mRNA_P-wetherbeei_contig147.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig147.7.1
Unique NamemRNA_P-wetherbeei_contig147.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig147.7.1 vs. uniprot
Match: D8LIM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM1_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.080e-49
Identity = 152/402 (37.81%), Postives = 189/402 (47.01%), Query Frame = 1 
Query:  322 EMLHDLERFR---ESRIADEDCEFALVLRPDDEYRDAVELLELALDLDGIDAAGGAL--PLGVTESKRQGAARLRESFGGDWPLRQPPEAIAAAAEAATGGEGFXXXXXXXXXXEGGDWGRADNIGGGSXXXXXXXXNMRFNAATIAIGAVPSPSAPPTPPRSGGTVQRGRNAGAAGGGCGGQRVRLSLLEELQEEEEGHGRMTERRLQELQRXXXXRLARFVHLLLQGIIVRRHAPYRTCKQIVLQSIDGGRTVTWRPLLGHAAD-----------RRLLASFRH-----RLEHRNDSGALKASSMFGVLPATDPDPDQPGFFGTRALRLSEDIPNPARTFSVLYVDGNDGGGGTAGRADSGGEGFAGTFFGIGGGGRHGEVV-TLDLECDQDIDYALLFQ 1461
            + + +L R+R   E    +++ EFALVL P+DEYRDAVE+LELALDL   D  GG    P  + + KR G    R+  GG      PP                                                                              V+ G + G  G G GG+R RLSLL++LQEEE   GR+T RR +EL+R    RL  FVH + +G+IVRRH  +RTC QIVLQS D  RT++W+PLL  AAD             L  S R      RL  +N +  +K + +  VLPATDPDP QPGFFGTRALRLSEDIPNP+RTFS+LY D                       +G G  G   +V  TLDLEC  D  YA+LFQ
Sbjct:    6 DFIRELTRYRSGAERAARNDEYEFALVLNPNDEYRDAVEVLELALDLG--DGGGGVTTSPQKLDKVKRSGPGSGRKGGGG------PP-----------------------------------------------------------------------------VVRPGLSEGLEGVG-GGRRTRLSLLDDLQEEE---GRLTSRRKKELERKKKHRLFHFVHKMQEGVIVRRHLAHRTCDQIVLQSTDDCRTISWKPLL--AADGGAXXXXXXAISGLFQSLRRGAAGSRLSKKNRAECVKTAHIAVVLPATDPDPSQPGFFGTRALRLSEDIPNPSRTFSLLYGD-----------------------WGRGHCGMEDQVQGTLDLECPDDGMYAMLFQ 293
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig147.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIM1_ECTSI1.080e-4937.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig147contigP-wetherbeei_contig147:7867..9541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1507
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004370.1
Cds size1506
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186030.8372364-CDS-P-wetherbeei_contig147:7867..83381683186030.8372364-CDS-P-wetherbeei_contig147:7867..8338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig147 7868..8338 -
1683186030.8485186-CDS-P-wetherbeei_contig147:8506..95411683186030.8485186-CDS-P-wetherbeei_contig147:8506..9541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig147 8507..9541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig147.7.1prot_P-wetherbeei_contig147.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig147 7868..9541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig147.7.1

