mRNA_P-wetherbeei_contig14700.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14700.2.1
Unique NamemRNA_P-wetherbeei_contig14700.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14700.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14700contigP-wetherbeei_contig14700:553..1573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1021
Hectar predicted targeting categoryother localisation
Exons1
Cds size720
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186031.0153627-UTR-P-wetherbeei_contig14700:552..5761683186031.0153627-UTR-P-wetherbeei_contig14700:552..576Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14700 553..576 -
1683186031.0356972-UTR-P-wetherbeei_contig14700:1296..15731683186031.0356972-UTR-P-wetherbeei_contig14700:1296..1573Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14700 1297..1573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186031.0255516-CDS-P-wetherbeei_contig14700:576..12961683186031.0255516-CDS-P-wetherbeei_contig14700:576..1296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14700 577..1296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14700.2.1prot_P-wetherbeei_contig14700.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14700 577..1296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14700.2.1

>prot_P-wetherbeei_contig14700.2.1 ID=prot_P-wetherbeei_contig14700.2.1|Name=mRNA_P-wetherbeei_contig14700.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
MLCPSPRQHDVREASKLCCPCSWTSLSNLELRCQVALPSGSDWAACSGLG
RFSGGAVTEAAGLSAQEIPLWRDHPRAEDVLLSPGPDCSLVRTPARILFF
LTHEQSGYGETTWVAVNVFCKQEQKGEHLMDDATGLYAYYLRATVEVFPA
TFIRHHVQMVHRCVMTSGDGAADAQYCIIAADVTTPGGGSIKGETKAAAG
REQHRGLGRQKLRHGRRNNIYLLNDYFRTYVNGEVDYGW*
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mRNA from alignment at P-wetherbeei_contig14700:553..1573-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14700.2.1 ID=mRNA_P-wetherbeei_contig14700.2.1|Name=mRNA_P-wetherbeei_contig14700.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1021bp|location=Sequence derived from alignment at P-wetherbeei_contig14700:553..1573- (Phaeothamnion wetherbeei SAG_119_79)
AAAAAGTGGCGGTGCCTTCACCGGCGATGAAAGCAGCGGCGCTGGCGAAA
GCGGCGGCCCCTTTGCTGGCGGCGGCGCTGGCGCCGATGTGAGCGCCGCA
TATGCCGGAGCTAAGTGGCCAGCGCGGTTGCGGCGGCACGTCGGCAAGTC
CAACCCCGGCGAAGATGTTGATGTCACGAATGCGGCGCGCGAGGCGGCGG
CCGGTGGCAATAAGGCTTGGCGAGCAGCACTGCGGTTCCCGCTGGGTGCC
GATGAGCTGCTACGATGCTACCAGTCCATGCTGTGCCCAAGTCCCAGGCA
GCATGACGTGCGGGAGGCTTCTAAGCTCTGCTGCCCGTGCTCGTGGACGT
CGCTCAGCAATCTGGAGCTGCGGTGCCAGGTAGCTCTCCCTTCAGGCAGT
GATTGGGCGGCTTGCAGCGGGCTTGGGAGGTTTAGCGGCGGCGCCGTTAC
GGAGGCTGCGGGGCTGAGCGCTCAGGAGATTCCTTTGTGGAGGGATCATC
CGCGGGCGGAGGACGTCCTGCTGTCGCCAGGACCGGACTGCAGTTTGGTG
AGGACGCCGGCGCGGATTCTCTTCTTCTTAACGCACGAGCAGTCAGGTTA
CGGCGAGACAACTTGGGTGGCGGTCAATGTCTTTTGCAAGCAGGAGCAGA
AGGGGGAGCACTTGATGGATGACGCTACCGGCCTTTACGCGTACTATTTA
CGGGCGACTGTGGAGGTGTTTCCAGCGACGTTCATTCGGCACCATGTGCA
GATGGTGCATCGATGCGTGATGACGAGTGGCGACGGAGCGGCTGATGCGC
AGTACTGCATCATTGCCGCCGACGTCACCACCCCTGGTGGAGGGAGCATA
AAGGGAGAGACGAAGGCAGCAGCCGGCCGAGAGCAGCACCGGGGGCTGGG
GCGGCAGAAACTGCGGCACGGCCGGCGTAACAATATCTACCTGTTGAACG
ACTACTTTCGGACGTATGTGAACGGTGAAGTGGACTATGGCTGGTAGGAC
GTACTATAACGCAGCTTCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14700:553..1573-

>mRNA_P-wetherbeei_contig14700.2.1 ID=mRNA_P-wetherbeei_contig14700.2.1|Name=mRNA_P-wetherbeei_contig14700.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig14700:553..1573- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTGCCCAAGTCCCAGGCAGCATGACGTGCGGGAGGCTTCTAAGCT
CTGCTGCCCGTGCTCGTGGACGTCGCTCAGCAATCTGGAGCTGCGGTGCC
AGGTAGCTCTCCCTTCAGGCAGTGATTGGGCGGCTTGCAGCGGGCTTGGG
AGGTTTAGCGGCGGCGCCGTTACGGAGGCTGCGGGGCTGAGCGCTCAGGA
GATTCCTTTGTGGAGGGATCATCCGCGGGCGGAGGACGTCCTGCTGTCGC
CAGGACCGGACTGCAGTTTGGTGAGGACGCCGGCGCGGATTCTCTTCTTC
TTAACGCACGAGCAGTCAGGTTACGGCGAGACAACTTGGGTGGCGGTCAA
TGTCTTTTGCAAGCAGGAGCAGAAGGGGGAGCACTTGATGGATGACGCTA
CCGGCCTTTACGCGTACTATTTACGGGCGACTGTGGAGGTGTTTCCAGCG
ACGTTCATTCGGCACCATGTGCAGATGGTGCATCGATGCGTGATGACGAG
TGGCGACGGAGCGGCTGATGCGCAGTACTGCATCATTGCCGCCGACGTCA
CCACCCCTGGTGGAGGGAGCATAAAGGGAGAGACGAAGGCAGCAGCCGGC
CGAGAGCAGCACCGGGGGCTGGGGCGGCAGAAACTGCGGCACGGCCGGCG
TAACAATATCTACCTGTTGAACGACTACTTTCGGACGTATGTGAACGGTG
AAGTGGACTATGGCTGGTAG
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