mRNA_P-wetherbeei_contig1039.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1039.1.1
Unique NamemRNA_P-wetherbeei_contig1039.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: A0A1V9ZPJ7_9STRA (Sodium/potassium/calcium exchanger 4-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPJ7_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.450e-36
Identity = 76/151 (50.33%), Postives = 108/151 (71.52%), Query Frame = 1
Query:    7 ATASLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTDL---SLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
            + A LLY+FL LAI C+DYLVP IE++C K KIP+EAAGA  LAFGS+APEI++NA AT EG+ +    SL A+ GSA+ AF +IP++CAL++    GL +S  P++RD++ Y  +L LL  I+   ++   ++ +LCSVY  YML++ VP
Sbjct:   38 SVAGLLYIFLGLAIVCDDYLVPAIETLCEKLKIPEEAAGASFLAFGSAAPEILLNAVATAEGQLESMESSLSAIQGSAIIAFALIPSLCALVA--PNGLVVSWGPMVRDSLVYIVSLGLLVRIMTDSAISVKESTMLCSVYVIYMLMIFVP 186          
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: A0A067CBJ6_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBJ6_SAPPC)

HSP 1 Score: 137 bits (346), Expect = 8.060e-36
Identity = 78/149 (52.35%), Postives = 104/149 (69.80%), Query Frame = 1
Query:   13 ASLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTDL---SLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
            A LLY+FL LAI C+DYLVP IE++C K KIP+EAAGA  LAFGS+APEI++NA AT EG+ +    SL A+ GSA+ AF +IPA+CAL+S     LA+S  P++RD++ Y  +L  L  I+    V   ++ LLCS+Y  YML + VP
Sbjct:   43 AGLLYIFLGLAIVCDDYLVPAIETLCEKLKIPEEAAGASFLAFGSAAPEILLNAVATAEGQIESMESSLSAIQGSAIIAFALIPALCALVSPTP--LAVSWGPVVRDSLAYIFSLGALVYIMVDSVVSAWNSALLCSIYVLYMLAIFVP 189          
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: A0A485L3K3_9STRA (Aste57867_15514 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3K3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 3.440e-35
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 1
Query:   16 SLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTDL---SLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
            +LLY+FL LAI C+DYLVP IE++C K KIP+EAAGA  LAFGS+APEI++NA AT EGK +    SL A+LGSA+ AF +IPA+C+L+S     L +S  P+IRD+V Y  +L  L  ++    V T  + LL +VY  YMLV+ VP
Sbjct:   54 ALLYIFLGLAIVCDDYLVPAIETLCEKLKIPEEAAGASFLAFGSAAPEILLNAVATAEGKLESMESSLSAILGSAIIAFALIPALCSLVSPTT--LTISWGPMIRDSVVYILSLGTLVYVMQDSVVDTTQSALLVAVYVGYMLVIYVP 199          
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: W4FLY7_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLY7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.600e-35
Identity = 78/148 (52.70%), Postives = 104/148 (70.27%), Query Frame = 1
Query:   16 SLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTDL---SLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
            +LLYVFL LAI C+DYLVP IE++C K KIP+EAAGA  LAFGS+APEI++NA AT EGK +    SL A+LGSA+ AF +IPA+C L++  +  L +S  P+IRD++ Y  +L  L  ++    VGT  + LL  VY  YML++ VP
Sbjct:   54 ALLYVFLGLAIVCDDYLVPSIETLCEKLKIPEEAAGASFLAFGSAAPEILLNAVATAEGKIEAMESSLSAILGSAIIAFALIPALCTLVAPTS--LMISWAPMIRDSMVYIASLGTLVYVMNDSQVGTWQSGLLILVYVGYMLIIFVP 199          
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: A0A425CAW4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CAW4_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.480e-34
Identity = 78/148 (52.70%), Postives = 104/148 (70.27%), Query Frame = 1
Query:   16 SLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTDL---SLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
            +LLYVFL LAI C+DYLVP IE++C K KIP+EAAGA  LAFGS+APEI++NA AT EGK +    SL A+LGSA+ AF +IPA+C L++  +  L +S  P+IRD++ Y  +L  L  ++    VGT  + LL  VY  YML++ VP
Sbjct:  228 ALLYVFLGLAIVCDDYLVPSIETLCEKLKIPEEAAGASFLAFGSAAPEILLNAVATAEGKIEAMESSLSAILGSAIIAFALIPALCTLVAPTS--LMISWAPMIRDSMVYIASLGTLVYVMNDSQVGTWQSGLLILVYVGYMLIIFVP 373          