>prot_P-wetherbeei_contig147.7.1 ID=prot_P-wetherbeei_contig147.7.1|Name=mRNA_P-wetherbeei_contig147.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=502bp
RASQPPRPSPQPRAQVSPSPQSSPPRSSPPPPQQQQHARWAPASSPGDVW
STGRRSTDRRVDGDGSDSDLSPPPDVLRARPGRIDAGGGDVGGDIGDGSR
RRGPVEREMLHDLERFRESRIADEDCEFALVLRPDDEYRDAVELLELALD
LDGIDAAGGALPLGVTESKRQGAARLRESFGGDWPLRQPPEAIAAAAEAA
TGGEGFSAAATAATAPEGGDWGRADNIGGGSGNGSGGSGNMRFNAATIAI
GAVPSPSAPPTPPRSGGTVQRGRNAGAAGGGCGGQRVRLSLLEELQEEEE
GHGRMTERRLQELQRRRRRRLARFVHLLLQGIIVRRHAPYRTCKQIVLQS
IDGGRTVTWRPLLGHAADRRLLASFRHRLEHRNDSGALKASSMFGVLPAT
DPDPDQPGFFGTRALRLSEDIPNPARTFSVLYVDGNDGGGGTAGRADSGG
EGFAGTFFGIGGGGRHGEVVTLDLECDQDIDYALLFQGFILLHMRAMEEA
AV
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mRNA from alignment at P-wetherbeei_contig147:7867..9541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig147.7.1 ID=mRNA_P-wetherbeei_contig147.7.1|Name=mRNA_P-wetherbeei_contig147.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1675bp|location=Sequence derived from alignment at P-wetherbeei_contig147:7867..9541- (Phaeothamnion wetherbeei SAG_119_79)
CGGGCATCGCAGCCGCCACGGCCATCACCGCAGCCGCGGGCGCAGGTGTC
GCCGTCGCCGCAATCGTCGCCGCCGCGGTCGTCGCCGCCGCCGCCGCAAC
AACAGCAGCATGCGAGATGGGCACCGGCGTCCAGCCCGGGTGACGTGTGG
AGCACCGGCCGGCGAAGCACGGACCGCCGAGTTGACGGCGACGGAAGCGA
TTCAGACCTTAGCCCCCCGCCGGATGTCTTGCGGGCGCGCCCCGGCCGCA
TTGATGCTGGCGGCGGCGATGTTGGCGGCGATATTGGCGACGGCAGCCGC
CGCCGCGGGCCAGTGGAGCGCGAGATGTTGCACGACCTGGAACGCTTCCG
CGAGAGTCGCATCGCCGACGAGGACTGCGAGTTTGCACTTGTGCTGCGGC
CAGACGACGAGTACCGCGACGCCGTTGAGCTGCTGGAGCTGGCGCTCGAC
CTGGACGGCATCGATGCGGCGGGGGGCGCGCTGCCGTTGGGCGTCACGGA
GAGCAAGCGGCAGGGGGCGGCGCGGCTGCGGGAGTCATTTGGAGGCGACT
GGCCGCTGCGGCAGCCGCCCGAGGCCATCGCAGCCGCGGCGGAAGCGGCC
ACCGGTGGTGAGGGTTTTTCCGCGGCGGCAACCGCCGCGACAGCGCCAGA
AGGCGGAGACTGGGGTCGGGCGGACAACATTGGAGGCGGCAGTGGCAACG
GAAGCGGTGGCAGCGGCAATATGCGATTCAATGCCGCAACGATTGCCATT
GGAGCCGTACCGTCGCCGTCAGCGCCGCCCACCCCGCCGCGGAGCGGCGG
CACGGTGCAGCGCGGACGGAACGCGGGCGCGGCTGGCGGCGGCTGCGGGG
GACAGCGGGTCCGCCTGTCGCTTCTGGAAGAGCTGCAGGAGGAGGAGGAA
GGCCACGGCCGCATGACGGAGCGCCGCCTCCAGGAGCTGCAGCGGCGGCG
GCGACGGCGGCTGGCGCGGTTTGTCCACCTGCTGTTGCAGGGCATCATCG
TGCGGCGTCATGCCCCGTACAGGACCTGCAAGCAGGTGCGGGAGTGAACG
GAAGCGGCCTGTTTCTCGACTTTCTTGCTGTTGTTGCTTTCTTTAGCTTT
GCATGGAAAAAGAAAAGTGTCTGCGTAGTCTGTCGCAAATTGAAGGATTT
