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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2895 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 1605 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186031.2307343-UTR-P-wetherbeei_contig1471:1..219 | 1683186031.2307343-UTR-P-wetherbeei_contig1471:1..219 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1471 2..219 - |
| 1683186031.2662268-UTR-P-wetherbeei_contig1471:2181..3253 | 1683186031.2662268-UTR-P-wetherbeei_contig1471:2181..3253 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1471 2182..3253 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186031.2389953-CDS-P-wetherbeei_contig1471:219..1279 | 1683186031.2389953-CDS-P-wetherbeei_contig1471:219..1279 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1471 220..1279 - |
| 1683186031.247357-CDS-P-wetherbeei_contig1471:1636..2181 | 1683186031.247357-CDS-P-wetherbeei_contig1471:1636..2181 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1471 1637..2181 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1471.1.2 >prot_P-wetherbeei_contig1471.1.2 ID=prot_P-wetherbeei_contig1471.1.2|Name=mRNA_P-wetherbeei_contig1471.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=535bp
MRSWRSSGRWQRPRTRSPPRAKRSAWNTCEFPTSWSTPSLAAAAAASSAA
AASASPRWSAPRRRRSRCRRCGTSCRARSTPCGWRWIAPARASLMRELHR
LDGKHAVVVAAPTASGSAFNTAGGPPIGLGGGGDDGSNSMATMQEAFHLS
DPAAAPAGTTAKVVVSAVVAAAAAGVYPTSPRFQGALREVLRHCSDIEDG
TTPVQFMSSQGVLNAQACATDLDKMVGPDNAVVLLPLATLYLVRVSSGPT
HLDEAEAVCRRAVALARWTAALMPFDQAIFRYMAALFVLQMTPQQPQAPS
PPSGARLERQRQRGGCFAAAVTLRRKILTAEGKVCETLAMVEALSTLERR
LGGDDFFVLMALSTLRRLFAVAYTELFNVVRRMFQQAQDMADSMAKSAAA
AVAGGGQGGGHSGGGGDVPSFLRNPVGHGPSRDRQGLNAHGCLAVPPSGG
RREPGGDVTVRLQRVDHDARRGDWRWRAGKWQRREKLRRWCRDGRWHGGG
NAYTHGGGNGEVGAPAPGGDEDAPADSGCPSYAR* back to topmRNA from alignment at P-wetherbeei_contig1471:2..3253- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig1471.1.2 ID=mRNA_P-wetherbeei_contig1471.1.2|Name=mRNA_P-wetherbeei_contig1471.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3252bp|location=Sequence derived from alignment at P-wetherbeei_contig1471:2..3253- (Phaeothamnion wetherbeei SAG_119_79)
CCAAGTCCTTCCTGTCGATGAGGGAATTTCACGGATGCATCCTTCCTGAC
ACGGGGAAACTGCGTTGTGCCAAATGCAGCGCGACCTGGTGAGTTCGCGT
CTTCGCTTCTGAGAGCATAACGTGATGCAACTTTCAGCAATTTCATCTGC
TCTCCCTCATCTTGTACGATTGCTGGACGCAAGTACTGCACGTAAGAATA
TTTCGTGTACCACCACCCGACGCACAACAACGCGTGCAAGCTTAACGCGG
CCGCAACGAAACGATGCAGCGACACCGTGATCGCTTGCCCACGCCCAAGA
CATTGGCCCGCGTGCTGCTTCAGATGGTAAAACCTCACCCTTCATGGTTG
