mRNA_P-wetherbeei_contig14701.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14701.2.1
Unique NamemRNA_P-wetherbeei_contig14701.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14701.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14701contigP-wetherbeei_contig14701:2..1686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1685
Hectar predicted targeting categoryother localisation
Exons1
Cds size1065
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186031.065645-UTR-P-wetherbeei_contig14701:1..961683186031.065645-UTR-P-wetherbeei_contig14701:1..96Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14701 2..96 +
1683186031.0845325-UTR-P-wetherbeei_contig14701:1161..16861683186031.0845325-UTR-P-wetherbeei_contig14701:1161..1686Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14701 1162..1686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186031.074841-CDS-P-wetherbeei_contig14701:96..11611683186031.074841-CDS-P-wetherbeei_contig14701:96..1161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14701 97..1161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14701.2.1prot_P-wetherbeei_contig14701.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14701 97..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14701.2.1

>prot_P-wetherbeei_contig14701.2.1 ID=prot_P-wetherbeei_contig14701.2.1|Name=mRNA_P-wetherbeei_contig14701.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=355bp
MMSYPPLAQGTISEFGRNDVPPRGCPGFHPAAGTGGLVLPGPAVPGGGGS
RVGAIGGGMCRSDFVMPPTGSIGPRPGDVGAYSGRYRIVAAQADGVHLRS
PDLAGAVVAATASFTRPMKPEFDPMSPMLTLTPTMVAMAAGLSGFSPAPS
GSTLPAVSGGLVGGGVGRGAGAGRSGDRSVAAASMLPLASVISSAASRKA
ASKTAATLSAITGLNDVAGAKASFGTGRSTRGATAAAAAAAAADSKLLIG
ATGPKLGMAGGSSVGSGAGGGGGGGAGADGGGGAGIGSDTDGDGINAVVA
SAGGSGGGGISGSSAGGGGRPSCGALTRRRTAKAATNVAAATAAPEAPSE
AENL*
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mRNA from alignment at P-wetherbeei_contig14701:2..1686+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14701.2.1 ID=mRNA_P-wetherbeei_contig14701.2.1|Name=mRNA_P-wetherbeei_contig14701.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1685bp|location=Sequence derived from alignment at P-wetherbeei_contig14701:2..1686+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGCGATCGCAGCGTTTGGACGGGGGGAGGAGAAGGTGGCATTGCCAAT
GGCGATGGCGGCAACCGCGGCAGCATTGGCGGCAGCGGCGTCCCAATGAT
GTCATATCCGCCTCTGGCGCAAGGCACCATCAGCGAGTTTGGGCGCAACG
ACGTGCCGCCGAGAGGGTGCCCTGGCTTTCACCCCGCGGCCGGCACTGGC
GGCCTTGTGCTGCCTGGACCGGCCGTGCCCGGCGGCGGTGGCAGCAGAGT
CGGCGCAATTGGCGGCGGCATGTGCCGCTCGGACTTTGTGATGCCGCCCA
CTGGGAGCATCGGGCCGCGGCCGGGCGACGTCGGCGCCTATTCTGGCCGC
TACAGAATAGTGGCCGCGCAGGCCGACGGCGTGCACCTGCGGAGCCCTGA
TTTGGCGGGGGCGGTGGTGGCGGCAACGGCGAGCTTTACGCGGCCGATGA
AGCCTGAGTTCGATCCGATGTCGCCAATGCTCACGTTGACGCCGACTATG