TTCTGTTGCCCAATTTGCCTTTCGATTCCTGCTCCTCCCGCTCCTAACAC
CAGATTGTGCTGCAAAGCATTGACGGCGGGCGCACGGTCACGTGGCGGCC
TCTACTCGGCCACGCCGCCGATAGGCGCCTCCTGGCGTCCTTCCGTCACC
GCTTGGAGCACCGAAACGACAGCGGGGCACTCAAAGCGTCCAGCATGTTT
GGCGTCCTACCCGCAACCGATCCGGATCCGGATCAGCCGGGTTTCTTCGG
CACGCGCGCGCTCCGCCTTTCCGAGGACATTCCCAACCCGGCGCGGACCT
TCAGCGTGCTGTATGTCGATGGCAATGACGGCGGCGGCGGCACAGCCGGT
CGCGCCGACAGCGGCGGCGAGGGCTTTGCCGGCACGTTCTTTGGCATCGG
TGGCGGCGGCAGGCACGGGGAGGTGGTGACGCTCGACCTGGAATGCGACC
AGGACATAGACTACGCCCTTCTCTTCCAGGGCTTCATCCTGCTGCACATG
CGGGCGATGGAGGAGGCTGCCGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig147:7867..9541-

>mRNA_P-wetherbeei_contig147.7.1 ID=mRNA_P-wetherbeei_contig147.7.1|Name=mRNA_P-wetherbeei_contig147.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1506bp|location=Sequence derived from alignment at P-wetherbeei_contig147:7867..9541- (Phaeothamnion wetherbeei SAG_119_79)
CGGGCATCGCAGCCGCCACGGCCATCACCGCAGCCGCGGGCGCAGGTGTC
GCCGTCGCCGCAATCGTCGCCGCCGCGGTCGTCGCCGCCGCCGCCGCAAC
AACAGCAGCATGCGAGATGGGCACCGGCGTCCAGCCCGGGTGACGTGTGG
AGCACCGGCCGGCGAAGCACGGACCGCCGAGTTGACGGCGACGGAAGCGA
TTCAGACCTTAGCCCCCCGCCGGATGTCTTGCGGGCGCGCCCCGGCCGCA
TTGATGCTGGCGGCGGCGATGTTGGCGGCGATATTGGCGACGGCAGCCGC
CGCCGCGGGCCAGTGGAGCGCGAGATGTTGCACGACCTGGAACGCTTCCG
CGAGAGTCGCATCGCCGACGAGGACTGCGAGTTTGCACTTGTGCTGCGGC
CAGACGACGAGTACCGCGACGCCGTTGAGCTGCTGGAGCTGGCGCTCGAC
CTGGACGGCATCGATGCGGCGGGGGGCGCGCTGCCGTTGGGCGTCACGGA
GAGCAAGCGGCAGGGGGCGGCGCGGCTGCGGGAGTCATTTGGAGGCGACT
GGCCGCTGCGGCAGCCGCCCGAGGCCATCGCAGCCGCGGCGGAAGCGGCC
ACCGGTGGTGAGGGTTTTTCCGCGGCGGCAACCGCCGCGACAGCGCCAGA
AGGCGGAGACTGGGGTCGGGCGGACAACATTGGAGGCGGCAGTGGCAACG
GAAGCGGTGGCAGCGGCAATATGCGATTCAATGCCGCAACGATTGCCATT
GGAGCCGTACCGTCGCCGTCAGCGCCGCCCACCCCGCCGCGGAGCGGCGG
CACGGTGCAGCGCGGACGGAACGCGGGCGCGGCTGGCGGCGGCTGCGGGG
GACAGCGGGTCCGCCTGTCGCTTCTGGAAGAGCTGCAGGAGGAGGAGGAA
GGCCACGGCCGCATGACGGAGCGCCGCCTCCAGGAGCTGCAGCGGCGGCG
GCGACGGCGGCTGGCGCGGTTTGTCCACCTGCTGTTGCAGGGCATCATCG
TGCGGCGTCATGCCCCGTACAGGACCTGCAAGCAGATTGTGCTGCAAAGC
ATTGACGGCGGGCGCACGGTCACGTGGCGGCCTCTACTCGGCCACGCCGC
CGATAGGCGCCTCCTGGCGTCCTTCCGTCACCGCTTGGAGCACCGAAACG
ACAGCGGGGCACTCAAAGCGTCCAGCATGTTTGGCGTCCTACCCGCAACC
GATCCGGATCCGGATCAGCCGGGTTTCTTCGGCACGCGCGCGCTCCGCCT
TTCCGAGGACATTCCCAACCCGGCGCGGACCTTCAGCGTGCTGTATGTCG
ATGGCAATGACGGCGGCGGCGGCACAGCCGGTCGCGCCGACAGCGGCGGC
GAGGGCTTTGCCGGCACGTTCTTTGGCATCGGTGGCGGCGGCAGGCACGG
GGAGGTGGTGACGCTCGACCTGGAATGCGACCAGGACATAGACTACGCCC
TTCTCTTCCAGGGCTTCATCCTGCTGCACATGCGGGCGATGGAGGAGGCT
GCCGTG
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