mRNA_P-wetherbeei_contig14580.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: B8BJG0_ORYSI (Uncharacterized protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8BJG0_ORYSI) HSP 1 Score: 94.0 bits (232), Expect = 5.830e-17 Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 3
Query: 321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRH--HEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAV--TGGAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGSD 632
EL+RR QEE +TA SLHPGVI TNL RH L++ + F++ +PF K+IPQGAATS Y A + G Y+ +C+E TA A D LAK+LW+FS ++T D
Sbjct: 217 ELSRRFQEEGCNLTANSLHPGVIATNLPRHILTNSLIISI-FSVMKPFLKSIPQGAATSCYLALHPGLKDVSGKYFADCNEATPTAVARDAELAKKLWEFSEELTSGD 323
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A0D9XPQ4_9ORYZ (Uncharacterized protein n=9 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9XPQ4_9ORYZ) HSP 1 Score: 91.3 bits (225), Expect = 1.010e-16 Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 3
Query: 318 QELNRRMQEEKTGVTAVSLHPGVIYTNLTRH--HEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAV--TGGAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGSD 632
+EL+RR QEE +TA SLHPGVI TNL RH G+++ + F++ +PF K+IPQGAAT+ Y A V G ++ +C+E TA A D LAK+LW+FS ++T +
Sbjct: 216 KELSRRFQEEGCNLTANSLHPGVIATNLPRHILTNGVLISI-FSVMKPFLKSIPQGAATNCYLALHPGVKDVSGKHFADCNEVTPTAVARDAELAKKLWEFSEELTSGE 323
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A251RKT2_HELAN (Putative glucose/ribitol dehydrogenase n=5 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RKT2_HELAN) HSP 1 Score: 89.7 bits (221), Expect = 1.830e-16 Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 3
Query: 318 QELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVT 623
+EL RR+QEE +TA SLHPGVI TNL HH G ++F + + F K IPQGAAT+ Y A + G G Y+ + + K +A A+D LAK+LWDFS K+T
Sbjct: 183 KELTRRLQEEGVNITANSLHPGVINTNLL-HHNGFFA-IFFKVVQSFLKNIPQGAATTCYVAMHPQLKGVSGEYFADSNLKKASAYAQDPELAKKLWDFSVKLT 284
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A0A9Q773_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9Q773_ARUDO) HSP 1 Score: 90.1 bits (222), Expect = 2.410e-16 Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 3
Query: 321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHH--EGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAV--TGGAYYLNCHEGKVTASAEDTALAKELWDFSAKVTG 626
EL+RR QEE +TA SLHPGVI TN+ R+ G +V V ++++PF K+IPQGAAT+ Y A + G Y+ +C+E TA A D LAK LW FS ++ G
Sbjct: 215 ELSRRFQEEGCNLTANSLHPGVIVTNIVRYFATNGALVSVLGSVAKPFLKSIPQGAATNCYLALHPDLKDVSGKYFADCNEATPTAVARDAELAKRLWSFSEELVG 320
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A498JL52_MALDO (Uncharacterized protein n=4 Tax=Maleae TaxID=721813 RepID=A0A498JL52_MALDO) HSP 1 Score: 89.7 bits (221), Expect = 2.830e-16 Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 3
Query: 321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKT--IPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
EL RR+++E +TA SLHPG+I+TN+ RH L++ +F +S FNKT +PQGAATS Y A V G G Y+++ + GK ++ A+D LAK+LWDFS +T +
Sbjct: 212 ELTRRLKKEGVKITANSLHPGMIFTNIGRHD--LLLSCFFGVSGLFNKTKTVPQGAATSCYLALNPQVKGVSGEYFVDSNIGKQSSQAKDADLAKKLWDFSLSLTNA 316
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A199UJM1_ANACO (Short-chain dehydrogenase TIC 32, chloroplastic (Fragment) n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UJM1_ANACO) HSP 1 Score: 86.3 bits (212), Expect = 3.350e-16 Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 3
