mRNA_P-wetherbeei_contig1462.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1462.4.1
Unique NamemRNA_P-wetherbeei_contig1462.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1462.4.1 vs. uniprot
Match: D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 4.380e-64
Identity = 113/186 (60.75%), Postives = 144/186 (77.42%), Query Frame = 1
Query:    1 RYSRDREGRTALDWAERYGSTRLADII-----RVDVYAAAKERDVRAVMALLEQGVDPNARCPIRDFTALIASVFNKDEDMVRALLQHPHTDPNRPGRHGMTPLMYAAQAGHERMVCLLLQLKADRQR----GESALEIASVRRFDVVVNILKFDPQRLSVAACAARNDWPAIQGLVAQGVSVNAR 531
            R+ RD EGRTA+DWAER+GSTRL D++     +V ++  A+ RDVR V+AL+EQGVDPN  CP +++T LIA+VFN+DEDM  ALL H  TD N PGRHGMTPLMYAAQAGH+RM  LLL+L+ADR R    GE+ALEIA+VR    VVN+LK+DP+RLS+ A A+ +D  A+ GL+AQGV V++R
Sbjct: 1724 RHLRDHEGRTAMDWAERFGSTRLLDVLLFDPNKVKIFLLARGRDVRGVLALMEQGVDPNTTCPEKNYTPLIAAVFNQDEDMASALLSHRTTDVNGPGRHGMTPLMYAAQAGHDRMAVLLLRLRADRYRCNDQGETALEIAAVRGHTSVVNVLKYDPERLSICAAASNDDGAALDGLLAQGVQVDSR 1909          
BLAST of mRNA_P-wetherbeei_contig1462.4.1 vs. uniprot
Match: A0A835YQM7_9STRA (VPS9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM7_9STRA)

HSP 1 Score: 214 bits (546), Expect = 4.050e-61
Identity = 119/194 (61.34%), Postives = 142/194 (73.20%), Query Frame = 1
Query:    1 RYSRDREGRTALDWAERYGSTRLADII-----RVDVYAAAKERDVRAVMALLEQGVDPNARCPIRDFTALIASVFNKDED----MVRALLQHPH----TDPNRPGRHGMTPLMYAAQAGHERMVCLLLQLKADRQR----GESALEIASVRRFDVVVNILKFDPQRLSVAACAARNDWPAIQGLVAQGVSVNAR 531
            RY RD EGRTALDWAER+GS +L DI+     RV+VY AAKERDVR V+ALL QGVDPNARCP R +TAL+A+VFN+DED    MVRALL        TD N PGRHGMTPLMYAAQAGHE+MV LLL L+ADR R    GE+AL++A +R +  V  +L+ DP RLSV A AA  D  A++ L+ QG+ VN+R
Sbjct: 2594 RYQRDMEGRTALDWAERFGSAQLGDILKYDPKRVEVYKAAKERDVRGVLALLAQGVDPNARCPRRGYTALVAAVFNQDEDVDEDMVRALLPGGRRGFRTDVNCPGRHGMTPLMYAAQAGHEKMVSLLLSLRADRYRTNDKGETALDMAGMRGYRGVEGMLRHDPHRLSVCAAAAAGDGAAVEALMKQGIGVNSR 2787          
BLAST of mRNA_P-wetherbeei_contig1462.4.1 vs. uniprot
Match: A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.600e-52
Identity = 100/174 (57.47%), Postives = 127/174 (72.99%), Query Frame = 1
Query:   22 GRTALDWAERYGSTRLADIIRVDVYAAAKERDVRAVMALLEQGVDPNARCPIRDFTALIASVFNKDEDMVRALLQHPHTDPNRPGRHGMTPLMYAAQAGHERMVCLLLQLKADRQR----GESALEIASVRRFDVVVNILKFDPQRLSVAACAARNDWPAIQGLVAQGVSVNAR 531
            G TAL +  +       D  +V ++  A+ RDVR V+AL+EQGVDPN  CP +++T LIA+VFN+DEDM  ALL H  TD N PGRHGMTPLMYAAQAGH+RM  LLL+L+ADR R    GE+ALEIA+VR    VVN+LK+DP+RLS+ A AA +D  A+ GL+AQGV V++R
Sbjct: 1540 GETALMYCSQREGYATGDT-QVKIFLLARGRDVRGVLALMEQGVDPNTACPEKNYTPLIAAVFNQDEDMASALLSHRTTDVNGPGRHGMTPLMYAAQAGHDRMAVLLLRLRADRYRCNDQGETALEIAAVRGHTSVVNVLKYDPERLSICAAAANDDGAALDGLLAQGVQVDSR 1712          
BLAST of mRNA_P-wetherbeei_contig1462.4.1 vs. uniprot
Match: A0A7S3NHB6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHB6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.250e-9
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   13 DREGRTALDWAERYGS-TRLADIIRVD-----VYAAAKERDVRAVMALLEQGVDPNARCPIRDFTALIASVFNKDEDMVRALL 243
            D  GR AL WAE  G   RL  ++R D     +Y  A++R    V+ALLEQGVDP+  CP + +TAL+A+ +N D  + R L+
Sbjct: 1173 DASGRNALRWAETSGGHARLVAVLRNDPRRDRIYDKARDRRSADVVALLEQGVDPDLACPEKAYTALVAAAYNDDVGLARLLI 1255          
BLAST of mRNA_P-wetherbeei_contig1462.4.1 vs. uniprot
Match: A0A812PLC0_SYMPI (ANK3 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812PLC0_SYMPI)

