mRNA_P-wetherbeei_contig14653.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14653.1.1
Unique NamemRNA_P-wetherbeei_contig14653.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: A0A521MFE0_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MFE0_9HYPH)

HSP 1 Score: 321 bits (822), Expect = 2.150e-110
Identity = 161/178 (90.45%), Postives = 168/178 (94.38%), Query Frame = 1
Query:    4 MKRRFLVSALLLMVPVMARAQPSDWQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            MKRRFLV +LL  VP+MA AQP+DWQTVVGSDLRFRLEMPAPA KT AAEKEKGH GERVAWQSKRDDELFDFDYVDY+ GWFSSRDTKE+ARDLGRGEAEKAFPRARFKYVLDEPV LQGWDGYALDIEDTN SRVMMRTYIVKDRLYR+LVTTKGDMKSM+AATRFLESLRLAETR
Sbjct:    1 MKRRFLVFSLLT-VPLMASAQPADWQTVVGSDLRFRLEMPAPAAKTTAAEKEKGHAGERVAWQSKRDDELFDFDYVDYDAGWFSSRDTKEVARDLGRGEAEKAFPRARFKYVLDEPVALQGWDGYALDIEDTNGSRVMMRTYIVKDRLYRLLVTTKGDMKSMSAATRFLESLRLAETR 177          
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: A0A1F2ZSW9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F2ZSW9_9PROT)

HSP 1 Score: 310 bits (794), Expect = 5.450e-106
Identity = 156/181 (86.19%), Postives = 163/181 (90.06%), Query Frame = 1
Query:    4 MKRRFLVSALLL---MVPVMARAQPSDWQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            MKRR +V ALL+   + P++A AQP+DWQTVVGSDLRFRLEMPAPA K  AAEKEKGH GERVAW SKRDDELFDFDYVDYEP WFSSRDTK MARDLGRGEAEKAFPR RFKYVLDEPV LQGWDGYALDIEDTN SRVMMRTYIVKDRLYRMLVTTKGD KSM+AATRFLESLRLAETR
Sbjct:    6 MKRRLIVLALLMAPAVAPIVAGAQPADWQTVVGSDLRFRLEMPAPAAKITAAEKEKGHAGERVAWASKRDDELFDFDYVDYEPAWFSSRDTKVMARDLGRGEAEKAFPRVRFKYVLDEPVTLQGWDGYALDIEDTNGSRVMMRTYIVKDRLYRMLVTTKGDTKSMSAATRFLESLRLAETR 186          
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: UPI001E35E72F (hypothetical protein n=2 Tax=Reyranella TaxID=445219 RepID=UPI001E35E72F)

HSP 1 Score: 275 bits (703), Expect = 3.480e-92
Identity = 137/179 (76.54%), Postives = 155/179 (86.59%), Query Frame = 1
Query:    1 SMKRRFLVSALLLMVPVMARAQPSDWQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            ++KRR LV A+L  +P+ A+AQP++WQTVVG DLRFRLEMPAPANKT+AAEKEKGH GERVAW SKR+ E+FDFDYVDYEPGWFS++D+KEMAR+LGRGEAEKAFPR +FKYVLDEPV LQGWDGYALDI D   + VMMRTYIVKDRLYR+LVT K D  S  AA RFL SLRLAETR
Sbjct:    4 NLKRRSLV-AMLAALPLAAQAQPAEWQTVVGPDLRFRLEMPAPANKTSAAEKEKGHAGERVAWASKRNGEMFDFDYVDYEPGWFSAKDSKEMARELGRGEAEKAFPRNKFKYVLDEPVTLQGWDGYALDIADHENALVMMRTYIVKDRLYRLLVTAKNDEDSRAAANRFLASLRLAETR 181          
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: A0A1H8NS27_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8NS27_9PROT)