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: A0A6G0X5P2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5P2_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.510e-34
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1
Query:    7 ATASLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTDL---SLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
            A A+LLY+FL LAI C+DYLVP IE++C K KIP+EAAGA  LAFGS+APEI++NA AT EGK +    SL A+LGSA+ AF +IPA+CAL++     L++S  P++RD+V Y  +L+ L  ++    V   ++ LL  VY  Y+L++ +P
Sbjct:   48 AIAALLYIFLGLAIVCDDYLVPAIETLCEKLKIPEEAAGASFLAFGSAAPEILLNAVATGEGKIESMESSLSAILGSAIIAFALIPALCALVAPT--ALSISWGPMVRDSVVYIISLSTLVYVMQDSLVNVWESGLLVGVYFGYLLLIYIP 196          
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: A0A024UL45_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UL45_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.770e-33
Identity = 76/148 (51.35%), Postives = 103/148 (69.59%), Query Frame = 1
Query:   16 SLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTDL---SLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
            SLLY+FL LAI C+DYLVP IE++C K KIP+EAAGA  LAFGS+APEI++NA AT EGK +    SL A+LGSA+ AF +IPA+CAL++  +  L +S  P+IRD+  Y  ++  L  ++    V +  + LL  VY  YML++ VP
Sbjct:   53 SLLYIFLGLAIVCDDYLVPAIETLCEKLKIPEEAAGASFLAFGSAAPEILLNAVATAEGKIESMESSLSAILGSAIIAFALIPALCALVAPTS--LTISWGPMIRDSTVYIASVGTLVYVMNDSLVDSWQSGLLILVYVGYMLMIFVP 198          
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: A0A1V9ZDS4_9STRA (Sodium/potassium/calcium exchanger 4-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDS4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.910e-33
Identity = 75/148 (50.68%), Postives = 102/148 (68.92%), Query Frame = 1
Query:   16 SLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTDL---SLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
             LLY+FL LAI C+DYLVP IE++C K KIP+EAAGA  LAFGS+APEI++NA AT EG+ +    SL A+ GSA+ AF +IPA+CAL+S     LA+S  P+ RD++ Y  +L  L   +   +V   D+ LLC +Y  Y+L++ VP
Sbjct:   39 GLLYLFLGLAIVCDDYLVPAIETLCEKLKIPEEAAGASFLAFGSAAPEILLNAVATAEGQLESMESSLSAIQGSAIIAFALIPALCALVS--PSSLAVSWGPMARDSLVYIISLGALVYTMRDSNVTAWDSALLCIIYLVYLLLIFVP 184          
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: A0A3R7D3C7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D3C7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 6.810e-33
Identity = 76/148 (51.35%), Postives = 103/148 (69.59%), Query Frame = 1
Query:   16 SLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTDL---SLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
            SLLY+FL LAI C+DYLVP IE++C K KIP+EAAGA  LAFGS+APEI++NA AT EGK +    SL A+LGSA+ AF +IPA+CAL++  +  L +S  P+IRD+  Y  ++  L  ++    V +  + LL  VY  YML++ VP
Sbjct:  410 SLLYIFLGLAIVCDDYLVPAIETLCEKLKIPEEAAGASFLAFGSAAPEILLNAVATAEGKIESMESSLSAILGSAIIAFALIPALCALVAPTS--LTISWGPMIRDSTVYIASVGTLVYVMNDSLVDSWQSGLLILVYVGYMLIIFVP 555          
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Match: A0A485KU47_9STRA (Aste57867_11683 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KU47_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.050e-30
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 1
Query:    7 ATASLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSSAPEIMMNATATLEGKTD---LSLPAVLGSAMFAFGMIPAICALISGVNGGLALSPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP 450
            +T  LL +FL LAI C+DYLVP IE +C +  IPD+AAGA  LAFGS+APEI++NA AT EG+ +    ++ A+ GSAM AF +IPA+C L+  ++  LA+S  P++RD+  Y  +L  L  ++    V   +AL+LC +Y  Y+LV+ +P