Query: 321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFS 611
EL+RR++EE +TA S+HPG+I TNL RH L++R+ + F K +PQGAAT+ Y A + G G Y+L+C+E K +A A + LAK+LWDFS
Sbjct: 75 ELSRRLKEEGANITANSVHPGLIMTNLMRH-SFLLMRILKVFTCIFWKNVPQGAATTCYVALHPTLKGVTGKYFLDCNEEKPSALAREETLAKKLWDFS 172
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A6I9SR68_SESIN (short-chain dehydrogenase TIC 32, chloroplastic-like n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SR68_SESIN) HSP 1 Score: 89.0 bits (219), Expect = 5.080e-16 Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 3
Query: 321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
EL RR++EE +TA SLHPG I TNL RHH G + + + F K IPQGAAT+ Y A V G G Y+ + + GK +A A+D LAK+LWDFS K+T S
Sbjct: 211 ELARRLKEEGVAITANSLHPGAIATNLLRHH-GFIEGAVNWVGKYFIKNIPQGAATTCYVALHPQVKGVSGEYFADSNIGKASALAKDAELAKKLWDFSLKLTES 314
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: D8R2T8_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R2T8_SELML) HSP 1 Score: 89.0 bits (219), Expect = 5.710e-16 Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 3
Query: 318 QELNRRMQ---EEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
+EL RR+Q E VTA +LHPG I TNL R ++V F L +PF KT+PQGAAT++Y A ++ G G Y +C+E + +A+A D +A ELW+FS K S
Sbjct: 214 KELARRLQCSQERNVNVTANALHPGAIDTNLGRDFNKILVSTVFFLGKPFLKTVPQGAATTVYAAIHPSMRGVTGKYLCDCNEAECSATANDMKMAAELWEFSEKFVAS 322
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A8J5L5M0_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L5M0_ZINOF) HSP 1 Score: 88.2 bits (217), Expect = 1.020e-15 Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 3
Query: 321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
EL RR++EE VTA S+HPG+I TNL RH + + A+S KT+PQGAATS Y A + G G Y+ +C+E K TA A D ALAK+LW+FS ++ S
Sbjct: 215 ELARRLKEEGANVTANSVHPGLIETNLMRHSVAFITALR-AVSGFMWKTVPQGAATSCYVALNPNMKGVTGKYFADCNEEKATAKARDEALAKKLWEFSEQLVNS 318
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A8J5L691_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L691_ZINOF) HSP 1 Score: 89.7 bits (221), Expect = 1.820e-15 Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 3
Query: 321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
EL RR++EE VTA S+HPG+I TNL RH + + A+S KT+PQGAATS Y A + G G Y+ +C+E KVTA A D ALAK+LW+FS ++ S
Sbjct: 668 ELARRLKEEGANVTANSVHPGMIETNLMRHSVAFITALR-AVSGFMWKTVPQGAATSCYVALNPNMKGVTGKYFADCNEEKVTAKARDEALAKKLWEFSEQLVNS 771 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig14580.1.1 >prot_P-wetherbeei_contig14580.1.1 ID=prot_P-wetherbeei_contig14580.1.1|Name=mRNA_P-wetherbeei_contig14580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp MQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAAback to top mRNA from alignment at P-wetherbeei_contig14580:2..1540+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig14580.1.1 ID=mRNA_P-wetherbeei_contig14580.1.1|Name=mRNA_P-wetherbeei_contig14580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1539bp|location=Sequence derived from alignment at P-wetherbeei_contig14580:2..1540+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig14580:2..1540+ >mRNA_P-wetherbeei_contig14580.1.1 ID=mRNA_P-wetherbeei_contig14580.1.1|Name=mRNA_P-wetherbeei_contig14580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig14580:2..1540+ (Phaeothamnion wetherbeei SAG_119_79)back to top |