HSP 1 Score: 271 bits (693), Expect = 1.080e-90
Identity = 134/178 (75.28%), Postives = 150/178 (84.27%), Query Frame = 1
Query:    4 MKRRFLVSALLLMVPVMARAQPSDWQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            MKRR  V AL + VP+ A+AQP++WQT+VG DLRFRLEMPAPA +T AAEKEKGH  ER+AW SKRD E+FDFDYVDY+PGWFS RDTK+MARDLGRGEAEKAFPR  FKYVLDEPV LQGWDGYALDIEDT  + V MRTYIVKDRL+R+LVT K +  S  AA RFL+SLRLAETR
Sbjct:    1 MKRRSFVFALAV-VPLAAQAQPAEWQTIVGRDLRFRLEMPAPATETKAAEKEKGHTSERIAWASKRDGEMFDFDYVDYQPGWFSERDTKQMARDLGRGEAEKAFPRKTFKYVLDEPVTLQGWDGYALDIEDTQGALVQMRTYIVKDRLFRLLVTAKNNEASKAAAKRFLDSLRLAETR 177          
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: A0A6A7M4V9_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6A7M4V9_9PROT)

HSP 1 Score: 267 bits (682), Expect = 5.130e-89
Identity = 130/178 (73.03%), Postives = 146/178 (82.02%), Query Frame = 1
Query:    4 MKRRFLVSALLLMVPVMARAQPSDWQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            MKRR  V AL  + P+ A AQP++WQT+VG DLRFRLEMPAPA +T + EKEKGH  ERVAW SKRD E+FDFDYVDY+PGWFS RD+K+MARDLGRGEAEKAFPRA FKYV DEP+ LQGWDGYALDIED   + V MRTYIVKDRLYR+LVT K +  S  AA RFL+SLRLAETR
Sbjct:    1 MKRRSFVFALAAVGPLAAHAQPAEWQTIVGRDLRFRLEMPAPATETKSGEKEKGHASERVAWASKRDGEMFDFDYVDYQPGWFSERDSKQMARDLGRGEAEKAFPRATFKYVRDEPITLQGWDGYALDIEDAQGALVQMRTYIVKDRLYRLLVTAKNNEASKAAAQRFLDSLRLAETR 178          
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: A0A259MCI1_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MCI1_9PROT)

HSP 1 Score: 263 bits (673), Expect = 1.630e-87
Identity = 132/178 (74.16%), Postives = 145/178 (81.46%), Query Frame = 1
Query:    7 KRRFLVSA-LLLMVPVMARAQPSDWQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            +R F+ +A  L  VP +  AQP  WQTVVG DLRFRLEMPAP NKTAAAEKE GH G RVAW SKR DE+FDFDYVDYEPGWFSS+D+KEMAR+LGRGEAEKAFPRA FKYVLDEPV LQGWDGYALDI D   + VMMRTYIVKDRLYR+LVT K D ++  AA RFL SLR AET+
Sbjct:   11 RRSFVFTAPALSAVPTVVYAQPDQWQTVVGPDLRFRLEMPAPVNKTAAAEKETGHAGGRVAWASKRADEMFDFDYVDYEPGWFSSKDSKEMARELGRGEAEKAFPRATFKYVLDEPVILQGWDGYALDIADQQGALVMMRTYIVKDRLYRLLVTAKNDEETKAAAARFLNSLRFAETK 188          
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: A0A521LN99_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LN99_9HYPH)

HSP 1 Score: 253 bits (645), Expect = 2.360e-83
Identity = 131/181 (72.38%), Postives = 144/181 (79.56%), Query Frame = 1
Query:    4 MKRRFLVSALLLMVPVMARAQ--PSD-WQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            MKRR LV AL+   P + RAQ  P+D WQTVV  DLR RLEMPAPA KT A+EKEKGH GERVAW SKRD E+FDFDYVDY PGWFS +D+K MA++LGRGEAEKAFPRA FKYV DEPV LQGWDGYALDI D   + VMMRTYIVKDRLYR+LVT K D  +  AA RFL+SLR AETR
Sbjct:    1 MKRRALVLALIA-APAVVRAQTPPADQWQTVVSPDLRVRLEMPAPAQKTVASEKEKGHAGERVAWASKRDGEMFDFDYVDYAPGWFSDKDSKLMAKELGRGEAEKAFPRATFKYVADEPVTLQGWDGYALDIADAQGAVVMMRTYIVKDRLYRLLVTAKNDEVTKGAAKRFLDSLRFAETR 180          
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: A0A521R5V9_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521R5V9_9HYPH)

