mRNA_P-wetherbeei_contig14580.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14580.1.1
Unique NamemRNA_P-wetherbeei_contig14580.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: B8BJG0_ORYSI (Uncharacterized protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8BJG0_ORYSI)

HSP 1 Score: 94.0 bits (232), Expect = 5.830e-17
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRH--HEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAV--TGGAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGSD 632
            EL+RR QEE   +TA SLHPGVI TNL RH     L++ + F++ +PF K+IPQGAATS Y A    +    G Y+ +C+E   TA A D  LAK+LW+FS ++T  D
Sbjct:  217 ELSRRFQEEGCNLTANSLHPGVIATNLPRHILTNSLIISI-FSVMKPFLKSIPQGAATSCYLALHPGLKDVSGKYFADCNEATPTAVARDAELAKKLWEFSEELTSGD 323          
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A0D9XPQ4_9ORYZ (Uncharacterized protein n=9 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9XPQ4_9ORYZ)

HSP 1 Score: 91.3 bits (225), Expect = 1.010e-16
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  318 QELNRRMQEEKTGVTAVSLHPGVIYTNLTRH--HEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAV--TGGAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGSD 632
            +EL+RR QEE   +TA SLHPGVI TNL RH    G+++ + F++ +PF K+IPQGAAT+ Y A    V    G ++ +C+E   TA A D  LAK+LW+FS ++T  +
Sbjct:  216 KELSRRFQEEGCNLTANSLHPGVIATNLPRHILTNGVLISI-FSVMKPFLKSIPQGAATNCYLALHPGVKDVSGKHFADCNEVTPTAVARDAELAKKLWEFSEELTSGE 323          
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A251RKT2_HELAN (Putative glucose/ribitol dehydrogenase n=5 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RKT2_HELAN)

HSP 1 Score: 89.7 bits (221), Expect = 1.830e-16
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  318 QELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVT 623
            +EL RR+QEE   +TA SLHPGVI TNL  HH G    ++F + + F K IPQGAAT+ Y A    + G  G Y+ + +  K +A A+D  LAK+LWDFS K+T
Sbjct:  183 KELTRRLQEEGVNITANSLHPGVINTNLL-HHNGFFA-IFFKVVQSFLKNIPQGAATTCYVAMHPQLKGVSGEYFADSNLKKASAYAQDPELAKKLWDFSVKLT 284          
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A0A9Q773_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9Q773_ARUDO)

HSP 1 Score: 90.1 bits (222), Expect = 2.410e-16
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHH--EGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAV--TGGAYYLNCHEGKVTASAEDTALAKELWDFSAKVTG 626
            EL+RR QEE   +TA SLHPGVI TN+ R+    G +V V  ++++PF K+IPQGAAT+ Y A    +    G Y+ +C+E   TA A D  LAK LW FS ++ G
Sbjct:  215 ELSRRFQEEGCNLTANSLHPGVIVTNIVRYFATNGALVSVLGSVAKPFLKSIPQGAATNCYLALHPDLKDVSGKYFADCNEATPTAVARDAELAKRLWSFSEELVG 320          
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A498JL52_MALDO (Uncharacterized protein n=4 Tax=Maleae TaxID=721813 RepID=A0A498JL52_MALDO)

HSP 1 Score: 89.7 bits (221), Expect = 2.830e-16
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 3
Query:  321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKT--IPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
            EL RR+++E   +TA SLHPG+I+TN+ RH   L++  +F +S  FNKT  +PQGAATS Y A    V G  G Y+++ + GK ++ A+D  LAK+LWDFS  +T +
Sbjct:  212 ELTRRLKKEGVKITANSLHPGMIFTNIGRHD--LLLSCFFGVSGLFNKTKTVPQGAATSCYLALNPQVKGVSGEYFVDSNIGKQSSQAKDADLAKKLWDFSLSLTNA 316          
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A199UJM1_ANACO (Short-chain dehydrogenase TIC 32, chloroplastic (Fragment) n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UJM1_ANACO)

HSP 1 Score: 86.3 bits (212), Expect = 3.350e-16
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFS 611
            EL+RR++EE   +TA S+HPG+I TNL RH   L++R+    +  F K +PQGAAT+ Y A    + G  G Y+L+C+E K +A A +  LAK+LWDFS
Sbjct:   75 ELSRRLKEEGANITANSVHPGLIMTNLMRH-SFLLMRILKVFTCIFWKNVPQGAATTCYVALHPTLKGVTGKYFLDCNEEKPSALAREETLAKKLWDFS 172          
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A6I9SR68_SESIN (short-chain dehydrogenase TIC 32, chloroplastic-like n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SR68_SESIN)

