mRNA_P-wetherbeei_contig14598.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14598.1.1
Unique NamemRNA_P-wetherbeei_contig14598.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig14598.1.1 vs. uniprot
Match: A0A835ZFQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.160e-9
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 PTC-YCEDKFNLRFVDMLTYPRPIRKFNMLLDRRMLLSELRDLM 129
            P+C YC+ K N+RFVD LTYPRP RKF +LLDR MLL  LR++M
Sbjct:  211 PSCPYCQGKLNVRFVDTLTYPRPARKFRLLLDRSMLLGALREMM 254
[Close]
BLAST of mRNA_P-wetherbeei_contig14598.1.1 vs. uniprot
Match: A0A4D9CSN0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSN0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.630e-8
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 PTCYCEDKFNLRFVDMLTYPRPIRKFNMLLDRRMLLSELRDLM 129
            P  +C DK  +RFVDMLTYPRP+RKF+MLL +RM +  LR+++
Sbjct:  269 PCPFCADKVFVRFVDMLTYPRPVRKFSMLLSKRMRIGSLREML 311
[Close]
BLAST of mRNA_P-wetherbeei_contig14598.1.1 vs. uniprot
Match: A0A7S2RBA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBA8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.600e-8
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   10 YCEDKFNLRFVDMLTYPRPIRKFNMLLDRRMLLSELRDLM 129
            YC DK  LRFVDMLTYPRPIR+F ML++  M L  LRDL+
Sbjct:  201 YCRDKLRLRFVDMLTYPRPIRQFWMLINGDMRLGSLRDLL 240
[Close]
BLAST of mRNA_P-wetherbeei_contig14598.1.1 vs. uniprot
Match: A0A6H5JCE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.910e-6
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 CYCEDKFNLRFVDMLTYPRPIRKFNMLLDRRMLLSELRDLM 129
            CYC+ K  L+ VDMLTYPRP+RKF +L++ +M L  LR++M
Sbjct:   59 CYCKGKLILKVVDMLTYPRPVRKFEVLVEDQMSLLGLREIM 99
[Close]
BLAST of mRNA_P-wetherbeei_contig14598.1.1 vs. uniprot
Match: D7FRV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV5_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-6
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 CYCEDKFNLRFVDMLTYPRPIRKFNMLLDRRMLLSELRDLM 129
            CYC+ K  L+ VDMLTYPRP+RKF +L++ +M L  LR++M
Sbjct:  191 CYCKGKLILKVVDMLTYPRPVRKFEVLVEDQMSLLGLREIM 231
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14598.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZFQ4_9STRA1.160e-965.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CSN0_9STRA3.630e-858.14Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2RBA8_9STRA7.600e-867.50Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5JCE8_9PHAE2.910e-656.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRV5_ECTSI2.920e-656.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14598contigP-wetherbeei_contig14598:1568..1696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186027.048018-CDS-P-wetherbeei_contig14598:1567..16961683186027.048018-CDS-P-wetherbeei_contig14598:1567..1696Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14598 1568..1696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14598.1.1prot_P-wetherbeei_contig14598.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14598 1568..1696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14598.1.1

>prot_P-wetherbeei_contig14598.1.1 ID=prot_P-wetherbeei_contig14598.1.1|Name=mRNA_P-wetherbeei_contig14598.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
PTCYCEDKFNLRFVDMLTYPRPIRKFNMLLDRRMLLSELRDLM
back to top

mRNA from alignment at P-wetherbeei_contig14598:1568..1696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14598.1.1 ID=mRNA_P-wetherbeei_contig14598.1.1|Name=mRNA_P-wetherbeei_contig14598.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig14598:1568..1696+ (Phaeothamnion wetherbeei SAG_119_79)
CCCACCTGCTACTGCGAGGACAAGTTCAACCTGCGCTTCGTCGACATGCT
GACGTACCCGCGGCCGATCCGTAAGTTCAACATGCTTTTGGACCGCCGGA
TGCTGCTGAGCGAGCTGCGGGACCTTATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14598:1568..1696+

>mRNA_P-wetherbeei_contig14598.1.1 ID=mRNA_P-wetherbeei_contig14598.1.1|Name=mRNA_P-wetherbeei_contig14598.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig14598:1568..1696+ (Phaeothamnion wetherbeei SAG_119_79)
CCCACCTGCTACTGCGAGGACAAGTTCAACCTGCGCTTCGTCGACATGCT
GACGTACCCGCGGCCGATCCGTAAGTTCAACATGCTTTTGGACCGCCGGA
TGCTGCTGAGCGAGCTGCGGGACCTTATG
back to top