCAGCAGCGCGATA
GTAGGATGTGCAAGGTGTGTTGGGACGACAGCGCAAACACAATATGTCTC
GATTGCGGTCATCAGAGCCTTTGCGCCGCGTGCGGGACTTTACTCTCTTT
CTGTCCTGTCTGTATGGCTACGATACGGGAACTTGTTAGGTTGCGGTGAT
ATATAGGCGCCAGTATCTCTGCTGAGCCCTTGTGTAAACAACGAAACCAT
TACATGCAAAATCCACAGATGCCCTGTGCTGACTGTGGGAAGTGGAGTTT
GGCGGAAGCAGCTTCAAGATGTTTGTTTTGACGGGAGAGTTGTAAGTGGG
CTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1039:1491..2394+

>mRNA_P-wetherbeei_contig1039.2.1 ID=mRNA_P-wetherbeei_contig1039.2.1|Name=mRNA_P-wetherbeei_contig1039.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig1039:1491..2394+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATTTGCCTGCAGAAAATGACAGTCGCGAGCGGGTTCTCTTTTTATG
GAAGCTGCTCCGCGAGAACTTTAGGCTGGCTGCTCTCAGGGAGATTGAGC
GACAAAAGAGCGAGACGATTGCGAAAACACACGAGTTGCGGGAGCGGCTG
AAGAAGACAGCATCCCAGCAGCGCGATAGTAGGATGTGCAAGGTGTGTTG
GGACGACAGCGCAAACACAATATGTCTCGATTGCGGTCATCAGAGCCTTT
GCGCCGCGTGCGGGACTTTACTCTCTTTCTGTCCTGTCTGTATGGCTACG
ATACGGGAACTTGTTAGGTTGCGGTGA
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