mRNA_P-wetherbeei_contig10379.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10379.1.1
Unique NamemRNA_P-wetherbeei_contig10379.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10379.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10379contigP-wetherbeei_contig10379:408..1922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size964
Hectar predicted targeting categorysignal peptide
Exons3
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.2816281-UTR-P-wetherbeei_contig10379:407..5491683185866.2816281-UTR-P-wetherbeei_contig10379:407..549Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10379 408..549 -
1683185866.2963924-UTR-P-wetherbeei_contig10379:1098..11641683185866.2963924-UTR-P-wetherbeei_contig10379:1098..1164Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10379 1099..1164 -
1683185866.304008-UTR-P-wetherbeei_contig10379:1348..14671683185866.304008-UTR-P-wetherbeei_contig10379:1348..1467Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10379 1349..1467 -
1683185866.3118718-UTR-P-wetherbeei_contig10379:1834..19221683185866.3118718-UTR-P-wetherbeei_contig10379:1834..1922Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10379 1835..1922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.2890234-CDS-P-wetherbeei_contig10379:549..10981683185866.2890234-CDS-P-wetherbeei_contig10379:549..1098Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10379 550..1098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10379.1.1prot_P-wetherbeei_contig10379.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10379 550..1098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10379.1.1

>prot_P-wetherbeei_contig10379.1.1 ID=prot_P-wetherbeei_contig10379.1.1|Name=mRNA_P-wetherbeei_contig10379.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MQQFFHIAALLARSRARTADALSEADLETCTACGVRSGTSGGGRGRGGTG
RRLICKGCRTRTYCSSICRLCDRRGHRAADARIVADPETRERTKRTLEEA
KVENKRRVGDEACMLIILLCNRICRFVPFHSAQMRPHGISCCSFLLLCRP
ADQTLRPCVLRLIFPPAFVFLLRLAIVAFLER*
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mRNA from alignment at P-wetherbeei_contig10379:408..1922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10379.1.1 ID=mRNA_P-wetherbeei_contig10379.1.1|Name=mRNA_P-wetherbeei_contig10379.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1515bp|location=Sequence derived from alignment at P-wetherbeei_contig10379:408..1922- (Phaeothamnion wetherbeei SAG_119_79)
TGCTAAGGAACTAAGGAATTTTCCCTTACTGGAACCGGCCCTTGTATAAG
AGATACATTGCGTCGTCAACGCCGCCGGGCAGCCACAGGTGCGTTGTCGC
CCAAAGGGTTGCGTGACGGGAAAGAGGCCGCCATTGGCTCTTCGCTTTAC
CTCCTTCCCCCCCCACATTTTGCTTTGTTTCTTTGAGCTTGTACTTTGTG
CCGGTTGCATAGGTTTTTGTCAGAAAGTTAGAGGTGGCATCGCAATGTAA
CCTGCAGGCAGCGATGGCAAACGATGTCCGGGTGGCATCGCAATGTAACC
TGCTGCTGCTGCTGCTGCTGCTTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGCATGC
ATCCCATTTGTACCCCACGTCTGCCGCCTGTTCCATCCTGTGTGTCGGCT
GGCAGCCAGAGATGGCAACGCTGCTGCCGGCGGCAGGCGCCGATCCCAAC
TCACGGAGCCGCTCCGGCACCATCTCGCTTGTCGTGGCGGTGGGCGAGAA
CCGGAAGAGATTGCTGTTTGCAAGGTTAGGGAGAGGCGAAAGGGATTGTT
TCTTATTTAGATGCAGGCCGTCGCGTCGTATGCAGCTAGAGGTTTGAAAA
ATTCTTTCAGGGAGGGAGCGGACGCAGTTTTCAACGCTGGAACTGGCTTC
TCCTCGTCGTTTTCTGTCGCTCCGTTGGGACACGTCAATGTTGATGGTGG
ATAAACAGCTGCTGCATCGGGCCGGCGCCAATATCGACGTTCGGGACGAC
CGCGGGAGCTCGCTGGCGGAGCGGATGCAACAATTCTTCCACATTGCGGC
GCTTTTGGCGCGCTCCAGGGCCCGCACCGCCGATGCCCTTTCCGAGGCCG
ACTTGGAGACTTGCACGGCATGCGGCGTAAGGAGCGGCACTAGTGGCGGC
GGCCGTGGCCGCGGCGGAACGGGCAGAAGGCTGATTTGCAAGGGTTGCCG
CACGAGAACGTACTGCTCATCAATCTGCCGACTGTGTGACCGAAGAGGGC
ACCGGGCCGCCGACGCAAGGATAGTGGCCGACCCCGAAACGCGAGAAAGA
ACAAAAAGGACTTTGGAAGAAGCAAAGGTCGAAAATAAGCGTCGTGTTGG
CGATGAAGCGTGCATGCTGATCATTTTGCTTTGTAATCGAATATGTCGCT
TCGTTCCTTTCCATTCTGCTCAAATGCGGCCTCACGGCATCTCATGTTGT
TCGTTTTTGCTGCTCTGTAGGCCAGCCGACCAAACCTTGCGGCCCTGCGT
GCTTCGACTCATTTTTCCCCCTGCTTTTGTCTTTCTGCTCCGACTGGCCA
TTGTCGCGTTTCTGGAGAGGTGATGCCGGTGGCGTTACGATGGCTGTTTG
GATGGATGAGGAACACGCCCCCGGCTGCAGCCTGAAGCCACGATGGGCCA
CCATCATTCATGAGCCTGAGATGCTGGCCACGTTTGGAATCTCCGGCAGC
GTCGAGTTTGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10379:408..1922-

>mRNA_P-wetherbeei_contig10379.1.1 ID=mRNA_P-wetherbeei_contig10379.1.1|Name=mRNA_P-wetherbeei_contig10379.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig10379:408..1922- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACAATTCTTCCACATTGCGGCGCTTTTGGCGCGCTCCAGGGCCCG
CACCGCCGATGCCCTTTCCGAGGCCGACTTGGAGACTTGCACGGCATGCG
GCGTAAGGAGCGGCACTAGTGGCGGCGGCCGTGGCCGCGGCGGAACGGGC
AGAAGGCTGATTTGCAAGGGTTGCCGCACGAGAACGTACTGCTCATCAAT
CTGCCGACTGTGTGACCGAAGAGGGCACCGGGCCGCCGACGCAAGGATAG
TGGCCGACCCCGAAACGCGAGAAAGAACAAAAAGGACTTTGGAAGAAGCA
AAGGTCGAAAATAAGCGTCGTGTTGGCGATGAAGCGTGCATGCTGATCAT
TTTGCTTTGTAATCGAATATGTCGCTTCGTTCCTTTCCATTCTGCTCAAA
TGCGGCCTCACGGCATCTCATGTTGTTCGTTTTTGCTGCTCTGTAGGCCA
GCCGACCAAACCTTGCGGCCCTGCGTGCTTCGACTCATTTTTCCCCCTGC
TTTTGTCTTTCTGCTCCGACTGGCCATTGTCGCGTTTCTGGAGAGGTGA
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