CCAGCTCCTTTTGAATAACTGCGTGTGGCCGAGGTGGATCACAAAGCTAT
GAAATGATTCATTCCACAAGGACCAGCACGATTCCCCTCGGCACGAAGAC
GTAGAAGGCTTGCTTTACCTGATTACTAAGGCACATTTCCGTGGCGTATT
GGGTCGGTCAAACTTTGGATTGCAGCAGCCCCTCGCCTTCCAGAAACCAC
CTTCCGCGGTTTTCCTCCCCTCCCCCTCTTCGTGGTCTCTAACGACTGCC
GTCTCCTTGCTGTCTGCCGCTACTTATCCATCCACGGGCCCGCCGACGGC
GCGGCAGCTCTTCCTCCTCTGGATCTAGAGCGGCGTGCCGGAGCGTGTCG
AGGAATCGCTGCTGAACTCGCACGCTGAAGACCCGCCGGTGCCATCAGGG
GCACGCCGGGGGGTAAATCCCCGCGGCGGGATGGAAAGCAGGAGAGCCGT
CAACAGCGGAGCACACGCGGGACGGGGGCGACCTCGGCTGGCTGGCGCTG
GCGACGGCCGAGCACGCCGGCAGGATCGCTGAGGAGATTTATTTCGAGCG
CGGCACCACACGGCTGGCGCCGACACCGCCCGGCTGGAAGAGTCGCTCCC
CACCGTCTCCTCCGCCACGCGGCTCTCCGCGGCGGTGGCGACGCACCTGA
AGCGGGCAGTGGCAGCGCTGCGGAGGCGGCTGGACGCCACCGCGCGGGTG
GCGGCTATGCCGTCGGTGTCGTATGCGTTCCTGGAGGAGCTCAGGGAGGT
GGCAACGACCGAGAACGCGCTCGCCGCCGAGGGCGAAGCGCTCTGCATGG
AATACATGTGAGTTTCCGACGTCTTGGTCGACGCCATCGTTGGCAGCGGC
GGCAGCGGCATCCTCGGCAGCGGCGGCGAGCGCTTCACCGAGGTGGTCGG
CGCCGCGGAGGCGACGGAGTCGCTGCAGAAGGTGTGGAACAAGCTGCCGG
GCACGGTCGACGCCGTGCGGCTGGCGCTGGATCGCGCCGGCAAGAGCGTC
GCTGATGCGGGAGCTGCACCGCCTTGACGGGAAGCACGCCGTCGTCGTTG
CCGCCCCGACTGCCTCCGGCTCGGCGTTCAACACCGCAGGCGGTCCCCCG
ATTGGCCTCGGCGGCGGCGGGGATGACGGCAGTAACAGCATGGCAACCAT
GCAGGAGGCCTTTCATCTGTCTGACCCAGCGGCTGCGCCGGCTGGGACGA
CGGCCAAGGTGGTGGTGTCAGCGGTGGTGGCCGCGGCAGCGGCGGGCGTC
TACCCAACGTCGCCTAGGTGAGTACAACGGTCGCGGAACCCGCCGGAAAG
CTGTGAGGAACCTGCATAAACGGCTGGTTGTTCCTCTGTTACTGCCTTAA
CGCATTGCCAGGGGAGTGGCAGGTGTCATGGTTTGACTTTTCGGCTTTGG
GGTGGATTCACTTTTAGGCAGATTCGTTCCTCTCTGGACCTGATACGAAG
CTGTTGGTGCGTCTTTCTCATCGTCTTTCGCCCCTCTCGCCTCTCCTCCC
ACCAAATGGAGCGGTGCTGACCCTTTTCTTGTTTCTCTCTTCTCTCAGAC
TTCTTTCGTCCTTCCCCCTGACCGGGGGGCGCCGAAAAACGGCCGAAAAC
TTCGCCGTCGCGCGGCCGCTCCAGATTCCAGGGCGCCCTCCGCGAGGTGC
TGCGGCACTGCAGCGACATCGAGGACGGCACCACCCCCGTCCAATTTATG
AGCTCACAGGGCGTCCTTAACGCCCAGGCCTGCGCCACGGACCTCGACAA
GATGGTGGGGCCCGATAATGCCGTCGTCTTGCTGCCGCTGGCGACGCTGT
ATCTCGTCCGGGTCAGCTCCGGGCCGACCCACTTGGATGAGGCGGAGGCG
GTCTGCCGGCGGGCCGTGGCGCTGGCGCGGTGGACGGCGGCGCTGATGCC
CTTCGACCAGGCCATCTTCCGCTACATGGCGGCGCTCTTCGTGCTGCAGA
TGACTCCGCAGCAGCCACAGGCGCCGTCGCCGCCGTCGGGCGCGCGGCTG
GAGCGGCAGCGGCAGCGCGGCGGCTGCTTCGCGGCGGCGGTGACGCTGCG
GCGGAAGATCCTGACGGCGGAGGGGAAGGTGTGCGAGACCCTCGCGATGG
TGGAGGCGCTTTCGACGCTCGAAAGGCGGCTCGGCGGCGACGACTTCTTT
GTGCTAATGGCGCTGTCGACGCTTCGCCGCCTTTTCGCGGTGGCCTACAC
GGAGCTGTTCAACGTCGTCCGGCGCATGTTCCAGCAGGCACAGGACATGG
CGGACTCAATGGCAAAATCAGCGGCGGCGGCAGTAGCAGGCGGCGGCCAA
GGCGGCGGCCATAGCGGCGGCGGCGGCGACGTCCCGTCGTTTCTGCGGAA
TCCAGTGGGACACGGGCCCAGCCGCGATCGGCAAGGGCTGAATGCACATG
GCTGTCTTGCCGTTCCACCAAGCGGCGGTCGTCGGGAACCTGGCGGAGAT