HSP 1 Score: 248 bits (633), Expect = 1.810e-81
Identity = 126/180 (70.00%), Postives = 140/180 (77.78%), Query Frame = 1
Query:   10 RRFLVSALLLMVPVMARAQ---PSD-WQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            RRF V AL+   P+  RAQ   P+D WQTVVG DLRFR EMP P  KT A EKEKGH  ER+AW SK D E+FDFD+VDY  GWFS +DTK MARDLGRGEAEKAFPR +FKY+LDEPV LQGWDGYALDI D   + VMMRTYIVKDRLYR+LVT K D K+  AA RFL+SLRLA+TR
Sbjct:    7 RRFAVLALIA-TPLTTRAQTPPPTDQWQTVVGPDLRFRFEMPPPVEKTVAGEKEKGHASERIAWASKHDGEMFDFDFVDYSAGWFSDKDTKVMARDLGRGEAEKAFPRDKFKYILDEPVTLQGWDGYALDIADAEGAAVMMRTYIVKDRLYRLLVTAKADDKAKAAAKRFLDSLRLADTR 185          
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: A0A537NAX6_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NAX6_9PROT)

HSP 1 Score: 248 bits (632), Expect = 2.850e-81
Identity = 119/178 (66.85%), Postives = 148/178 (83.15%), Query Frame = 1
Query:    4 MKRRFLVSALLLMVPVMARAQPSDWQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            MKRRFL++++L++ P +ARAQ  +WQTVV  DLRFRLEMP PA KTAA EKEKGH   RVAW+S+R +++F+FDYVDY+ GWFSSRD+KEMAR+LGRG+AEKAF + ++KYV DEP+ LQGWDGYALDI+    + VMMRTYI KDRL+RMLVT   D+ S NAA RFL+SL+LAE+R
Sbjct:    1 MKRRFLLASMLIL-PSVARAQADEWQTVVAPDLRFRLEMPTPATKTAADEKEKGHASVRVAWESRRGEQIFNFDYVDYDAGWFSSRDSKEMARELGRGDAEKAFAKPKYKYVRDEPIVLQGWDGYALDIDSEGGAGVMMRTYIAKDRLFRMLVTVGSDITSKNAAGRFLDSLKLAESR 177          
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Match: UPI0005C29E51 (hypothetical protein n=1 Tax=Reyranella massiliensis TaxID=445220 RepID=UPI0005C29E51)

HSP 1 Score: 247 bits (630), Expect = 5.190e-81
Identity = 125/183 (68.31%), Postives = 140/183 (76.50%), Query Frame = 1
Query:    1 SMKRRFLVSALLLMVPVMARAQPS----DWQTVVGSDLRFRLEMPAPANKTAAAEKEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEAEKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYRMLVTTKGDMKSMNAATRFLESLRLAETR 537
            S+ RR  V AL+   P+ ARAQ S     WQTVVG DLRFR EMP P  KT A EKEKGH  ER+AW SK D E+FDFD+VDY+PGWFS +DTK MARDLGRGEAEKAFPR +FKY+LDE + LQGWDGYALDI D   + VMMRTYIVKDRLYR+LVT K D K+   A RFLESLRLA+TR
Sbjct:    4 SLTRRSAVLALVS-APLAARAQTSPPAEQWQTVVGPDLRFRFEMPPPVEKTLAGEKEKGHASERIAWASKHDGEMFDFDFVDYQPGWFSDKDTKVMARDLGRGEAEKAFPRDKFKYILDEQITLQGWDGYALDIADAEGAAVMMRTYIVKDRLYRLLVTAKADDKARAGAKRFLESLRLADTR 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14653.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A521MFE0_9HYPH2.150e-11090.45Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
A0A1F2ZSW9_9PROT5.450e-10686.19Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI001E35E72F3.480e-9276.54hypothetical protein n=2 Tax=Reyranella TaxID=4452... [more]
A0A1H8NS27_9PROT1.080e-9075.28Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A6A7M4V9_9PROT5.130e-8973.03Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A259MCI1_9PROT1.630e-8774.16Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A521LN99_9HYPH2.360e-8372.38Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
A0A521R5V9_9HYPH1.810e-8170.00Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
A0A537NAX6_9PROT2.850e-8166.85Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI0005C29E515.190e-8168.31hypothetical protein n=1 Tax=Reyranella massiliens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14653contigP-wetherbeei_contig14653:275..814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size540
Hectar predicted targeting categorysignal peptide
Exons1
Cds size537
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.9951527-UTR-P-wetherbeei_contig14653:274..2771683186028.9951527-UTR-P-wetherbeei_contig14653:274..277Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14653 275..277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.0039167-CDS-P-wetherbeei_contig14653:277..8141683186029.0039167-CDS-P-wetherbeei_contig14653:277..814Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14653 278..814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14653.1.1prot_P-wetherbeei_contig14653.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14653 278..814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14653.1.1

