mRNA_P-wetherbeei_contig1464.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1464.1.1
Unique NamemRNA_P-wetherbeei_contig1464.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1464.1.1 vs. uniprot
Match: A0A836CPJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPJ6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.690e-5
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  712 RRVFAHYVLGRL---AALFFLCNPGSAACFADSKTYLQERFPNRDLVV 846
            RR+FAHYVLGRL   A LFFLC+PG+ A F + K YL  R+PNR+L V
Sbjct:   18 RRIFAHYVLGRLGFLALLFFLCHPGTMATF-NGKDYLTHRYPNRELAV 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1464.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CPJ6_9STRA2.690e-562.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1464contigP-wetherbeei_contig1464:212..3131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2920
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000890.1
Cds size1161
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.5370705-UTR-P-wetherbeei_contig1464:211..12801683186028.5370705-UTR-P-wetherbeei_contig1464:211..1280Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1464 212..1280 -
1683186028.5572789-UTR-P-wetherbeei_contig1464:2441..31311683186028.5572789-UTR-P-wetherbeei_contig1464:2441..3131Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1464 2442..3131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.5479708-CDS-P-wetherbeei_contig1464:1280..24411683186028.5479708-CDS-P-wetherbeei_contig1464:1280..2441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1464 1281..2441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1464.1.1prot_P-wetherbeei_contig1464.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1464 1281..2441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1464.1.1

>prot_P-wetherbeei_contig1464.1.1 ID=prot_P-wetherbeei_contig1464.1.1|Name=mRNA_P-wetherbeei_contig1464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=387bp
MATSTAPRRVFAHYVLGRLAALFFLCNPGSAACFADSKTYLQERFPNRDL
VVDELQPEAWRLSSRRLKDLPVAVAGQTSFSPSLRRCLKVAAADGCSAAA
IAVVEAPAGAHATEAACAQSQGVSKAALSPRRGRVSLGCIGAGAAPALAF
IRPSSPTRRGQRAADLSARWTGGSGGYPVGRGGDSRETVSSGGGGGLHTR
AMFRSRRRPVPSSSSSPPSMLLGWGSKPAANANDFYGSDAAAAAGIGSGG
TSSTTATAASATADLGYSSSSRGGSSGLAINGNGSGASLGNSHIFTVLVT
GAADVYDSAVSCVGWYLVTSDIGRRYLHPPRRGEPAFTVPASAARMDGAG
GATGVTAIGGRYDLVGFMEIDSLESERRGAAGNIGW*