HSP 1 Score: 89.0 bits (219), Expect = 5.080e-16
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
            EL RR++EE   +TA SLHPG I TNL RHH G +      + + F K IPQGAAT+ Y A    V G  G Y+ + + GK +A A+D  LAK+LWDFS K+T S
Sbjct:  211 ELARRLKEEGVAITANSLHPGAIATNLLRHH-GFIEGAVNWVGKYFIKNIPQGAATTCYVALHPQVKGVSGEYFADSNIGKASALAKDAELAKKLWDFSLKLTES 314          
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: D8R2T8_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R2T8_SELML)

HSP 1 Score: 89.0 bits (219), Expect = 5.710e-16
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  318 QELNRRMQ---EEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
            +EL RR+Q   E    VTA +LHPG I TNL R    ++V   F L +PF KT+PQGAAT++Y A   ++ G  G Y  +C+E + +A+A D  +A ELW+FS K   S
Sbjct:  214 KELARRLQCSQERNVNVTANALHPGAIDTNLGRDFNKILVSTVFFLGKPFLKTVPQGAATTVYAAIHPSMRGVTGKYLCDCNEAECSATANDMKMAAELWEFSEKFVAS 322          
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A8J5L5M0_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L5M0_ZINOF)

HSP 1 Score: 88.2 bits (217), Expect = 1.020e-15
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
            EL RR++EE   VTA S+HPG+I TNL RH    +  +  A+S    KT+PQGAATS Y A    + G  G Y+ +C+E K TA A D ALAK+LW+FS ++  S
Sbjct:  215 ELARRLKEEGANVTANSVHPGLIETNLMRHSVAFITALR-AVSGFMWKTVPQGAATSCYVALNPNMKGVTGKYFADCNEEKATAKARDEALAKKLWEFSEQLVNS 318          
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Match: A0A8J5L691_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L691_ZINOF)

HSP 1 Score: 89.7 bits (221), Expect = 1.820e-15
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  321 ELNRRMQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAATSLYCAAADAVTG--GAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGS 629
            EL RR++EE   VTA S+HPG+I TNL RH    +  +  A+S    KT+PQGAATS Y A    + G  G Y+ +C+E KVTA A D ALAK+LW+FS ++  S
Sbjct:  668 ELARRLKEEGANVTANSVHPGMIETNLMRHSVAFITALR-AVSGFMWKTVPQGAATSCYVALNPNMKGVTGKYFADCNEEKVTAKARDEALAKKLWEFSEQLVNS 771          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14580.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8BJG0_ORYSI5.830e-1749.07Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
A0A0D9XPQ4_9ORYZ1.010e-1646.79Uncharacterized protein n=9 Tax=Oryzinae TaxID=164... [more]
A0A251RKT2_HELAN1.830e-1649.04Putative glucose/ribitol dehydrogenase n=5 Tax=Hel... [more]
A0A0A9Q773_ARUDO2.410e-1647.17Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A498JL52_MALDO2.830e-1646.73Uncharacterized protein n=4 Tax=Maleae TaxID=72181... [more]
A0A199UJM1_ANACO3.350e-1647.47Short-chain dehydrogenase TIC 32, chloroplastic (F... [more]
A0A6I9SR68_SESIN5.080e-1649.52short-chain dehydrogenase TIC 32, chloroplastic-li... [more]
D8R2T8_SELML5.710e-1644.95Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
A0A8J5L5M0_ZINOF1.020e-1548.57Uncharacterized protein n=3 Tax=Zingiber officinal... [more]
A0A8J5L691_ZINOF1.820e-1549.52Uncharacterized protein n=1 Tax=Zingiber officinal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14580contigP-wetherbeei_contig14580:2..1540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog88036.EFJ33783
PFAMsadh_short
Model size1300
Max annot lvl35493|Streptophyta
KEGG rclassRC00649
KEGG koko:K11153,ko:K19329
KEGG ReactionR08379,R08383
KEGG Pathwayko00830,ko01100,map00830,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0016491,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0071944
Exons2
Evalue8.65e-19
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota,37Q3T@33090|Viridiplantae,3GBAM@35493|Streptophyta
EC1.1.1.300
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
Cds size303
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186026.8633611-UTR-P-wetherbeei_contig14580:1..3361683186026.8633611-UTR-P-wetherbeei_contig14580:1..336Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14580 2..336 +
1683186026.895355-UTR-P-wetherbeei_contig14580:878..15401683186026.895355-UTR-P-wetherbeei_contig14580:878..1540Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14580 879..1540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186026.8753545-CDS-P-wetherbeei_contig14580:336..4771683186026.8753545-CDS-P-wetherbeei_contig14580:336..477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14580 337..477 +
1683186026.885034-CDS-P-wetherbeei_contig14580:716..8781683186026.885034-CDS-P-wetherbeei_contig14580:716..878Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14580 717..878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14580.1.1prot_P-wetherbeei_contig14580.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14580 337..878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14580.1.1

