mRNA_P-wetherbeei_contig10381.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10381.2.1
Unique NamemRNA_P-wetherbeei_contig10381.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: A0A7S2RDC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RDC6_9STRA)

HSP 1 Score: 275 bits (703), Expect = 1.540e-88
Identity = 134/186 (72.04%), Postives = 148/186 (79.57%), Query Frame = 1 
Query:    1 LPEWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLV-------CTHPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPGGGADGAGGEAPQPVLLKYE 537
            +PEWAC+FCGI DPACVVKCV+ GKWFCNSCGS SGSHI+ HLV         H +SPLGET LECYNCG RNVFL+GFVPA AD+VVV+LCRVCVE V +LK+MGWDL EWLPLI DRR L WLVKVPTEQQQLRARQISAAQI +LEE WK DP A L DLD+PG   D    +  QPVL+KYE
Sbjct:  158 VPEWACRFCGISDPACVVKCVEDGKWFCNSCGSTSGSHIIHHLVRAKYNQVALHEESPLGETTLECYNCGCRNVFLLGFVPAKADSVVVVLCRVCVESVGSLKEMGWDLKEWLPLISDRRLLSWLVKVPTEQQQLRARQISAAQINKLEELWKDDPEATLADLDKPG--VD----DELQPVLMKYE 337
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: D7FN00_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN00_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.870e-86
Identity = 136/185 (73.51%), Postives = 153/185 (82.70%), Query Frame = 1 
Query:    4 PEWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLV-------CTHPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPGGGADGAGGEAPQPVLLKYE 537
            PEWAC+FCGIHDPACVV+CV++GK    SCG+ASGSHI+ HLV       C HPDSPLGET+LECYNCGSRN+FLMGFVPA AD+VVVLLCRVCVEG P LKDMGWDL+EWLPL+QDRRFLPWLVKVP+EQQQ RAR IS+AQIA+LEE W  +P A LEDL++PG        EA QPVLLKYE
Sbjct:  151 PEWACRFCGIHDPACVVRCVESGKXXXXSCGNASGSHIIQHLVRSRNNQVCLHPDSPLGETILECYNCGSRNLFLMGFVPAKADSVVVLLCRVCVEGAPGLKDMGWDLSEWLPLVQDRRFLPWLVKVPSEQQQSRARHISSAQIAKLEELWNKEPEATLEDLEKPG-----IDDEA-QPVLLKYE 329
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: A0A6H5L258_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L258_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 3.200e-84
Identity = 132/184 (71.74%), Postives = 148/184 (80.43%), Query Frame = 1 
Query:    7 EWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLV-------CTHPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPGGGADGAGGEAPQPVLLKYE 537
            EWAC+FCGIHDPACVV+CV++GKWFCNSCG+ASGSHI+ HLV       C HPDSPLGET+LECYNCGSRN+FLMGFVPA AD+VVVLLCRVCVEG P LKDMGWDL+EWLPL+QDRRFLPWLVKVP+EQQQ          IA+LEE W  +P A LEDL++PG        EA QPVLLKYE
Sbjct:  139 EWACRFCGIHDPACVVRCVESGKWFCNSCGNASGSHIIQHLVRSRNNQVCLHPDSPLGETILECYNCGSRNLFLMGFVPAKADSVVVLLCRVCVEGAPGLKDMGWDLSEWLPLVQDRRFLPWLVKVPSEQQQ----------IAKLEELWNKEPEATLEDLEKPG-----IDDEA-QPVLLKYE 306
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: A0A1X2IC83_9FUNG (RNA helicase-domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IC83_9FUNG)