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mRNA from alignment at P-wetherbeei_contig1464:212..3131-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1464.1.1 ID=mRNA_P-wetherbeei_contig1464.1.1|Name=mRNA_P-wetherbeei_contig1464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2920bp|location=Sequence derived from alignment at P-wetherbeei_contig1464:212..3131- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTTTCTTAGGATTACCAAATCCAAGCGAGGGAAGGAAGCTGTGTCTT
ACACTTCTGTCACTCTGATGGCAGGCACATTTTTCCAGCGGACGCGTGAG
CAACCGTGTGCCTCTTCGCGAACGCCCGCACTTCAATATCCCCTCAAGTT
CGAAAGCATCGCGCTGGGACTTGGCGGCAGCTGTGCAAGCGCATGCATCG
TCAGCTCTGCTCTCCCTCTGCAGTAACCTAATCGCCAAAAATCGACCCTA
ACAGCCGGGGCGGCAGCTGTCAGCCTACGTCGCCTGATCAGCGGTTTCGT
TACCCGATTTGAGAAACGCAGCTCAAAAATTCGGGCAAGGGAGGGAACAA
ACGCACGGCGAAGTTCTGTTCGTTAGGAACGCCCAGAACAGAGTGGCCCA
TCTAGACGCCGACCACCCTTTCCCTCCCTCCCACAAGCTGCGAAACTGCA
TTTATTTGCTCGGGGCAAACGGAGGTGGGGCAACTGATAAAAGTAAACAG
AGGGCAAAGCTTACAGGCTAGGCGAAGCTTTGCGACCAGTCGACGCGGCT
GTGCTCAAGCGCCGTGCGTTTCTGCCAAGTGCAAGACTGATTACGGCCCT
GTTTCGCCGTACAGCCGTCAGCAAACGAGAAAACGCGCTTGAACGAGAGC
CGAGAACGGCGCGCCGCTGCAGCTTTCAGAGCATCTCAACATGGCGACGT
CGACGGCTCCGCGCCGCGTCTTTGCGCACTACGTGTTGGGTCGTCTCGCG
GCCCTCTTCTTTCTGTGCAATCCTGGATCCGCTGCGTGCTTCGCTGACAG
CAAGACGTACCTGCAGGAGCGCTTTCCGAATCGTGATCTGGTGGTCGATG
AGCTGCAGCCCGAGGCGTGGCGTCTGTCGTCACGGCGCCTCAAGGACCTG
CCGGTTGCTGTCGCCGGCCAGACCTCTTTCAGCCCGTCGCTGCGCCGCTG
CTTGAAGGTCGCCGCCGCCGACGGCTGCAGCGCCGCAGCCATTGCCGTTG
TGGAAGCTCCGGCGGGCGCCCACGCGACGGAGGCCGCTTGTGCCCAGTCG
CAGGGCGTCTCAAAGGCAGCGCTCTCGCCGCGTCGCGGCCGGGTCTCCCT
CGGCTGCATCGGCGCCGGCGCCGCGCCTGCGCTCGCTTTCATACGTCCGA
GTTCTCCCACGCGCCGCGGTCAGCGTGCTGCTGACCTGTCCGCCCGCTGG
ACGGGCGGCAGCGGCGGTTATCCCGTCGGCCGCGGCGGAGACAGCCGAGA
GACTGTCTCTTCCGGCGGCGGCGGCGGCCTCCACACGCGCGCCATGTTCC
GGTCGCGGCGCCGCCCGGTGCCGTCGTCGTCGTCGTCGCCCCCGTCGATG
CTGCTCGGCTGGGGAAGCAAGCCGGCGGCCAACGCCAACGACTTCTATGG
AAGCGACGCCGCCGCCGCCGCCGGCATCGGTAGCGGCGGGACGTCTTCCA
CCACCGCCACGGCCGCCTCGGCTACCGCCGACCTCGGTTACAGCAGCAGC
AGCCGCGGCGGCAGCTCCGGCCTTGCTATCAACGGCAATGGCAGCGGCGC
CAGCTTGGGAAACAGCCACATCTTCACGGTGCTGGTGACGGGCGCTGCCG
ATGTGTACGATTCTGCCGTCTCGTGTGTCGGCTGGTACCTCGTGACTTCT
GACATCGGCCGCCGCTACCTGCACCCGCCCCGCCGCGGCGAGCCCGCTTT
CACAGTGCCAGCGTCGGCGGCGCGCATGGACGGCGCCGGTGGCGCAACCG
GCGTAACTGCCATAGGCGGCCGTTATGACCTGGTCGGTTTCATGGAGATT
GACAGCCTCGAGTCAGAGCGCCGCGGCGCCGCTGGGAACATCGGCTGGTG
AAACTGTCCAAAAGAAAAGTTTGGCGTTTCCGGGTTCCGGCTGTGCGCGC
GGCAGATCGTGGGCCAAGAGCACGAGGAGCGGCGCAAATGGCTTGGCGCG
CATCGGCCTCGTTGCGAACGCTGCAGTCTGTGGGCGATGGCTGCGGCTGC
GGTGACCATGTGTGGCGGCATGGCATGCGCCTGCGGTGGACGGGGGTGGT
CGCTGCAGCGGTGGTTGAGCGCGGCTGCAGGGAGCCGAAGGAGGTCGATC
