mRNA_P-wetherbeei_contig1466.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1466.4.1
Unique NamemRNA_P-wetherbeei_contig1466.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1466.4.1 vs. uniprot
Match: D7FNU8_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU8_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.140e-9
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 ETNKSDIAFSARGSLRQVNEYDIVRDLGHGATAEVKLCQRRTPLIAGSEPELFAVKIVDRGSLVKRTRANAFSRR 225
            ET  + I  SA G L+Q+NEY+ +RDLG GATAEVKLC RR     G E E  AVK+ ++  L ++ R  AF RR
Sbjct:    6 ETMTAAIELSADGFLQQINEYECIRDLGSGATAEVKLC-RRVDNQTGEE-EWVAVKVFNKSLLNRQARGFAFGRR 78
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BLAST of mRNA_P-wetherbeei_contig1466.4.1 vs. uniprot
Match: A0A6H5JFG3_9PHAE (Protein kinase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.650e-8
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   19 IAFSARGSLRQVNEYDIVRDLGHGATAEVKLCQRRTPLIAGSEPELFAVKIVDRGSLVKRTRANAFSRR 225
            I  SA G L+Q+NEY+ +RDLG GATAEVKLC RR     G E E  AVK+ ++  + ++ R  AF RR
Sbjct:    5 IELSADGFLQQINEYECIRDLGSGATAEVKLC-RRVDKQTGEE-EWVAVKVFNKSLINRQARGFAFGRR 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1466.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNU8_ECTSI4.140e-950.67Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JFG3_9PHAE2.650e-850.72Protein kinase domain-containing protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1466contigP-wetherbeei_contig1466:5572..6439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNU8
PFAMsPkinase
Model size455
Max annot lvl2759|Eukaryota
KEGG koko:K07359
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.79e-10
EggNOG OGsKOG0585@1|root,KOG0585@2759|Eukaryota
EC2.7.11.17
Descriptionpeptidyl-threonine phosphorylation
Cds size453
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.1984296-CDS-P-wetherbeei_contig1466:5571..56081683186029.1984296-CDS-P-wetherbeei_contig1466:5571..5608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1466 5572..5608 +
1683186029.2130725-CDS-P-wetherbeei_contig1466:5796..59181683186029.2130725-CDS-P-wetherbeei_contig1466:5796..5918Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1466 5797..5918 +
1683186029.221681-CDS-P-wetherbeei_contig1466:6144..64381683186029.221681-CDS-P-wetherbeei_contig1466:6144..6438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1466 6145..6438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1466.4.1prot_P-wetherbeei_contig1466.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1466 5572..6438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1466.4.1

>prot_P-wetherbeei_contig1466.4.1 ID=prot_P-wetherbeei_contig1466.4.1|Name=mRNA_P-wetherbeei_contig1466.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
ETNKSDIAFSARGSLRQVNEYDIVRDLGHGATAEVKLCQRRTPLIAGSEP
ELFAVKIVDRGSLVKRTRANAFSRRPGRTPPPKRPAVGPAVVGCAGGNQT
PSPAGGSDNGGGASSSPGGASPSPQQSPPRSGDANGHRNGCRNSHEKGGN
R
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mRNA from alignment at P-wetherbeei_contig1466:5572..6439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1466.4.1 ID=mRNA_P-wetherbeei_contig1466.4.1|Name=mRNA_P-wetherbeei_contig1466.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=868bp|location=Sequence derived from alignment at P-wetherbeei_contig1466:5572..6439+ (Phaeothamnion wetherbeei SAG_119_79)
GAGACCAACAAGTCGGACATTGCCTTCTCAGCTCGAGGTGAGAGAAAATT
AAATGCAAAGCAGTCAGCGCGTAAAGAGATTGCTGAAGCAGCAATTTGCA
ACAATGGATGCTAGAGGTCATTCGTGAAGGAATAGTTTATAACATTGTTA
ATCCATTTGTTGGTCGCTTTTCTACCCCGTTGTCCTGACCCGTCGCTCGA
ATCCTTTTGCACTGCGCCGCCGCAGGTTCACTCCGGCAGGTCAATGAGTA
CGACATCGTCCGCGACCTCGGCCACGGCGCGACGGCGGAAGTGAAGCTCT
GCCAGCGGCGGACGCCCCTCATCGCAGGATCGGAGCCCGAGCTTTTTGTA
AGTGCGCAGCCGGCGGCAAAAACCCATGACCACCTCTTCGACGTCATGTT
CGCTTTTGCGCCGCTTGCTTTACTCTTGAAACCTTTTTTTTCAAGAGATC
GAACACCGGATGAATATCTGCGTTGTGCCTGTATCAGGAATAGCTCTTTT
TTAATTATGAATCCCAGTCAGGACACAATCTGACTTCCCGTTTCTTACCT
TCCTGCAAATGCGTTGCTCGCAGGCAGTGAAAATCGTCGACCGCGGGTCG
CTCGTGAAGCGGACGCGTGCCAACGCTTTCAGCCGCCGGCCGGGACGGAC
TCCGCCCCCCAAACGGCCCGCTGTCGGCCCCGCCGTTGTCGGCTGCGCCG
GCGGCAACCAAACACCATCTCCGGCTGGTGGTAGCGACAATGGCGGCGGC
GCTAGCAGCAGCCCAGGCGGCGCCAGCCCTTCTCCACAACAATCGCCGCC
CCGCAGCGGCGATGCAAACGGTCACCGAAACGGCTGCAGAAACAGCCACG
AAAAGGGCGGAAATAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1466:5572..6439+

>mRNA_P-wetherbeei_contig1466.4.1 ID=mRNA_P-wetherbeei_contig1466.4.1|Name=mRNA_P-wetherbeei_contig1466.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig1466:5572..6439+ (Phaeothamnion wetherbeei SAG_119_79)
GAGACCAACAAGTCGGACATTGCCTTCTCAGCTCGAGGTTCACTCCGGCA
GGTCAATGAGTACGACATCGTCCGCGACCTCGGCCACGGCGCGACGGCGG
AAGTGAAGCTCTGCCAGCGGCGGACGCCCCTCATCGCAGGATCGGAGCCC
GAGCTTTTTGCAGTGAAAATCGTCGACCGCGGGTCGCTCGTGAAGCGGAC
GCGTGCCAACGCTTTCAGCCGCCGGCCGGGACGGACTCCGCCCCCCAAAC
GGCCCGCTGTCGGCCCCGCCGTTGTCGGCTGCGCCGGCGGCAACCAAACA
CCATCTCCGGCTGGTGGTAGCGACAATGGCGGCGGCGCTAGCAGCAGCCC
AGGCGGCGCCAGCCCTTCTCCACAACAATCGCCGCCCCGCAGCGGCGATG
CAAACGGTCACCGAAACGGCTGCAGAAACAGCCACGAAAAGGGCGGAAAT
AGA
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