HSP 1 Score: 241 bits (614), Expect = 3.450e-76
Identity = 118/186 (63.44%), Postives = 138/186 (74.19%), Query Frame = 1 
Query:    1 LPEWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLV-------CTHPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPGGGADGAGGEAPQPVLLKYE 537
            LP  ACK+CGIH PA VVKCV   +WFCNS G+ SGSHI++HLV         HP+SPLGETVLECYNCG RNVFL+GF+PA +D VVVLLCR     VP+ KDM WD ++W+PLI DR FL WLVK+P EQ+QLRARQIS+AQI +LEE WK D  A LEDL++PG   D    E P PVLL+YE
Sbjct:  115 LPAHACKYCGIHSPASVVKCVTCDRWFCNSRGNTSGSHIINHLVRAKHKEVMLHPESPLGETVLECYNCGCRNVFLLGFIPAKSDTVVVLLCRQPCAAVPSSKDMNWDTSQWMPLIDDRCFLTWLVKIPPEQEQLRARQISSAQINKLEELWKDDTNATLEDLEKPG--VD----EEPHPVLLRYE 294
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: A0A6A4YUA5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YUA5_9STRA)

HSP 1 Score: 236 bits (603), Expect = 2.230e-74
Identity = 112/167 (67.07%), Postives = 129/167 (77.25%), Query Frame = 1 
Query:    1 LPEWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLVCT-------HPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPG 480
            LP  AC +CG+HDPA VVKCV T KWFCNS G+ SGSHIV HLV +       HPDSPLGET+LECYNCG RN FL+GF+PA  D+VVVLLCR     + ALKDM WD+ +WLPLI DR FLPWLVKVPTE +QLR RQI+++QIA+LEE W+  P A LEDLDRPG
Sbjct:   82 LPSHACAYCGLHDPASVVKCVSTDKWFCNSRGNTSGSHIVQHLVRSKNKEVSLHPDSPLGETILECYNCGCRNAFLLGFIPAKQDSVVVLLCRDPCLQMNALKDMSWDMTQWLPLIDDRSFLPWLVKVPTEHEQLRTRQITSSQIAKLEEVWRDHPQATLEDLDRPG 248
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: A0A4D9CSA4_9STRA (UPF1_Zn_bind domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA4_9STRA)

HSP 1 Score: 236 bits (602), Expect = 5.260e-74
Identity = 113/185 (61.08%), Postives = 140/185 (75.68%), Query Frame = 1 
Query:    4 PEWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLV-------CTHPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPGGGADGAGGEAPQPVLLKYE 537
            PE+AC++CGIHDPACVV+CV++ KWFCNS  + +GSHI+ HLV         HP SPLG+TVLECYNCG RNVFL+GF+PA +D+VVVLLCR       ALKD+ WDL +W+PLI+DR FLPWLV+VP+EQ+QLRARQI+A QI +LEE WK +  A LE+++R GG     G E    VLLKYE
Sbjct:  153 PEYACRYCGIHDPACVVRCVESNKWFCNSRWNTTGSHIIQHLVKARNKTVALHPQSPLGDTVLECYNCGCRNVFLLGFIPAKSDSVVVLLCREPCLSNGALKDLDWDLAQWMPLIEDRAFLPWLVRVPSEQEQLRARQITAGQIQKLEEAWKENAEATLEEVERQGG----EGEEEGVAVLLKYE 333
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: A0A7J8BVY9_ROUAE (UPF1 RNA helicase and ATPase n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8BVY9_ROUAE)

HSP 1 Score: 232 bits (592), Expect = 6.070e-73
Identity = 116/186 (62.37%), Postives = 136/186 (73.12%), Query Frame = 1 
Query:    1 LPEWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLV-------CTHPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPGGGADGAGGEAPQPVLLKYE 537
            LP  AC +CGIHDPACVV C  + KWFCN  G+ SGSHIV+HLV         H D PLGETVLECYNCG RNVFL+GF+PA AD+VVVLLCR       +LKD+ WD ++W PLIQDR FL WLVK+P+EQ+QLRARQI+A QI +LEE WK +P A LEDL++PG   D    E PQ VLL+YE
Sbjct:  119 LPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPG--VD----EEPQHVLLRYE 298
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: A0A1S4DEP4_TOBAC (regulator of nonsense transcripts 1 homolog n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4DEP4_TOBAC)