AAAGCCGGGAGCCGATGCCGCAGGCTAATGTGCTAGCGGAAGCGGCATCC
GGCGTTGCAACTGAAGCTGCCTACGGCCTGCTCGCTGCCGCCGCTTTGTG
GGTCCTTTTTTTCCTCGGCCGCCGCCGAACGCTGGAGCGGCGGCGATGGG
CAGGGAAAGGCGGGATGGAGCTGGCGGCAGGCACGAACTTGACGACTCCA
CCTGTTCGTCTCGGCCGCCGGGGGTATGGTGGGAGCACATCGGCGGGCAG
GGCGGGTGCGGCAGAGCGTCAGGAGATGGCTCACGTTTCGGGCACACGTC
GAAAAAATAAGGTTCATGAGAAGGCGGAGCCGCCGGAGACATTTCGGGGA
AAAGTTAGAGGGGGCGTGTTAGACCGGGGGGCGCCTTCCATGTTAGAGCC
GGCGGCAGGGGGAAAAGGCCTGGCGCCCGCAAAAAAAGGGAAAGAGTTGG
TTTGTTGATAACGGCAGAGGCCGTAATCCGTCGCCGCCGGCAATAGACGT
TTCCTAGAGAGCGTAGAGAAAGGGGAAGCGAGTGCTAGACGAGCAAGCGG
GCATACCACCGTAAAAAGTAGCAGCGGGGGGAAGAAGGAAAAGAAGGGGC
GCTTTTCTTTATTTTGTAGAATGCAACGGCGGCGGAGCAAGCACACGCTG
CTGCCAAGAGGAGTGCTGCGCGGCAGCAGCGGAGGGTTGGTCGGCGCGAG
GCAGTCGACACAAACTACGTTGTTGCCAGCCAGCGCTTTGCTTACCCGGC
GCGCCCGCGGTGGGCCTGAAAGCGGAGCTGCGGGCGGACAGACGGCTGTA
AATACAATACAGTAACACTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1464:212..3131-

>mRNA_P-wetherbeei_contig1464.1.1 ID=mRNA_P-wetherbeei_contig1464.1.1|Name=mRNA_P-wetherbeei_contig1464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1161bp|location=Sequence derived from alignment at P-wetherbeei_contig1464:212..3131- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGTCGACGGCTCCGCGCCGCGTCTTTGCGCACTACGTGTTGGG
TCGTCTCGCGGCCCTCTTCTTTCTGTGCAATCCTGGATCCGCTGCGTGCT
TCGCTGACAGCAAGACGTACCTGCAGGAGCGCTTTCCGAATCGTGATCTG
GTGGTCGATGAGCTGCAGCCCGAGGCGTGGCGTCTGTCGTCACGGCGCCT
CAAGGACCTGCCGGTTGCTGTCGCCGGCCAGACCTCTTTCAGCCCGTCGC
TGCGCCGCTGCTTGAAGGTCGCCGCCGCCGACGGCTGCAGCGCCGCAGCC
ATTGCCGTTGTGGAAGCTCCGGCGGGCGCCCACGCGACGGAGGCCGCTTG
TGCCCAGTCGCAGGGCGTCTCAAAGGCAGCGCTCTCGCCGCGTCGCGGCC
GGGTCTCCCTCGGCTGCATCGGCGCCGGCGCCGCGCCTGCGCTCGCTTTC
ATACGTCCGAGTTCTCCCACGCGCCGCGGTCAGCGTGCTGCTGACCTGTC
CGCCCGCTGGACGGGCGGCAGCGGCGGTTATCCCGTCGGCCGCGGCGGAG
ACAGCCGAGAGACTGTCTCTTCCGGCGGCGGCGGCGGCCTCCACACGCGC
GCCATGTTCCGGTCGCGGCGCCGCCCGGTGCCGTCGTCGTCGTCGTCGCC
CCCGTCGATGCTGCTCGGCTGGGGAAGCAAGCCGGCGGCCAACGCCAACG
ACTTCTATGGAAGCGACGCCGCCGCCGCCGCCGGCATCGGTAGCGGCGGG
ACGTCTTCCACCACCGCCACGGCCGCCTCGGCTACCGCCGACCTCGGTTA
CAGCAGCAGCAGCCGCGGCGGCAGCTCCGGCCTTGCTATCAACGGCAATG
GCAGCGGCGCCAGCTTGGGAAACAGCCACATCTTCACGGTGCTGGTGACG
GGCGCTGCCGATGTGTACGATTCTGCCGTCTCGTGTGTCGGCTGGTACCT
CGTGACTTCTGACATCGGCCGCCGCTACCTGCACCCGCCCCGCCGCGGCG
AGCCCGCTTTCACAGTGCCAGCGTCGGCGGCGCGCATGGACGGCGCCGGT
GGCGCAACCGGCGTAACTGCCATAGGCGGCCGTTATGACCTGGTCGGTTT
CATGGAGATTGACAGCCTCGAGTCAGAGCGCCGCGGCGCCGCTGGGAACA
TCGGCTGGTGA
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