mRNA_P-wetherbeei_contig14705.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14705.1.1
Unique NamemRNA_P-wetherbeei_contig14705.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig14705.1.1 vs. uniprot
Match: D7FTY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.500e-5
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 GKQEVSNRFLARTLDGLLSHNRRVEEDECWRRRGVEERARE 129
            G+  V+  FL  T+ GL SHN+R EE++CWR+ G+E+RARE
Sbjct:   12 GRAGVNKNFLLNTVHGLKSHNKREEEEDCWRQHGLEQRARE 52
[Close]
BLAST of mRNA_P-wetherbeei_contig14705.1.1 vs. uniprot
Match: A0A6H5KLX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 7.440e-5
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   19 VSNRFLARTLDGLLSHNRRVEEDECWRRRGVEERAREL----EGGTKRPRKEASDRKIDDQQAS----RKLWAERKAQA 231
            V+  FL  T+ GL SHN+R EE++CWR+ G+E+RARE     +    R +  A         AS    R+ WAERK +A
Sbjct:   27 VNKNFLLNTVHGLQSHNKREEEEDCWRQYGLEQRARERLLAHDANRNRQKFPADGGDTSASHASDVDARRFWAERKERA 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14705.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTY1_ECTSI2.500e-553.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLX3_9PHAE7.440e-540.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14705contigP-wetherbeei_contig14705:884..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size417
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002810.1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186031.1120682-CDS-P-wetherbeei_contig14705:883..13001683186031.1120682-CDS-P-wetherbeei_contig14705:883..1300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14705 884..1300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14705.1.1prot_P-wetherbeei_contig14705.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14705 884..1300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14705.1.1

>prot_P-wetherbeei_contig14705.1.1 ID=prot_P-wetherbeei_contig14705.1.1|Name=mRNA_P-wetherbeei_contig14705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MGGKQEVSNRFLARTLDGLLSHNRRVEEDECWRRRGVEERARELEGGTKR
PRKEASDRKIDDQQASRKLWAERKAQAAASAATRDSELLAAKKERRLSSS
SSSSLSSSSEASSSDEEATPRKKDSSRKKKRKEEKKTKK
back to top

mRNA from alignment at P-wetherbeei_contig14705:884..1300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14705.1.1 ID=mRNA_P-wetherbeei_contig14705.1.1|Name=mRNA_P-wetherbeei_contig14705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig14705:884..1300+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGGCAAGCAAGAGGTGAGCAATCGCTTCCTCGCAAGAACTCTCGA
CGGCTTGCTCTCGCACAACCGACGCGTAGAAGAAGACGAGTGCTGGAGGC
GTCGCGGTGTCGAGGAGCGGGCGCGCGAGCTTGAGGGAGGAACAAAACGC
CCTCGCAAGGAGGCAAGCGACCGCAAAATTGACGACCAGCAAGCGTCCAG
AAAGCTGTGGGCGGAGCGCAAGGCCCAAGCGGCAGCGTCGGCGGCGACGC
GAGATTCAGAGCTTTTGGCGGCAAAGAAAGAGCGACGTCTCTCCTCGTCG
TCATCGTCGTCCTTGTCCTCGTCGTCCGAGGCTTCTTCGAGCGACGAGGA
AGCTACGCCCAGAAAGAAGGACAGCAGCAGAAAGAAGAAAAGGAAGGAGG
AAAAGAAGACGAAAAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14705:884..1300+

>mRNA_P-wetherbeei_contig14705.1.1 ID=mRNA_P-wetherbeei_contig14705.1.1|Name=mRNA_P-wetherbeei_contig14705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig14705:884..1300+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGGCAAGCAAGAGGTGAGCAATCGCTTCCTCGCAAGAACTCTCGA
CGGCTTGCTCTCGCACAACCGACGCGTAGAAGAAGACGAGTGCTGGAGGC
GTCGCGGTGTCGAGGAGCGGGCGCGCGAGCTTGAGGGAGGAACAAAACGC
CCTCGCAAGGAGGCAAGCGACCGCAAAATTGACGACCAGCAAGCGTCCAG
AAAGCTGTGGGCGGAGCGCAAGGCCCAAGCGGCAGCGTCGGCGGCGACGC
GAGATTCAGAGCTTTTGGCGGCAAAGAAAGAGCGACGTCTCTCCTCGTCG
TCATCGTCGTCCTTGTCCTCGTCGTCCGAGGCTTCTTCGAGCGACGAGGA
AGCTACGCCCAGAAAGAAGGACAGCAGCAGAAAGAAGAAAAGGAAGGAGG
AAAAGAAGACGAAAAAG
back to top