>prot_P-wetherbeei_contig14653.1.1 ID=prot_P-wetherbeei_contig14653.1.1|Name=mRNA_P-wetherbeei_contig14653.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
MKRRFLVSALLLMVPVMARAQPSDWQTVVGSDLRFRLEMPAPANKTAAAE
KEKGHVGERVAWQSKRDDELFDFDYVDYEPGWFSSRDTKEMARDLGRGEA
EKAFPRARFKYVLDEPVKLQGWDGYALDIEDTNASRVMMRTYIVKDRLYR
MLVTTKGDMKSMNAATRFLESLRLAETR*
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mRNA from alignment at P-wetherbeei_contig14653:275..814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14653.1.1 ID=mRNA_P-wetherbeei_contig14653.1.1|Name=mRNA_P-wetherbeei_contig14653.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig14653:275..814+ (Phaeothamnion wetherbeei SAG_119_79)
AGCATGAAGCGTCGTTTTCTCGTCTCCGCGCTCCTGCTGATGGTGCCCGT GATGGCGCGTGCGCAGCCCTCGGACTGGCAGACCGTCGTCGGCAGCGATC TCAGGTTCCGGCTGGAAATGCCCGCGCCGGCCAACAAGACCGCGGCCGCA GAGAAGGAAAAGGGCCACGTCGGCGAGCGCGTCGCCTGGCAGTCCAAACG CGACGATGAACTGTTCGATTTCGACTATGTCGACTACGAGCCGGGCTGGT TCTCCAGCCGCGACACCAAGGAGATGGCCCGCGATCTTGGCCGCGGCGAG GCCGAAAAGGCGTTTCCTCGTGCCCGCTTCAAGTACGTGCTGGACGAGCC GGTGAAACTCCAGGGCTGGGACGGCTACGCGCTCGACATCGAGGACACCA ACGCTTCGCGGGTCATGATGCGCACCTACATCGTCAAGGACCGGCTCTAC CGGATGCTGGTCACCACCAAGGGCGACATGAAGTCGATGAATGCGGCGAC CCGCTTTCTGGAGTCGCTCAGGTTGGCCGAGACGCGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14653:275..814+

>mRNA_P-wetherbeei_contig14653.1.1 ID=mRNA_P-wetherbeei_contig14653.1.1|Name=mRNA_P-wetherbeei_contig14653.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig14653:275..814+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGTCGTTTTCTCGTCTCCGCGCTCCTGCTGATGGTGCCCGTGAT
GGCGCGTGCGCAGCCCTCGGACTGGCAGACCGTCGTCGGCAGCGATCTCA
GGTTCCGGCTGGAAATGCCCGCGCCGGCCAACAAGACCGCGGCCGCAGAG
AAGGAAAAGGGCCACGTCGGCGAGCGCGTCGCCTGGCAGTCCAAACGCGA
CGATGAACTGTTCGATTTCGACTATGTCGACTACGAGCCGGGCTGGTTCT
CCAGCCGCGACACCAAGGAGATGGCCCGCGATCTTGGCCGCGGCGAGGCC
GAAAAGGCGTTTCCTCGTGCCCGCTTCAAGTACGTGCTGGACGAGCCGGT
GAAACTCCAGGGCTGGGACGGCTACGCGCTCGACATCGAGGACACCAACG
CTTCGCGGGTCATGATGCGCACCTACATCGTCAAGGACCGGCTCTACCGG
ATGCTGGTCACCACCAAGGGCGACATGAAGTCGATGAATGCGGCGACCCG
CTTTCTGGAGTCGCTCAGGTTGGCCGAGACGCGATAG
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