HSP 1 Score: 58.5 bits (140), Expect = 8.130e-7
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   88 DVYAAAKERDVRAVMALLEQGVDPNARCPIRDFTALIASVFNKDEDMVRALLQHPHTDPNRPGRHGMTPLMYAAQAGHERMVCLLLQLKADRQRGES 378
            D+++A +  D + V ALL+Q +DPN     R  +AL  + F      V+ LL+         GRHG+TPLM AA  GH  +V  L++ KAD+ RG +
Sbjct:   46 DLFSACEVDDAKKVEALLQQPLDPNMLADGR--SALQLASFGGALKSVKLLLEAGADRDASFGRHGITPLMNAADQGHAEVVRALVEAKADKDRGST 140          
BLAST of mRNA_P-wetherbeei_contig1462.4.1 vs. uniprot
Match: A0A168C9R4_CORDF (Ankyrin repeat-containing domain protein n=1 Tax=Akanthomyces lecanii RCEF 1005 TaxID=1081108 RepID=A0A168C9R4_CORDF)

HSP 1 Score: 53.5 bits (127), Expect = 2.060e-5
Identity = 37/117 (31.62%), Postives = 57/117 (48.72%), Query Frame = 1
Query:   94 YAAAKERDVRAVMALLEQGVDPNARCPIRDFTALIASVFNKDEDMVRALLQHPHTDPNRPGRHGMTPLMYAAQAGHERMVCLLLQLKADRQ----RGESALEIASVRRFDVVVNILK 432
            Y AAK  DV ++  L+++G  P+ +  +   T L  +     E +VR L Q    D N       +PL + +  GHER+V +LL+ KAD       G++A  +A     D VV  L+
Sbjct:   88 YNAAKAGDVHSIEELIQEGAKPDLK-NLSGMTPLWVAASEGHEAVVRVLAQRQDVDVNSLSISHRSPLFWPSYFGHERVVAILLEAKADPGLVDVNGDTAATVARKNGHDGVVKALE 203          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1462.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FJN4_ECTSI4.380e-6460.75VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YQM7_9STRA4.050e-6161.34VPS9 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6H5KV84_9PHAE1.600e-5257.47VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3NHB6_9STRA4.250e-943.37Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812PLC0_SYMPI8.130e-738.14ANK3 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A168C9R4_CORDF2.060e-531.62Ankyrin repeat-containing domain protein n=1 Tax=A... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1462contigP-wetherbeei_contig1462:5749..6876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJN4
Preferred nameMIB1
PFAMsAnk,Ank_2,Ank_4,Ank_5,MIB_HERC2,VPS9,ZZ,zf-C3HC4_3
Model size552
Max annot lvl2759|Eukaryota
KEGG koko:K10645
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.19e-65
EggNOG OGsCOG0666@1|root,KOG2319@2759|Eukaryota,KOG4177@2759|Eukaryota
EC2.3.2.27
Descriptionspectrin binding
Cds size552
COG categoryI
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.080994-CDS-P-wetherbeei_contig1462:5748..59341683186028.080994-CDS-P-wetherbeei_contig1462:5748..5934Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1462 5749..5934 -
1683186028.0944428-CDS-P-wetherbeei_contig1462:6114..63011683186028.0944428-CDS-P-wetherbeei_contig1462:6114..6301Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1462 6115..6301 -
1683186028.1042652-CDS-P-wetherbeei_contig1462:6519..66141683186028.1042652-CDS-P-wetherbeei_contig1462:6519..6614Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1462 6520..6614 -
1683186028.113774-CDS-P-wetherbeei_contig1462:6792..68761683186028.113774-CDS-P-wetherbeei_contig1462:6792..6876Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1462 6793..6876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1462.4.1prot_P-wetherbeei_contig1462.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1462 5749..6876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1462.4.1

