mRNA_P-wetherbeei_contig14622.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14622.1.1
Unique NamemRNA_P-wetherbeei_contig14622.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14622.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14622contigP-wetherbeei_contig14622:657..1639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size696
Hectar predicted targeting categoryother localisation
Exons3
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.1746497-CDS-P-wetherbeei_contig14622:656..9801683186028.1746497-CDS-P-wetherbeei_contig14622:656..980Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14622 657..980 -
1683186028.183376-CDS-P-wetherbeei_contig14622:1256..14281683186028.183376-CDS-P-wetherbeei_contig14622:1256..1428Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14622 1257..1428 -
1683186028.1919522-CDS-P-wetherbeei_contig14622:1439..14891683186028.1919522-CDS-P-wetherbeei_contig14622:1439..1489Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14622 1440..1489 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.2000463-UTR-P-wetherbeei_contig14622:1489..16391683186028.2000463-UTR-P-wetherbeei_contig14622:1489..1639Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14622 1490..1639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14622.1.1prot_P-wetherbeei_contig14622.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14622 657..1489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14622.1.1

>prot_P-wetherbeei_contig14622.1.1 ID=prot_P-wetherbeei_contig14622.1.1|Name=mRNA_P-wetherbeei_contig14622.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MGLRSAVRRRRQAAAPVELFESGNDGTLVDAVTVGNLDCSDLYDHPHSWT
IDLGADDRVTAKRVGFYNGVEGRVTWFGRLVGEQGNAVLTWREDDPCDAD
AFLLTIQRPTEGQGSVRVEYESKPVRRGGGGGGKHGDNIVVVKLYREIKD
ETDGPDEHDHEHDRRHLVAIPAAGNVALEEDA
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mRNA from alignment at P-wetherbeei_contig14622:657..1639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14622.1.1 ID=mRNA_P-wetherbeei_contig14622.1.1|Name=mRNA_P-wetherbeei_contig14622.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=983bp|location=Sequence derived from alignment at P-wetherbeei_contig14622:657..1639- (Phaeothamnion wetherbeei SAG_119_79)
CAAACAGAAGAGAGATGCGCTGCACGTTCGCGAGCGGTGGATGCATGATG
CGTTACGCTCTTCGTGCCGCGGCACTAACCGTGCTGTTGGTTCCGCGCGA
TGCAACGGCCAAGTTGTTTAGTCTAAGGGACGCGGAAGAGGACTGCAACT
ATGGGACTACGGTCGGCCGTGCGGCGACGGCGACAGGCTGCGGCGCCCGT
TACGATTCCGTCGAGCTCTTCGAGTCAGGCAACGACGGGACGCTCGTGGA
CGCCGTCACCGTCGGCAACCTGGACTGCTCTGATCTGTACGACCACCCGC
ATTCGTGGACGATCGACCTCGGCGCCGATGACCGGGTTACCGCAAAGCGC
GTCGGCTTCTACAACGGCGTAGAGGGGCGCGTGGTGAGTATTAAAGTTTC
ATGGGGTAGGTTTTAATCCGTGTGAAAGCCTTATTTGCCATTGCCTCGTG
CCACCACGGCCTTGTAGGTTGACTCGGCATTACCTTCTGCGTGCCGATGC
GACACCTTTTTTGCTTGCCAGAACATGCGATCTGAATCTGCCCCACGGAC
TTCCGCTTCCTTTCCTTCCGAATCACCACCTGCAAGCCTTAAACTTCCAC
AATTCCCCCATTCCCAACCTCGTCCGCCTCTCTCCTTTCCAATCAACCAC
CGCCGGCAGACGTGGTTCGGCCGGCTAGTCGGAGAACAAGGCAACGCGGT
CCTGACGTGGCGCGAGGACGATCCGTGCGACGCCGATGCCTTTTTGCTGA
CCATCCAGCGCCCGACAGAGGGCCAGGGCTCCGTGCGCGTCGAGTACGAG
AGCAAGCCCGTCCGCCGTGGCGGCGGCGGCGGCGGCAAGCACGGCGACAA
TATTGTTGTGGTGAAGCTCTACCGCGAGATCAAGGACGAAACCGATGGGC
CGGACGAGCACGACCACGAACACGACCGCAGACACCTGGTGGCGATTCCT
GCCGCTGGCAACGTGGCGCTAGAGGAAGACGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14622:657..1639-

>mRNA_P-wetherbeei_contig14622.1.1 ID=mRNA_P-wetherbeei_contig14622.1.1|Name=mRNA_P-wetherbeei_contig14622.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig14622:657..1639- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGACTACGGTCGGCCGTGCGGCGACGGCGACAGGCTGCGGCGCCCGT
CGAGCTCTTCGAGTCAGGCAACGACGGGACGCTCGTGGACGCCGTCACCG
TCGGCAACCTGGACTGCTCTGATCTGTACGACCACCCGCATTCGTGGACG
ATCGACCTCGGCGCCGATGACCGGGTTACCGCAAAGCGCGTCGGCTTCTA
CAACGGCGTAGAGGGGCGCGTGACGTGGTTCGGCCGGCTAGTCGGAGAAC
AAGGCAACGCGGTCCTGACGTGGCGCGAGGACGATCCGTGCGACGCCGAT
GCCTTTTTGCTGACCATCCAGCGCCCGACAGAGGGCCAGGGCTCCGTGCG
CGTCGAGTACGAGAGCAAGCCCGTCCGCCGTGGCGGCGGCGGCGGCGGCA
AGCACGGCGACAATATTGTTGTGGTGAAGCTCTACCGCGAGATCAAGGAC
GAAACCGATGGGCCGGACGAGCACGACCACGAACACGACCGCAGACACCT
GGTGGCGATTCCTGCCGCTGGCAACGTGGCGCTAGAGGAAGACGCG
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