GTGACTGTCCGGCTTCAGCGCGTCGATCACGATGCTCGCCGAGGCGACTG
GCGCTGGCGCGCTGGAAAGTGGCAGAGGAGAGAAAAGTTGCGGCGGTGGT
GCCGTGACGGTCGATGGCATGGCGGGGGAAATGCGTACACGCATGGCGGC
GGCAACGGTGAGGTCGGAGCGCCTGCACCGGGTGGAGATGAAGACGCGCC
GGCTGATAGCGGATGCCCGTCGTATGCTCGCTGAAGCCGACGACATGGCT
GAGCGAATGAGCGTGAAGCAAGAGAGTGAAGAAACGGGAGCTAGTGCTGG
AGCCCTTCTCAAGCTGGTGTTCGGGTTGCAGCTGTCTAGACTGTCAGGGG
GCTTCTCCCGTAGACAAAGTAGCACAAGTATTTAGAGGAGGATGTACTCT
TTTTTGGAGATCGACGTTGGGGAGAGATTACAGTTTAGAGCAAGTTATTA
AG back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig1471:2..3253- >mRNA_P-wetherbeei_contig1471.1.2 ID=mRNA_P-wetherbeei_contig1471.1.2|Name=mRNA_P-wetherbeei_contig1471.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1605bp|location=Sequence derived from alignment at P-wetherbeei_contig1471:2..3253- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTTCCTGGAGGAGCTCAGGGAGGTGGCAACGACCGAGAACGCGCTC
GCCGCCGAGGGCGAAGCGCTCTGCATGGAATACATGTGAGTTTCCGACGT
CTTGGTCGACGCCATCGTTGGCAGCGGCGGCAGCGGCATCCTCGGCAGCG
GCGGCGAGCGCTTCACCGAGGTGGTCGGCGCCGCGGAGGCGACGGAGTCG
CTGCAGAAGGTGTGGAACAAGCTGCCGGGCACGGTCGACGCCGTGCGGCT
GGCGCTGGATCGCGCCGGCAAGAGCGTCGCTGATGCGGGAGCTGCACCGC
CTTGACGGGAAGCACGCCGTCGTCGTTGCCGCCCCGACTGCCTCCGGCTC
GGCGTTCAACACCGCAGGCGGTCCCCCGATTGGCCTCGGCGGCGGCGGGG
ATGACGGCAGTAACAGCATGGCAACCATGCAGGAGGCCTTTCATCTGTCT
GACCCAGCGGCTGCGCCGGCTGGGACGACGGCCAAGGTGGTGGTGTCAGC
GGTGGTGGCCGCGGCAGCGGCGGGCGTCTACCCAACGTCGCCTAGATTCC
AGGGCGCCCTCCGCGAGGTGCTGCGGCACTGCAGCGACATCGAGGACGGC
ACCACCCCCGTCCAATTTATGAGCTCACAGGGCGTCCTTAACGCCCAGGC
CTGCGCCACGGACCTCGACAAGATGGTGGGGCCCGATAATGCCGTCGTCT
TGCTGCCGCTGGCGACGCTGTATCTCGTCCGGGTCAGCTCCGGGCCGACC
CACTTGGATGAGGCGGAGGCGGTCTGCCGGCGGGCCGTGGCGCTGGCGCG
GTGGACGGCGGCGCTGATGCCCTTCGACCAGGCCATCTTCCGCTACATGG
CGGCGCTCTTCGTGCTGCAGATGACTCCGCAGCAGCCACAGGCGCCGTCG
CCGCCGTCGGGCGCGCGGCTGGAGCGGCAGCGGCAGCGCGGCGGCTGCTT
CGCGGCGGCGGTGACGCTGCGGCGGAAGATCCTGACGGCGGAGGGGAAGG
TGTGCGAGACCCTCGCGATGGTGGAGGCGCTTTCGACGCTCGAAAGGCGG
CTCGGCGGCGACGACTTCTTTGTGCTAATGGCGCTGTCGACGCTTCGCCG
CCTTTTCGCGGTGGCCTACACGGAGCTGTTCAACGTCGTCCGGCGCATGT
TCCAGCAGGCACAGGACATGGCGGACTCAATGGCAAAATCAGCGGCGGCG
GCAGTAGCAGGCGGCGGCCAAGGCGGCGGCCATAGCGGCGGCGGCGGCGA
CGTCCCGTCGTTTCTGCGGAATCCAGTGGGACACGGGCCCAGCCGCGATC
GGCAAGGGCTGAATGCACATGGCTGTCTTGCCGTTCCACCAAGCGGCGGT
CGTCGGGAACCTGGCGGAGATGTGACTGTCCGGCTTCAGCGCGTCGATCA
CGATGCTCGCCGAGGCGACTGGCGCTGGCGCGCTGGAAAGTGGCAGAGGA
GAGAAAAGTTGCGGCGGTGGTGCCGTGACGGTCGATGGCATGGCGGGGGA
AATGCGTACACGCATGGCGGCGGCAACGGTGAGGTCGGAGCGCCTGCACC
GGGTGGAGATGAAGACGCGCCGGCTGATAGCGGATGCCCGTCGTATGCTC
GCTGA back to top
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