HSP 1 Score: 231 bits (590), Expect = 1.110e-72
Identity = 117/186 (62.90%), Postives = 138/186 (74.19%), Query Frame = 1 
Query:    7 EWACKFCGIHDPACVVKC--VDTGKWFCNSCGSASGSHIVSHLV-------CTHPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPGGGADGAGGEAPQPVLLKYE 537
            E ACK+CG+ +PACVV+C      KWFCNS G+ SGSHIV+HLV       C H DSPLGET+LECYNCG RNVFL+GF+ A A++VVVLLCR     V ALKDM WDL++W PLI DR FL WLVKVP+EQ+QLRARQISA QI ++EE WK +P A LEDL++PG   D    + PQPV LKYE
Sbjct:  139 EHACKYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPG--VD----DEPQPVALKYE 318
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: G4YMU3_PHYSP (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=G4YMU3_PHYSP)

HSP 1 Score: 232 bits (591), Expect = 1.400e-72
Identity = 108/167 (64.67%), Postives = 133/167 (79.64%), Query Frame = 1 
Query:    1 LPEWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLVCT-------HPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPG 480
            LP  AC +CG+HDPA VVKCV + KWFCNS G+ SGSHI+ HLV +       HP+SPLGETVLECYNCG RN FL+GF+PA  D+VVVLLCR     + ALKDM WD+++WLP+I+DR FLPWLVKVP+E +QLRARQI+++QIA+LEE W+ +P A +EDLDRPG
Sbjct:  124 LPPHACAYCGLHDPASVVKCVASDKWFCNSRGNTSGSHIIQHLVRSKNKEVSLHPESPLGETVLECYNCGCRNAFLLGFIPAKQDSVVVLLCRDPCLQMNALKDMSWDMSQWLPIIEDRSFLPWLVKVPSEHEQLRARQITSSQIAKLEELWRDNPLATVEDLDRPG 290
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BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Match: A0A8A5YP91_HUMAN (Regulator of nonsense transcripts 1 variant n=4 Tax=Homo sapiens TaxID=9606 RepID=A0A8A5YP91_HUMAN)

HSP 1 Score: 232 bits (591), Expect = 1.610e-72
Identity = 116/186 (62.37%), Postives = 136/186 (73.12%), Query Frame = 1 
Query:    1 LPEWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLV-------CTHPDSPLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGWDLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPGAALEDLDRPGGGADGAGGEAPQPVLLKYE 537
            LP  AC +CGIHDPACVV C  + KWFCN  G+ SGSHIV+HLV         H D PLGETVLECYNCG RNVFL+GF+PA AD+VVVLLCR       +LKD+ WD ++W PLIQDR FL WLVK+P+EQ+QLRARQI+A QI +LEE WK +P A LEDL++PG   D    E PQ VLL+YE
Sbjct:  118 LPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPG--VD----EEPQHVLLRYE 297
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10381.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RDC6_9STRA1.540e-8872.04Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FN00_ECTSI1.870e-8673.51RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5L258_9PHAE3.200e-8471.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X2IC83_9FUNG3.450e-7663.44RNA helicase-domain-containing protein n=1 Tax=Abs... [more]
A0A6A4YUA5_9STRA2.230e-7467.07Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A4D9CSA4_9STRA5.260e-7461.08UPF1_Zn_bind domain-containing protein n=1 Tax=Nan... [more]
A0A7J8BVY9_ROUAE6.070e-7362.37UPF1 RNA helicase and ATPase n=1 Tax=Rousettus aeg... [more]
A0A1S4DEP4_TOBAC1.110e-7262.90regulator of nonsense transcripts 1 homolog n=1 Ta... [more]
G4YMU3_PHYSP1.400e-7264.67Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A8A5YP91_HUMAN1.610e-7262.37Regulator of nonsense transcripts 1 variant n=4 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10381contigP-wetherbeei_contig10381:705..2359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FN00
Preferred nameUPF1
PFAMsAAA_11,AAA_12,ResIII,UPF1_Zn_bind
Model size537
Max annot lvl2759|Eukaryota
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000294,GO:0000723,GO:0000781,GO:0000784,GO:0000785,GO:0000932,GO:0000956,GO:0001101,GO:0001666,GO:0002237,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005737,GO:0005829,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006449,GO:0006464,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007548,GO:0007549,GO:0008026,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008298,GO:0008334,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009751,GO:0009753,GO:0009755,GO:0009756,GO:0009790,GO:0009863,GO:0009867,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010182,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010610,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022414,GO:0023052,GO:0030054,GO:0030466,GO:0030538,GO:0030554,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032204,GO:0032268,GO:0032269,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032870,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034427,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035112,GO:0035145,GO:0035194,GO:0035639,GO:0035690,GO:0035770,GO:0036094,GO:0036211,GO:0036293,GO:0036294,GO:0036464,GO:0040029,GO:0042162,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0042742,GO:0042886,GO:0043021,GO:0043024,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043412,GO:0043487,GO:0043488,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044530,GO:0044770,GO:0044786,GO:0044877,GO:0045184,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048571,GO:0048598,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050779,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0051721,GO:0055044,GO:0060249,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070478,GO:0070482,GO:0070555,GO:0070647,GO:0070727,GO:0070887,GO:0071025,GO:0071027,GO:0071028,GO:0071030,GO:0071044,GO:0071166,GO:0071216,GO:0071219,GO:0071222,GO:0071229,GO:0071236,GO:0071310,GO:0071322,GO:0071345,GO:0071347,GO:0071395,GO:0071396,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071453,GO:0071456,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098542,GO:0098687,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902679,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2000622,GO:2000624,GO:2000815,GO:2001141
Exons3
Evalue3.06e-87
EggNOG OGsCOG1112@1|root,KOG1802@2759|Eukaryota
Ec32 ortholog descriptionRNA helicase
Ec32 orthologEc-25_002930.2
Descriptionnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Cds size537
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.5469406-CDS-P-wetherbeei_contig10381:704..8331683185866.5469406-CDS-P-wetherbeei_contig10381:704..833Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10381 705..833 +
1683185866.5568566-CDS-P-wetherbeei_contig10381:1515..17461683185866.5568566-CDS-P-wetherbeei_contig10381:1515..1746Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10381 1516..1746 +
1683185866.5640929-CDS-P-wetherbeei_contig10381:2182..23591683185866.5640929-CDS-P-wetherbeei_contig10381:2182..2359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10381 2183..2359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10381.2.1prot_P-wetherbeei_contig10381.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10381 705..2359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10381.2.1