Sbjct:   49 STGGLLLLFLGLAIICDDYLVPAIELLCERLSIPDDAAGASFLAFGSAAPEIVLNAVATAEGRLESMEATVSAIQGSAMIAFAVIPALCVLV--ISTPLAVSWAPMLRDSGAYILSLGALVVVMHDSVVTAVEALVLCGIYVVYLLVIFLP 197          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1039.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9ZPJ7_9STRA1.450e-3650.33Sodium/potassium/calcium exchanger 4-like n=1 Tax=... [more]
A0A067CBJ6_SAPPC8.060e-3652.35Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485L3K3_9STRA3.440e-3553.38Aste57867_15514 protein n=1 Tax=Aphanomyces stella... [more]
W4FLY7_9STRA4.600e-3552.70Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A425CAW4_9STRA2.480e-3452.70Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0X5P2_9STRA6.510e-3450.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UL45_9STRA1.770e-3351.35Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9ZDS4_9STRA5.910e-3350.68Sodium/potassium/calcium exchanger 4-like n=1 Tax=... [more]
A0A3R7D3C7_9STRA6.810e-3351.35Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KU47_9STRA2.050e-3046.36Aste57867_11683 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1039contigP-wetherbeei_contig1039:291..749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008613542.1
PFAMsNa_Ca_ex
Model size459
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.37e-35
EggNOG OGsCOG0530@1|root,KOG1307@2759|Eukaryota
Descriptioncalcium, potassium:sodium antiporter activity
Cds size459
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.7916007-CDS-P-wetherbeei_contig1039:290..7491683185866.7916007-CDS-P-wetherbeei_contig1039:290..749Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1039 291..749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1039.1.1prot_P-wetherbeei_contig1039.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1039 291..749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1039.1.1

>prot_P-wetherbeei_contig1039.1.1 ID=prot_P-wetherbeei_contig1039.1.1|Name=mRNA_P-wetherbeei_contig1039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
LFATASLLYVFLALAITCEDYLVPCIESVCAKGKIPDEAAGALLLAFGSS
APEIMMNATATLEGKTDLSLPAVLGSAMFAFGMIPAICALISGVNGGLAL
SPWPIIRDTVCYAGALALLCAILAKPSVGTGDALLLCSVYGAYMLVVLVP
FLV
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mRNA from alignment at P-wetherbeei_contig1039:291..749-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1039.1.1 ID=mRNA_P-wetherbeei_contig1039.1.1|Name=mRNA_P-wetherbeei_contig1039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig1039:291..749- (Phaeothamnion wetherbeei SAG_119_79)
CTCTTCGCCACGGCGTCGCTGCTGTACGTCTTTCTGGCCCTGGCCATCAC GTGCGAAGACTACCTGGTGCCGTGCATTGAGAGCGTGTGCGCCAAAGGGA AGATCCCCGACGAGGCAGCGGGGGCGCTCCTGCTGGCCTTTGGCTCGAGC GCGCCGGAGATCATGATGAACGCCACCGCCACACTGGAAGGCAAGACCGA CCTCTCGCTCCCGGCGGTGCTCGGCTCCGCCATGTTCGCTTTCGGCATGA TCCCGGCCATCTGCGCGCTCATCTCGGGAGTGAACGGCGGCCTAGCGCTC AGTCCCTGGCCGATCATCCGCGACACCGTCTGCTACGCGGGGGCCCTGGC GCTGCTGTGCGCCATCCTCGCCAAGCCGAGCGTGGGCACCGGCGACGCGC TGCTTCTCTGCTCCGTCTACGGCGCCTACATGCTGGTGGTCCTCGTGCCG TTCCTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1039:291..749-

>mRNA_P-wetherbeei_contig1039.1.1 ID=mRNA_P-wetherbeei_contig1039.1.1|Name=mRNA_P-wetherbeei_contig1039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig1039:291..749- (Phaeothamnion wetherbeei SAG_119_79)
CTCTTCGCCACGGCGTCGCTGCTGTACGTCTTTCTGGCCCTGGCCATCAC
GTGCGAAGACTACCTGGTGCCGTGCATTGAGAGCGTGTGCGCCAAAGGGA
AGATCCCCGACGAGGCAGCGGGGGCGCTCCTGCTGGCCTTTGGCTCGAGC
GCGCCGGAGATCATGATGAACGCCACCGCCACACTGGAAGGCAAGACCGA
CCTCTCGCTCCCGGCGGTGCTCGGCTCCGCCATGTTCGCTTTCGGCATGA
TCCCGGCCATCTGCGCGCTCATCTCGGGAGTGAACGGCGGCCTAGCGCTC
AGTCCCTGGCCGATCATCCGCGACACCGTCTGCTACGCGGGGGCCCTGGC
GCTGCTGTGCGCCATCCTCGCCAAGCCGAGCGTGGGCACCGGCGACGCGC
TGCTTCTCTGCTCCGTCTACGGCGCCTACATGCTGGTGGTCCTCGTGCCG
TTCCTCGTC
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