mRNA_P-wetherbeei_contig14624.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14624.1.1
Unique NamemRNA_P-wetherbeei_contig14624.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14624.1.1 vs. uniprot
Match: D8LQ09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ09_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 7.550e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   22 VRGYDPVSGVVIVRASRETHRMVWAALTFMSSFKKLVVSANVRAVAG 162
            VR +D  SGV ++RA RE+HRMV A+LT +S  K   +S  V+AVAG
Sbjct:   55 VRSFDRTSGVCVIRAGRESHRMVRASLTLLSGTKDARLSVTVKAVAG 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14624.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ09_ECTSI7.550e-753.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14624contigP-wetherbeei_contig14624:1483..1650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4536.ONIVA11G09930.3
PFAMsRNase_P_Rpp14
Model size168
Max annot lvl35493|Streptophyta
KEGG koko:K03537
KEGG Pathwayko03008,ko03013,map03008,map03013
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0071704,GO:1901564
Exons1
Evalue6.39e-06
EggNOG OGsCOG1369@1|root,KOG4639@2759|Eukaryota,37U47@33090|Viridiplantae,3GI0R@35493|Streptophyta,3M038@4447|Liliopsida,3I9EV@38820|Poales
Ec32 ortholog descriptionRibonuclease P/MRP protein subunit
Ec32 orthologEc-15_001380.1
EC3.1.26.5
DescriptionComponent of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP
Cds size168
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.2257426-CDS-P-wetherbeei_contig14624:1482..16501683186028.2257426-CDS-P-wetherbeei_contig14624:1482..1650Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14624 1483..1650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14624.1.1prot_P-wetherbeei_contig14624.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14624 1483..1650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14624.1.1

>prot_P-wetherbeei_contig14624.1.1 ID=prot_P-wetherbeei_contig14624.1.1|Name=mRNA_P-wetherbeei_contig14624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
MYGWNPAVRGYDPVSGVVIVRASRETHRMVWAALTFMSSFKKLVVSANVR
AVAGD*
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mRNA from alignment at P-wetherbeei_contig14624:1483..1650+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14624.1.1 ID=mRNA_P-wetherbeei_contig14624.1.1|Name=mRNA_P-wetherbeei_contig14624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig14624:1483..1650+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTATGGATGGAATCCTGCAGTGCGAGGCTACGATCCCGTATCGGGCGT
CGTCATCGTCCGCGCGAGCCGTGAGACGCACCGCATGGTGTGGGCGGCTC
TCACCTTCATGAGCAGCTTCAAAAAGCTCGTCGTGAGCGCGAATGTCAGG
GCTGTGGCAGGTGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14624:1483..1650+

>mRNA_P-wetherbeei_contig14624.1.1 ID=mRNA_P-wetherbeei_contig14624.1.1|Name=mRNA_P-wetherbeei_contig14624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig14624:1483..1650+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTATGGATGGAATCCTGCAGTGCGAGGCTACGATCCCGTATCGGGCGT
CGTCATCGTCCGCGCGAGCCGTGAGACGCACCGCATGGTGTGGGCGGCTC
TCACCTTCATGAGCAGCTTCAAAAAGCTCGTCGTGAGCGCGAATGTCAGG
GCTGTGGCAGGTGACTGA
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