>prot_P-wetherbeei_contig10381.2.1 ID=prot_P-wetherbeei_contig10381.2.1|Name=mRNA_P-wetherbeei_contig10381.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
LPEWACKFCGIHDPACVVKCVDTGKWFCNSCGSASGSHIVSHLVCTHPDS
PLGETVLECYNCGSRNVFLMGFVPATADAVVVLLCRVCVEGVPALKDMGW
DLNEWLPLIQDRRFLPWLVKVPTEQQQLRARQISAAQIARLEERWKADPG
AALEDLDRPGGGADGAGGEAPQPVLLKYE
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mRNA from alignment at P-wetherbeei_contig10381:705..2359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10381.2.1 ID=mRNA_P-wetherbeei_contig10381.2.1|Name=mRNA_P-wetherbeei_contig10381.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1655bp|location=Sequence derived from alignment at P-wetherbeei_contig10381:705..2359+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGGAGTGGGCCTGCAAATTCTGCGGCATCCACGACCCGGCCTGCGT
CGTGAAGTGCGTCGACACGGGAAAGTGGTTCTGCAACTCCTGCGGCAGCG
CCAGCGGCAGCCACATCGTCTCGCACCTCGTCCGGAGCAAATGCACGCAG
GCAAGCGATCCCCTTTCTTTGGAACAAACGGGACTGGAGAGGTCTTTGTC
GTGGAATTATATGACACGATAGAACTGTCCATGCAAAACCTGCATTTGAG
CATTTGTATCGTCGATCTTTTGAGCAACAGTATGCGGCAATCGCGGGGCC
ACGCTTTGCTGCTAATTTCAACTATGGCGAGTTGCGAGTTCGTTAGGGCC
GGCTGGCGTCCCGACCAAGGGACGTTGTGCGTTCCCTAAGAATTGCGCAG
CTGCCTGCACGATGTCGGCTCATTTCCTCGCGTTACTGGTGGCATTTTAC
GCCTGGCGGATTCGCGAAAGGCGCTTTTCCGCAAGGCGGGCGAGTCTAAC
ACCGAGGCGTCTACATTTTCTTGAATTTGGCATCATGTTGCGCCGACGTC
ATCCCTTTTTTGTTTGCCCCCTCACGTTCCCTTTCTGTCTCTGCGTCCTT
CCATCCACCATCCCCGCGCCGCAACTGCTACACGGAAACCGGCCAAACCA
TTACCTTGAAAACCGGCCACAATTTCTCGTGGGCGAAACTACAAACTAAC
AATTCGCCACAACCACCAACCACCAACCGGCAACCAAAAACCGACGGACG
GACAAACCGATGGACAAAAACCTTGTTCGATGCAAAATTTTGTTCGATGC
AACACATCCAGGTGTGCACGCACCCGGACAGCCCGCTGGGCGAGACGGTG
CTCGAGTGCTACAACTGCGGCAGCCGCAACGTTTTCCTGATGGGCTTCGT
GCCGGCGACGGCGGACGCCGTGGTGGTGCTGCTGTGCCGCGTGTGCGTGG
AGGGCGTGCCGGCACTCAAGGACATGGGCTGGGACCTAAACGAGTGGCTG
CCGCTCATCCAGGATCGCCGCTTTCTGCCGTGGCTCGTCAAGGTGCGTTT
GCTAGCGTTTGCGTCCATTGCGTTTTTTCTCTCTTTCTGTGTTCCTTTTT
GTCCTTTTGCTTTCCCCTTCCTTCTTTTAATTCGTTTCGTTTCCCCTTTC
TCCTTCTGCGTTGCTGTCTGCGTTTGTGTTGCGGTATTAGCGGCTTCCTG
TGTTGCATTTTTGTTGTAAGATTTGCCGTTCGTCTGCCAGCGCTGCTTTT
CGAGAGTTGAATTATTTCTGTCTGATTAAAGAATAGGCTTCATATTTCTT
GAACGAGGAAGCTTGCTCCTCGAAAGCTTGTCAAACCTCTCCAAATTTTG
CAGCTCCGGCGATTCGCCGTTTGTCTTTAGTCCGTCAACGCTTTACAGGA
TACTTACTGCGGGCGCGCCCTCCCATTCTCTATCCAATTGTTCCGGCGGT
TGTAACGGCGGCCGGCCGGCAAGAGCAGGTGCCAACGGAGCAGCAGCAGC
TGCGCGCCCGCCAGATCTCGGCGGCGCAGATCGCCCGCCTGGAGGAGCGC
TGGAAGGCGGACCCGGGGGCCGCACTGGAGGACTTGGACCGGCCTGGCGG
TGGCGCGGACGGCGCGGGGGGGGAGGCCCCGCAGCCGGTGCTGCTAAAGT
ACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10381:705..2359+