>prot_P-wetherbeei_contig14580.1.1 ID=prot_P-wetherbeei_contig14580.1.1|Name=mRNA_P-wetherbeei_contig14580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MQEEKTGVTAVSLHPGVIYTNLTRHHEGLMVRVYFALSRPFNKTIPQGAA
TSLYCAAADAVTGGAYYLNCHEGKVTASAEDTALAKELWDFSAKVTGSDC
*
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mRNA from alignment at P-wetherbeei_contig14580:2..1540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14580.1.1 ID=mRNA_P-wetherbeei_contig14580.1.1|Name=mRNA_P-wetherbeei_contig14580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1539bp|location=Sequence derived from alignment at P-wetherbeei_contig14580:2..1540+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTCCTCTCTTTTTGGTAACCTGTTTTCTTCTGCAGCGTGGCTGATACC TCTGGTAGACTGTCGGGCAGAGTACATGTACGGCAATGTGGCTGCCAGTA GATCTTCGTCCTGTAGGAGCTGATTCTTGGCGCATGTCTTCCTTCCTTCG TTTTCCAACGGCTTGTTACGGTTGATCTGTTTGCTTCATTGTCTCACTTC CCCGCGCCCTTTCTTTATATCACTGCATCGGTTTACGGTGCGTGCACCGC CAAAGCGTGCACTTCCGCCGCCACCGCTGCCCCCACCGCTGCCGCCGCCA TAACACAACCGCCGCAACAGGAGCTCAACCGACGGATGCAGGAGGAGAAA ACGGGCGTGACGGCTGTGTCGCTGCACCCCGGCGTCATCTACACAAATTT GACACGTCATCACGAAGGCTTGATGGTCCGCGTTTACTTCGCGCTTTCGA GGCCGTTCAACAAGACCATTCCCCAGGTCAGGCTGTCAGGGCGAAGTATC AGAGGAACAAGGATAAAGCAACTGAGAAAAACAGATGCTTCCTGCGTGGG GCATTCCGCACAAAACTAGGTTTTCAGGCATTGGTTGCTCTGGAGGCATC TTTGTGTGTTTGAAGCGGGTAGGAGACCGGCTTCGGGGCGAGTCATCACG CTAGGAGGCCGATCGAGGGTTTTTCCTGACGTTGTCGGTATCCGTTTCCC CTGCGCTACATCCAGGGCGCGGCGACGTCTCTGTATTGCGCGGCGGCGGA CGCCGTGACGGGCGGCGCCTATTACCTAAACTGCCACGAGGGGAAAGTCA CGGCTTCGGCCGAGGACACTGCGTTGGCCAAGGAGCTCTGGGACTTTTCG GCCAAGGTCACGGGCTCCGACTGCTGAGGAGGCGTGCCTCCCGAGTGCAA CCGTTTTTGCTGCTCTGCTTTTTTGCTGGAAACGCCGGCCACGGGCTCTG ACCGGCTGAACGCATCGGATTGCTCGAGGAATGCGCCTGCCTGCCAGATT TGGCAGGCCTGCTGGACCGCATAGGGCGACGCCGCTTTCTTCGTCTGCAA AGGGCCCTTTTTTCTGGTCGTGGTAGTTCAATAGGCAAATGGCTTTTCTT ATGCCAGGGATTGGCACGAGTCAACATCGGGAGGAAAACACAAATCCACG GGGCGGGAAGGGGGCTGCTGCATGGGCGGCGACATTGGCGGCAGCAGCGG CGGCAGCAGTAGCAGCAACAAGCTCCCACAGCGGATCGCCTGCTAAAAGG GAAGAAGGGGATCAAAGGCGTAGCTGCCAGGACAAATAGGGGTGAGGGAG AGGGGACCTGGGAGAGGCGACAGGGTGCAAGCAGCAGCAGGCCACAGTGT GGAAAATGCCGCCACCGCTCCGGAAAAGGAGGAGCGGAATGATTAAGGAT CAGGGTAGTCGTTTTGTCAAACCAAACGGCGATGCGAAACCGTCTGCCTC CTCATTTCATCTCGGCCTTTTGCACGCTTGCTTCGGTGTTTGCCGCTCAG CTGTTGGAAATGGTGTTAGCGTAAAGGAGGAAGGCGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14580:2..1540+

>mRNA_P-wetherbeei_contig14580.1.1 ID=mRNA_P-wetherbeei_contig14580.1.1|Name=mRNA_P-wetherbeei_contig14580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig14580:2..1540+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGAGGAGAAAACGGGCGTGACGGCTGTGTCGCTGCACCCCGGCGT
CATCTACACAAATTTGACACGTCATCACGAAGGCTTGATGGTCCGCGTTT
ACTTCGCGCTTTCGAGGCCGTTCAACAAGACCATTCCCCAGGGCGCGGCG
ACGTCTCTGTATTGCGCGGCGGCGGACGCCGTGACGGGCGGCGCCTATTA
CCTAAACTGCCACGAGGGGAAAGTCACGGCTTCGGCCGAGGACACTGCGT
TGGCCAAGGAGCTCTGGGACTTTTCGGCCAAGGTCACGGGCTCCGACTGC
TGA
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