GTCGCCATGGCGGCAGGACTGTCGGGGTTCTCGCCGGCGCCGTCGGGTTC
GACGCTTCCGGCGGTGTCCGGAGGCCTCGTCGGCGGTGGCGTGGGCCGGG
GCGCCGGCGCCGGCCGAAGCGGCGACAGAAGCGTCGCCGCCGCCTCCATG
CTGCCCCTGGCGTCGGTAATTTCCTCCGCGGCATCCAGGAAGGCAGCATC
CAAGACGGCGGCGACGCTCTCAGCAATCACGGGGCTGAACGACGTCGCGG
GCGCAAAGGCGAGCTTCGGCACGGGGCGATCAACACGGGGAGCGACGGCT
GCCGCCGCGGCTGCTGCGGCGGCAGACTCAAAGCTGCTCATTGGCGCCAC
GGGCCCAAAGCTCGGCATGGCTGGCGGGAGCAGCGTCGGCAGCGGCGCCG
GTGGCGGCGGCGGCGGCGGCGCCGGCGCCGATGGCGGTGGCGGCGCCGGC
ATCGGCAGTGACACGGATGGCGATGGCATCAACGCAGTTGTGGCCTCTGC
GGGCGGCAGCGGCGGCGGCGGCATTTCAGGCTCCTCGGCCGGAGGGGGCG
GAAGACCGAGCTGCGGCGCGTTGACGAGAAGGCGAACCGCGAAGGCGGCG
ACCAACGTGGCAGCGGCGACGGCGGCTCCAGAGGCGCCTTCAGAAGCGGA
AAATTTGTAACGCTGTCGCCGGCGCTTATTGCTGCCGTATTTTGTACCTT
CATTAGCAGAATGATTAAGGTGGCGACGAAGGCTCGCAAGCGGGGGGGAG
AGAGGGGCGGGCAGGAGCTCTTTGGCGGTACTAGAGAAGCCCAGCCCGGG
CAAGAAGGGAACGCTGGCGTCGTGTGCGGGTGGCAGACCTGCGAGTTTGC
TGTGCGTGTTTACCTGCCCTTCCTGCATGCCGGCAAGGACGCGAACACAC
CAATGCGGCTGGCAAACATTCCCGCTTGACGAGACGACGCACGGCTGCCG
GCGCGGCGGAGGTGGTGACGGCAGCGATGACGGCAGCGGCAACTGGTGGC
AGCGGCGGCAACCGGCGGCGTCGGCGGCGGGAGCAACCTGCGGTGGCGGC
GGCAGGGGCAACTGGCAGTGGCGGGCGGCGGCAGCTGGCTGCTCGGGTAG
CGCGACAGTGCGGGCGGAAGGATAGAGCACGGCGAAATGAGCGCGCTGGA
AAAAGAAAGTGGGCCGAGGAGGCCCGGTCGGCAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14701:2..1686+

>mRNA_P-wetherbeei_contig14701.2.1 ID=mRNA_P-wetherbeei_contig14701.2.1|Name=mRNA_P-wetherbeei_contig14701.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1065bp|location=Sequence derived from alignment at P-wetherbeei_contig14701:2..1686+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGTCATATCCGCCTCTGGCGCAAGGCACCATCAGCGAGTTTGGGCG
CAACGACGTGCCGCCGAGAGGGTGCCCTGGCTTTCACCCCGCGGCCGGCA
CTGGCGGCCTTGTGCTGCCTGGACCGGCCGTGCCCGGCGGCGGTGGCAGC
AGAGTCGGCGCAATTGGCGGCGGCATGTGCCGCTCGGACTTTGTGATGCC
GCCCACTGGGAGCATCGGGCCGCGGCCGGGCGACGTCGGCGCCTATTCTG
GCCGCTACAGAATAGTGGCCGCGCAGGCCGACGGCGTGCACCTGCGGAGC
CCTGATTTGGCGGGGGCGGTGGTGGCGGCAACGGCGAGCTTTACGCGGCC
GATGAAGCCTGAGTTCGATCCGATGTCGCCAATGCTCACGTTGACGCCGA
CTATGGTCGCCATGGCGGCAGGACTGTCGGGGTTCTCGCCGGCGCCGTCG
GGTTCGACGCTTCCGGCGGTGTCCGGAGGCCTCGTCGGCGGTGGCGTGGG
CCGGGGCGCCGGCGCCGGCCGAAGCGGCGACAGAAGCGTCGCCGCCGCCT
CCATGCTGCCCCTGGCGTCGGTAATTTCCTCCGCGGCATCCAGGAAGGCA
GCATCCAAGACGGCGGCGACGCTCTCAGCAATCACGGGGCTGAACGACGT
CGCGGGCGCAAAGGCGAGCTTCGGCACGGGGCGATCAACACGGGGAGCGA
CGGCTGCCGCCGCGGCTGCTGCGGCGGCAGACTCAAAGCTGCTCATTGGC
GCCACGGGCCCAAAGCTCGGCATGGCTGGCGGGAGCAGCGTCGGCAGCGG
CGCCGGTGGCGGCGGCGGCGGCGGCGCCGGCGCCGATGGCGGTGGCGGCG
CCGGCATCGGCAGTGACACGGATGGCGATGGCATCAACGCAGTTGTGGCC
TCTGCGGGCGGCAGCGGCGGCGGCGGCATTTCAGGCTCCTCGGCCGGAGG
GGGCGGAAGACCGAGCTGCGGCGCGTTGACGAGAAGGCGAACCGCGAAGG
CGGCGACCAACGTGGCAGCGGCGACGGCGGCTCCAGAGGCGCCTTCAGAA
GCGGAAAATTTGTAA
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