>prot_P-wetherbeei_contig1462.4.1 ID=prot_P-wetherbeei_contig1462.4.1|Name=mRNA_P-wetherbeei_contig1462.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
RYSRDREGRTALDWAERYGSTRLADIIRVDVYAAAKERDVRAVMALLEQG
VDPNARCPIRDFTALIASVFNKDEDMVRALLQHPHTDPNRPGRHGMTPLM
YAAQAGHERMVCLLLQLKADRQRGESALEIASVRRFDVVVNILKFDPQRL
SVAACAARNDWPAIQGLVAQGVSVNARRVEGSE*
back to top

mRNA from alignment at P-wetherbeei_contig1462:5749..6876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1462.4.1 ID=mRNA_P-wetherbeei_contig1462.4.1|Name=mRNA_P-wetherbeei_contig1462.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1128bp|location=Sequence derived from alignment at P-wetherbeei_contig1462:5749..6876- (Phaeothamnion wetherbeei SAG_119_79)
AGGTATTCGCGAGACCGGGAAGGACGCACCGCGCTAGATTGGGCGGAGCG GTACGGCAGCACACGGCTGGCGGACATCATTCGTGTAGATCCGCGGCAGG CAAGCGCTGGACCTTGTTTTCCAACGATTGATGGATTGTCGCTCTTTCTC AGGATGTATGGCGCATCACACATGTGCTGGGAAGCGTTGTCCGAACGTCG CTTACATTGTTTTGGCTGCCATATACTTGCGCACTCGTCTACCATTCCTT CCTTCTTTCCAGGTGGACGTGTACGCGGCTGCAAAGGAGCGGGACGTACG AGCGGTGATGGCGTTGTTGGAGCAAGGAGTCGACCCCAACGCAAGATGTC CGATCCGGTACGCGGATCATTTCCGACCGGCGTTCATCTCGTTCGTTTCG CATGCATCATGTTGTGCCGCAGCACAAATAACCACACAACCACACTCCCC CCCTACTTGTGCACCCTTCCCCATCCCTTTCTCCGATACCAATACCCTCT GGTCGGTGCGTGCCCTCGTTGGGTGCCCGGCATTGTATCCCACCGCAACC GCACTACGCCCCGTGTCACACGCAGGGACTTCACGGCACTGATCGCGAGC GTCTTTAACAAGGACGAGGACATGGTGCGCGCACTGCTGCAGCACCCGCA CACCGACCCTAACCGGCCAGGCCGCCACGGGATGACCCCGCTCATGTACG CCGCCCAGGCCGGCCATGAGCGGATGGTCTGCCTGCTGCTGCAGCTCAAG GCGGACAGGCAAGTTCTTTCTCTCTGCATTGCAGCGGAACGGAATGAATG GCTTGTTGGGCTATGGAAGGACAAGTGGCATTTCCGCCCTCGCGCAACAC TAAAGGCCTCCAACCATCGTGAACTTTTGGCGACGGGCCCGTCCTGACTG TATTTTCCTTTTCACCCGCTGCGCAGGTACCGGCTGAACGAGCGGGGTGA GTCAGCCTTGGAGATTGCCTCGGTACGGCGGTTCGACGTGGTGGTGAACA TCCTCAAGTTCGATCCGCAGCGGCTCAGCGTCGCCGCCTGCGCCGCCCGC AATGACTGGCCCGCCATCCAGGGGCTAGTGGCGCAAGGCGTCAGCGTGAA TGCCAGGCGAGTAGAAGGGAGCGAATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1462:5749..6876-

>mRNA_P-wetherbeei_contig1462.4.1 ID=mRNA_P-wetherbeei_contig1462.4.1|Name=mRNA_P-wetherbeei_contig1462.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig1462:5749..6876- (Phaeothamnion wetherbeei SAG_119_79)
AGGTATTCGCGAGACCGGGAAGGACGCACCGCGCTAGATTGGGCGGAGCG
GTACGGCAGCACACGGCTGGCGGACATCATTCGTGTGGACGTGTACGCGG
CTGCAAAGGAGCGGGACGTACGAGCGGTGATGGCGTTGTTGGAGCAAGGA
GTCGACCCCAACGCAAGATGTCCGATCCGGGACTTCACGGCACTGATCGC
GAGCGTCTTTAACAAGGACGAGGACATGGTGCGCGCACTGCTGCAGCACC
CGCACACCGACCCTAACCGGCCAGGCCGCCACGGGATGACCCCGCTCATG
TACGCCGCCCAGGCCGGCCATGAGCGGATGGTCTGCCTGCTGCTGCAGCT
CAAGGCGGACAGGCAACGGGGTGAGTCAGCCTTGGAGATTGCCTCGGTAC
GGCGGTTCGACGTGGTGGTGAACATCCTCAAGTTCGATCCGCAGCGGCTC
AGCGTCGCCGCCTGCGCCGCCCGCAATGACTGGCCCGCCATCCAGGGGCT
AGTGGCGCAAGGCGTCAGCGTGAATGCCAGGCGAGTAGAAGGGAGCGAAT
GA
back to top