>mRNA_P-wetherbeei_contig10381.2.1 ID=mRNA_P-wetherbeei_contig10381.2.1|Name=mRNA_P-wetherbeei_contig10381.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig10381:705..2359+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGGAGTGGGCCTGCAAATTCTGCGGCATCCACGACCCGGCCTGCGT
CGTGAAGTGCGTCGACACGGGAAAGTGGTTCTGCAACTCCTGCGGCAGCG
CCAGCGGCAGCCACATCGTCTCGCACCTCGTGTGCACGCACCCGGACAGC
CCGCTGGGCGAGACGGTGCTCGAGTGCTACAACTGCGGCAGCCGCAACGT
TTTCCTGATGGGCTTCGTGCCGGCGACGGCGGACGCCGTGGTGGTGCTGC
TGTGCCGCGTGTGCGTGGAGGGCGTGCCGGCACTCAAGGACATGGGCTGG
GACCTAAACGAGTGGCTGCCGCTCATCCAGGATCGCCGCTTTCTGCCGTG
GCTCGTCAAGGTGCCAACGGAGCAGCAGCAGCTGCGCGCCCGCCAGATCT
CGGCGGCGCAGATCGCCCGCCTGGAGGAGCGCTGGAAGGCGGACCCGGGG
GCCGCACTGGAGGACTTGGACCGGCCTGGCGGTGGCGCGGACGGCGCGGG
GGGGGAGGCCCCGCAGCCGGTGCTGCTAAAGTACGAG
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